Prupe.1G159800_v2.0.a1

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021185
Physical Location & Seq
Forward (+)
12729538 .. 12731573
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G159800.1

Sequence Viewer

Length: 801 bp
ATGCCAAAGCTGGAGCAATTAGAGGACATATTGGGAACACTAGAAGGCTTCACAGTGAAAGAGAACTGGGACAGGTTCTTCACCATTCGAGGCAGTGACAACGAATTCGAGTGGTACGCTCAGTGGGCCGACCTCAGAGGCCCACTCCTCGCCCACCTCTCGAAGCTCCAGTCCCAAACCCTACCGCTGCAAATACTCGTTCCCGGTTGCGGCGTTTCCAACCTCTCTGATCACCTCTACGACGCTGGGTTTAAGGCCATCACGAACATTGACTTCTCTGAGATTGCCGTGTCCGATATGCTGCAACGGAATGCGTGCCAACGCCCTGGTATGAAATGGCAAGTCATGGACATGACCACCATGCAGTTTGAAGATGAGAGCTTTGACGTTGTGGTTGACAAAGGTGGATTGGACGCCTTGATAGAGCCCGAGTTTGGCCTTAAGAAGGGGAATCAATACTTATCAGATGTAAACAGAGTTTTAAAATCGGGAGGAAAATTTGTTTGCTTTACATGGGGTTTCTGCGATGTTTTGGGTTTGCTCTTCTCCAACTTCCGGCTTGGTTGGAAAATGGGTATTTATGCCATGCCTCTGAAACCAAACTGTACCAAACCAAATGATCTTCAGACTTTTATGGTGGTTGCTGAAAAGGAGACGCCTTCTGCATTGCATCAGATAACGTCAACATTCACAATTTCTCATGGAAATCAGACTTGTAGCCTCCTTGAAGCTCTTGAAAACGAGAATCGAGTTCGTAAAGAATACTCCACTGCTGGTTCTGATATGGCAGTGCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_25 Spermine_synth

Protein Analysis

267

Amino Acids

29.95

Weight (kDa)

4.92

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021185)

Species Orthologous Gene IDs
malus_domestica MD04G1013600.v1.1
prunus_persica Prupe.1G159800_v2.0.a1
pyrus_communis pycom04g01060
rosa_multiflora Rmu_sc0005933.1_g000001
rosa_wichuraiana Rw0G005030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 185, 210
AcsI RAATTY 2 cut(s) 104, 497
AcuI CTGAAG 1 cut(s) 608
AcyI GRCGYC 2 cut(s) 414, 656
AfaI GTAC 2 cut(s) 116, 607
AfiI CCNNNNNNNGG 4 cut(s) 209, 434, 445, 555
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 3 cut(s) 371, 728, 737
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 4 cut(s) 10, 166, 381, 731
AluI AGCT 4 cut(s) 10, 166, 381, 731
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 4 cut(s) 126, 139, 255, 436
ApeKI GCWGC 2 cut(s) 187, 301
ApoI RAATTY 2 cut(s) 104, 497
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 155, 187
AspS9I GGNCC 2 cut(s) 126, 140
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 73, 224, 787
AvaI CYCGRG 1 cut(s) 428
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 2 cut(s) 174, 288
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 3 cut(s) 188, 211, 302
BlsI GCNGC 3 cut(s) 189, 212, 303
Bme1390I CCNGG 2 cut(s) 204, 327
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 126, 140
BmrFI CCNGG 2 cut(s) 204, 327
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 679
BmuI ACTGGG 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 2 cut(s) 32, 152
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 2 cut(s) 414, 656
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 434, 445, 555
Bse1I ACTGG 2 cut(s) 71, 169
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 325
BseLI CCNNNNNNNGG 4 cut(s) 209, 434, 445, 555
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 134, 148, 270
BseNI ACTGG 2 cut(s) 71, 169
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 174, 288
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 4 cut(s) 128, 141, 257, 438
BsiHKAI GWGCWC 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 204, 556
BslFI GGGAC 2 cut(s) 83, 157
BslI CCNNNNNNNGG 4 cut(s) 209, 434, 445, 555
BsmAI GTCTC 1 cut(s) 647
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 2 cut(s) 83, 157
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 4 cut(s) 128, 141, 257, 438
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 429, 795
Bsp143I GATC 2 cut(s) 229, 619
BspACI CCGC 2 cut(s) 185, 210
BspANI GGCC 4 cut(s) 128, 141, 257, 438
BspCNI CTCAG 3 cut(s) 133, 147, 271
BspQI GCTCTTC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 2 cut(s) 71, 169
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 2 cut(s) 229, 619
BssNI GRCGYC 2 cut(s) 414, 656
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 55, 605
Bst6I CTCTTC 1 cut(s) 548
BstACI GRCGYC 2 cut(s) 414, 656
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 120, 134, 279
BstENI CCTNNNNNAGG 1 cut(s) 443
BstKTI GATC 2 cut(s) 232, 622
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 2 cut(s) 229, 619
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 202, 325
BstV1I GCAGC 2 cut(s) 174, 288
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuRI GGCC 4 cut(s) 128, 141, 257, 438
BtgZI GCGATG 1 cut(s) 540
BtsI GCAGTG 3 cut(s) 100, 768, 795
BtsIMutI CAGTG 5 cut(s) 60, 100, 128, 768, 795
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 126, 140
CseI GACGC 3 cut(s) 251, 422, 664
Csp6I GTAC 2 cut(s) 115, 606
CviAII CATG 6 cut(s) 346, 352, 361, 513, 586, 701
CviQI GTAC 2 cut(s) 115, 606
DdeI CTNAG 3 cut(s) 120, 134, 279
DpnI GATC 2 cut(s) 231, 621
DpnII GATC 2 cut(s) 229, 619
DraI TTTAAA 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 608
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 6 cut(s) 349, 355, 364, 516, 589, 704
FaqI GGGAC 2 cut(s) 83, 157
FatI CATG 6 cut(s) 345, 351, 360, 512, 585, 700
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 3 cut(s) 188, 211, 302
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 3 cut(s) 188, 211, 302
FspBI CTAG 1 cut(s) 41
GluI GCNGC 3 cut(s) 188, 211, 302
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 2 cut(s) 32, 152
HaeIII GGCC 4 cut(s) 128, 141, 257, 438
HapII CCGG 2 cut(s) 204, 556
HgaI GACGC 3 cut(s) 251, 422, 664
Hin1I GRCGYC 2 cut(s) 414, 656
Hin1II CATG 6 cut(s) 349, 355, 364, 516, 589, 704
HincII GTYRAC 2 cut(s) 397, 684
HindII GTYRAC 2 cut(s) 397, 684
HinfI GANTC 2 cut(s) 451, 745
HpaII CCGG 2 cut(s) 204, 556
HphI GGTGA 3 cut(s) 73, 224, 787
Hpy166II GTNNAC 3 cut(s) 397, 472, 684
Hpy188III TCNNGA 4 cut(s) 160, 262, 489, 734
Hpy8I GTNNAC 3 cut(s) 397, 472, 684
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 38, 439, 669
HpyCH4III ACNGT 2 cut(s) 55, 605
HpyCH4IV ACGT 2 cut(s) 387, 680
HpyCH4V TGCA 5 cut(s) 190, 304, 364, 665, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 3 cut(s) 120, 134, 279
HpySE526I ACGT 2 cut(s) 387, 680
Hsp92I GRCGYC 2 cut(s) 414, 656
Hsp92II CATG 6 cut(s) 349, 355, 364, 516, 589, 704
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 229, 619
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 2 cut(s) 13, 171
LpnPI CCDG 9 cut(s) 52, 58, 182, 217, 231, 312, 339, 569, 759
Lsp1109I GCAGC 2 cut(s) 174, 288
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 387, 680
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 231, 621
MboI GATC 2 cut(s) 229, 619
MboII GAAGA 4 cut(s) 70, 383, 535, 614
MhlI GDGCHC 2 cut(s) 429, 795
MluCI AATT 4 cut(s) 17, 104, 497, 693
MmeI TCCRAC 3 cut(s) 243, 545, 573
MseI TTAA 3 cut(s) 252, 441, 482
MslI CAYNNNNRTG 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 187
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 2 cut(s) 204, 556
MspR9I CCNGG 2 cut(s) 204, 327
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 229, 619
NlaIII CATG 6 cut(s) 349, 355, 364, 516, 589, 704
NmuCI GTSAC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 548
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 451, 745
PkrI GCNGC 3 cut(s) 189, 212, 303
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 2 cut(s) 126, 140
RsaI GTAC 2 cut(s) 116, 607
RsaNI GTAC 2 cut(s) 115, 606
RseI CAYNNNNRTG 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 3 cut(s) 252, 441, 482
SatI GCNGC 3 cut(s) 188, 211, 302
Sau3AI GATC 2 cut(s) 229, 619
Sau96I GGNCC 2 cut(s) 126, 140
ScrFI CCNGG 2 cut(s) 204, 327
SduI GDGCHC 2 cut(s) 429, 795
SfaNI GCATC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 17, 104, 497, 693
SsiI CCGC 2 cut(s) 185, 210
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 202, 325
TaaI ACNGT 2 cut(s) 55, 605
TaiI ACGT 2 cut(s) 390, 683
TaqI TCGA 4 cut(s) 88, 108, 161, 748
TasI AATT 4 cut(s) 17, 104, 497, 693
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 451, 745
Tru1I TTAA 3 cut(s) 252, 441, 482
Tru9I TTAA 3 cut(s) 252, 441, 482
TscAI CASTG 5 cut(s) 60, 100, 128, 775, 795
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 187, 301
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 5 cut(s) 60, 100, 128, 775, 795
Vha464I CTTAAG 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 2 cut(s) 104, 497
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.