Rh5AG318100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
46783443 .. 46783886
444 bp
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UTR
Exon/CDS
Intron
Rh5AG318100.1

Sequence Viewer

Length: 153 bp
ATGAGGCTCAGTCCTATCAAAGTAGTAGCAGAGGTGGCGGTAGTGACGTCACCCATCGTGAAGAAGGAGTTGGTGGCTATGGAAGTGATGATGGAGGTTGTAGCGGTGGTGGCCGTCATGAAGGTGAAGGCAGTGGAATCCAACTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.34

Weight (kDa)

8.14

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021240)

Species Orthologous Gene IDs
prunus_persica Prupe.1G176400_v2.0.a1 Prupe.5G141600_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00033400
rosa_samantha Rh5AG318100 Rh5BG328300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
AciI CCGC 2 cut(s) 38, 104
AcoI YGGCCR 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AoxI GGCC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 42, 136
BccI CCATC 2 cut(s) 62, 85
BceAI ACGGC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 47
BseMII CTCAG 1 cut(s) 22
BshFI GGCC 1 cut(s) 113
BsnI GGCC 1 cut(s) 113
BspACI CCGC 2 cut(s) 38, 104
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 35, 110
BsuRI GGCC 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
CciI TCATGA 1 cut(s) 117
CviAII CATG 2 cut(s) 118, 150
CviJI RGCY 3 cut(s) 7, 77, 113
CviKI_1 RGCY 3 cut(s) 7, 77, 113
DdeI CTNAG 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 111
FaeI CATG 2 cut(s) 121, 153
FaiI YATR 3 cut(s) 80, 119, 151
FatI CATG 2 cut(s) 117, 149
HaeIII GGCC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 121, 153
HinfI GANTC 1 cut(s) 137
HphI GGTGA 2 cut(s) 42, 136
Hpy188III TCNNGA 2 cut(s) 58, 118
HpyAV CCTTC 3 cut(s) 58, 115, 121
HpyCH4IV ACGT 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 110
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 121, 153
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 43, 48
MboII GAAGA 1 cut(s) 73
MnlI CCTC 2 cut(s) 25, 88
MslI CAYNNNNRTG 1 cut(s) 122
MspJI CNNR 9 cut(s) 20, 26, 31, 42, 57, 65, 65, 70, 130
MwoI GCNNNNNNNGC 2 cut(s) 35, 110
NlaIII CATG 2 cut(s) 121, 153
NmuCI GTSAC 2 cut(s) 43, 48
PagI TCATGA 1 cut(s) 117
PfeI GAWTC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 122
SetI ASST 4 cut(s) 36, 50, 99, 126
SgeI CNNG 2 cut(s) 70, 130
SmiMI CAYNNNNRTG 1 cut(s) 122
SsiI CCGC 2 cut(s) 38, 104
TaiI ACGT 1 cut(s) 50
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 43, 48
Tsp45I GTSAC 2 cut(s) 43, 48
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.