Prupe.1G176400_v2.0.a1

WSTF, HB1, Itc1p, MBD9 motif 1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
14967130 .. 14969533
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G176400.1

Sequence Viewer

Length: 270 bp
ATGAAGCAGCCATTCTGTATGCAACCTTGGGATTCTTCTCCAAAGATTGTCAAGAAACTGTTCAAGGTCATTTGGGTACATATATGTCACAGCAGTTTTCTAAAGGCTCATATGTTTGGAGATAAGGTCATTGTTACCACAAGCACAATGATAATGAGCAGTATGTGTGGGAGCCGCTCCGATTCAATGTTTATGAGGTTTGATGGAGAAGGAAGGGTCGTGGGGACATGCCCTTGGTTTTCGTGTTTTTATTTTATTTTATATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

9.14

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021240)

Species Orthologous Gene IDs
prunus_persica Prupe.1G176400_v2.0.a1 Prupe.5G141600_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00033400
rosa_samantha Rh5AG318100 Rh5BG328300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 177
AciI CCGC 1 cut(s) 175
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 2 cut(s) 64, 186
ApeKI GCWGC 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 197
BisI GCNGC 2 cut(s) 8, 175
BlsI GCNGC 2 cut(s) 9, 176
BmiI GGNNCC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 26, 233
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
BseDI CCNNGG 2 cut(s) 26, 233
BseXI GCAGC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BspACI CCGC 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 26, 233
BssT1I CCWWGG 2 cut(s) 26, 233
Bst4CI ACNGT 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 228
CviJI RGCY 3 cut(s) 10, 107, 174
CviKI_1 RGCY 3 cut(s) 10, 107, 174
CviQI GTAC 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 26, 233
EcoT14I CCWWGG 2 cut(s) 26, 233
ErhI CCWWGG 2 cut(s) 26, 233
FaeI CATG 1 cut(s) 231
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 227
FauNDI CATATG 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 8, 175
Fsp4HI GCNGC 2 cut(s) 8, 175
GluI GCNGC 2 cut(s) 8, 175
Hin1II CATG 1 cut(s) 231
HinfI GANTC 2 cut(s) 32, 182
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 203, 207
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 22
Hsp92II CATG 1 cut(s) 231
LmnI GCTCC 2 cut(s) 171, 182
Lsp1109I GCAGC 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 86, 133
MbiI CCGCTC 1 cut(s) 177
MboII GAAGA 1 cut(s) 27
MnlI CCTC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 59
NdeI CATATG 1 cut(s) 111
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 32, 182
PkrI GCNGC 2 cut(s) 9, 176
PspN4I GGNNCC 1 cut(s) 173
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SatI GCNGC 2 cut(s) 8, 175
SetI ASST 4 cut(s) 28, 69, 129, 200
SgeI CNNG 8 cut(s) 39, 64, 76, 153, 232, 240, 246, 255
SsiI CCGC 1 cut(s) 175
StyI CCWWGG 2 cut(s) 26, 233
TaaI ACNGT 1 cut(s) 60
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 32, 182
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.