Rmu_sc0005933.1_g000001

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005933.1
OG0021185
Physical Location & Seq
Reverse (-)
1 .. 992
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005933.1_g000001.1.cds

Sequence Viewer

Length: 699 bp
atggccaaggaggagcagctagcggagcttctggaaaccctaggcgacttcacgagcaaagagaactgggacaagttcttcaccatccgaggcaccgaagacgccttcgagtggtacgccgagtggtccgagctccgagaccctttgctctcccacctcccgccaaaaccccaaatcctcgtccccggctgcggcagctcccgcctctccgagcacctgtatgacgccggcttcacctccatcaccaacatcgacttctccaaagtcgccatttccgattgcctccgccgcaatgtgcgcctcaggccccttatgcggtggcgcgtcatggacatgaccgccatgcagcttgaggatgaggcatttgatgctgtggttgacaaaggtggattggatgcgttaatggagccggagcttggccctaagttgggggatcaatatttagctgaggttagaagagttttgaagtctggagggaaatttatttgccttacattggcggagtcgcatgttctggctctgcttttcccaaagttccggtttgggtggaaaattagtgtccatgcaatacctcacaaaccgtctagtaagccaagtcttcaagcatttatggtggttgctgtaaaagagatgtcctctgagttgcaggagatcacatcctcattcaataagtcttctcttgcttgtagaggaagtcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_25 Spermine_synth

Protein Analysis

233

Amino Acids

26.28

Weight (kDa)

5.8

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021185)

Species Orthologous Gene IDs
malus_domestica MD04G1013600.v1.1
prunus_persica Prupe.1G159800_v2.0.a1
pyrus_communis pycom04g01060
rosa_multiflora Rmu_sc0005933.1_g000001
rosa_wichuraiana Rw0G005030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 1 cut(s) 324
AciI CCGC 9 cut(s) 23, 161, 192, 202, 286, 289, 316, 339, 500
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 2 cut(s) 102, 225
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 7 cut(s) 111, 191, 315, 416, 427, 428, 496
AgsI TTSAA 3 cut(s) 466, 602, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 7 cut(s) 19, 28, 133, 198, 349, 415, 446
AluI AGCT 7 cut(s) 19, 28, 133, 198, 349, 415, 446
Alw21I GWGCWC 2 cut(s) 135, 216
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 441
AoxI GGCC 3 cut(s) 3, 305, 418
ApeKI GCWGC 4 cut(s) 16, 189, 195, 346
ApoI RAATTY 1 cut(s) 479
AspA2I CCTAGG 1 cut(s) 40
AspLEI GCGC 2 cut(s) 300, 324
AspS9I GGNCC 3 cut(s) 126, 306, 419
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 73, 226, 235
AsuNHI GCTAGC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 126
AvrII CCTAGG 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 302
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 1 cut(s) 52
BbsI GAAGAC 3 cut(s) 105, 590, 666
Bbv12I GWGCWC 2 cut(s) 135, 216
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 28, 176, 207, 358
BccI CCATC 2 cut(s) 92, 248
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 3 cut(s) 20, 41, 585
BisI GCNGC 6 cut(s) 17, 190, 193, 196, 289, 347
BlnI CCTAGG 1 cut(s) 40
BlsI GCNGC 6 cut(s) 18, 191, 194, 197, 290, 348
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 126, 306, 419
BmiI GGNNCC 3 cut(s) 94, 308, 408
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 358, 385
BmtI GCTAGC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 3 cut(s) 105, 590, 666
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 186
BsaHI GRCGYC 2 cut(s) 102, 225
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 6, 40, 88, 184
BsaWI WCCGGW 1 cut(s) 537
Bsc4I CCNNNNNNNGG 7 cut(s) 111, 191, 315, 416, 427, 428, 496
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 298
BseDI CCNNGG 4 cut(s) 6, 40, 88, 184
BseGI GGATG 4 cut(s) 84, 361, 400, 656
BseLI CCNNNNNNNGG 7 cut(s) 111, 191, 315, 416, 427, 428, 496
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 3 cut(s) 316, 438, 630
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 4 cut(s) 28, 176, 207, 358
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 5, 307, 420
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 2 cut(s) 135, 216
BsiSI CCGG 4 cut(s) 186, 228, 410, 538
BslFI GGGAC 2 cut(s) 83, 167
BslI CCNNNNNNNGG 7 cut(s) 111, 191, 315, 416, 427, 428, 496
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 83, 167
BsnI GGCC 3 cut(s) 5, 307, 420
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 135, 216
Bsp143I GATC 2 cut(s) 433, 651
BspACI CCGC 9 cut(s) 23, 161, 192, 202, 286, 289, 316, 339, 500
BspANI GGCC 3 cut(s) 5, 307, 420
BspCNI CTCAG 3 cut(s) 315, 439, 631
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 94, 308, 408
BspOI GCTAGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 4 cut(s) 6, 40, 88, 184
BssMI GATC 2 cut(s) 433, 651
BssNI GRCGYC 2 cut(s) 102, 225
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 2 cut(s) 6, 40
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 2 cut(s) 102, 225
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 21, 229
BstDEI CTNAG 4 cut(s) 302, 423, 447, 639
BstF5I GGATG 4 cut(s) 84, 361, 400, 656
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 2 cut(s) 300, 324
BstKTI GATC 2 cut(s) 436, 654
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 433, 651
BstMWI GCNNNNNNNGC 8 cut(s) 25, 195, 201, 288, 297, 304, 313, 368
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 184
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 28, 176, 207, 358
BstV2I GAAGAC 3 cut(s) 105, 590, 666
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 3 cut(s) 5, 307, 420
BtsCI GGATG 4 cut(s) 84, 361, 400, 656
Cac8I GCNNGC 2 cut(s) 21, 229
CfoI GCGC 2 cut(s) 300, 324
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 126, 306, 419
CseI GACGC 3 cut(s) 110, 233, 313
Csp6I GTAC 1 cut(s) 115
CviAII CATG 5 cut(s) 328, 334, 343, 509, 563
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 4 cut(s) 302, 423, 447, 639
DpnI GATC 2 cut(s) 435, 653
DpnII GATC 2 cut(s) 433, 651
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 2 cut(s) 275, 515
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 6, 40
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 6, 40
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 6, 40
FaeI CATG 5 cut(s) 331, 337, 346, 512, 566
FaiI YATR 8 cut(s) 222, 314, 329, 335, 344, 510, 564, 611
FaqI GGGAC 2 cut(s) 83, 167
FatI CATG 5 cut(s) 327, 333, 342, 508, 562
FauI CCCGC 2 cut(s) 168, 209
Fnu4HI GCNGC 6 cut(s) 17, 190, 193, 196, 289, 347
FokI GGATG 4 cut(s) 71, 368, 407, 643
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 6 cut(s) 17, 190, 193, 196, 289, 347
FspBI CTAG 3 cut(s) 20, 41, 585
GlaI GCGC 2 cut(s) 299, 323
GluI GCNGC 6 cut(s) 17, 190, 193, 196, 289, 347
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 3 cut(s) 5, 307, 420
HapII CCGG 4 cut(s) 186, 228, 410, 538
HgaI GACGC 3 cut(s) 110, 233, 313
HhaI GCGC 2 cut(s) 300, 324
Hin1I GRCGYC 2 cut(s) 102, 225
Hin1II CATG 5 cut(s) 331, 337, 346, 512, 566
Hin6I GCGC 2 cut(s) 298, 322
HinP1I GCGC 2 cut(s) 298, 322
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 1 cut(s) 503
HpaII CCGG 4 cut(s) 186, 228, 410, 538
HphI GGTGA 3 cut(s) 73, 226, 235
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 6 cut(s) 89, 130, 137, 211, 277, 640
Hpy188III TCNNGA 3 cut(s) 32, 52, 471
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4V TGCA 3 cut(s) 346, 566, 646
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 195, 201, 288, 297, 304, 313, 368
HpyF3I CTNAG 4 cut(s) 302, 423, 447, 639
Hsp92I GRCGYC 2 cut(s) 102, 225
Hsp92II CATG 5 cut(s) 331, 337, 346, 512, 566
HspAI GCGC 2 cut(s) 298, 322
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 433, 651
LmnI GCTCC 6 cut(s) 13, 25, 138, 203, 406, 412
Lsp1109I GCAGC 4 cut(s) 28, 176, 207, 358
LweI GCATC 2 cut(s) 358, 385
MaeI CTAG 3 cut(s) 20, 41, 585
MalI GATC 2 cut(s) 435, 653
MboI GATC 2 cut(s) 433, 651
MboII GAAGA 5 cut(s) 70, 110, 468, 590, 666
MhlI GDGCHC 2 cut(s) 135, 216
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 479, 552
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 512
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 2 cut(s) 219, 332
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 186, 228, 410, 538
MspR9I CCNGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 8 cut(s) 25, 195, 201, 288, 297, 304, 313, 368
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 433, 651
NgoMIV GCCGGC 1 cut(s) 227
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 5 cut(s) 331, 337, 346, 512, 566
NlaIV GGNNCC 3 cut(s) 94, 308, 408
NmeAIII GCCGAG 1 cut(s) 145
NspI RCATGY 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdiI GCCGGC 1 cut(s) 229
PkrI GCNGC 6 cut(s) 18, 191, 194, 197, 290, 348
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 94, 308, 408
PspPI GGNCC 3 cut(s) 126, 306, 419
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 219, 332
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 6 cut(s) 17, 190, 193, 196, 289, 347
Sau3AI GATC 2 cut(s) 433, 651
Sau96I GGNCC 3 cut(s) 126, 306, 419
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 2 cut(s) 135, 216
SfaNI GCATC 2 cut(s) 358, 385
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 219, 332
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 2 cut(s) 479, 552
SsiI CCGC 9 cut(s) 23, 161, 192, 202, 286, 289, 316, 339, 500
SspI AATATT 1 cut(s) 440
SspMI CTAG 3 cut(s) 20, 41, 585
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 6, 40
TaaI ACNGT 1 cut(s) 582
TaqI TCGA 2 cut(s) 108, 252
TasI AATT 2 cut(s) 479, 552
TauI GCSGC 2 cut(s) 195, 291
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 4 cut(s) 16, 189, 195, 346
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 512
XmaJI CCTAGG 1 cut(s) 40
XspI CTAG 3 cut(s) 20, 41, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.