RNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.1G176400_v2.0.a1 Prupe.5G141600_v2.0.a1 |
| rosa_roxburghii | Rroxscaffold_1G00033400 |
| rosa_samantha | Rh5AG318100 Rh5BG328300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 137 |
| AccB1I | GGYRCC | 2 cut(s) | 137, 154 |
| AccII | CGCG | 1 cut(s) | 11 |
| AciI | CCGC | 3 cut(s) | 84, 87, 114 |
| AcsI | RAATTY | 1 cut(s) | 163 |
| AfaI | GTAC | 1 cut(s) | 139 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 147 |
| AgsI | TTSAA | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 1 cut(s) | 181 |
| ApoI | RAATTY | 1 cut(s) | 163 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 20, 52 |
| Asp718I | GGTACC | 1 cut(s) | 137 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 1 cut(s) | 136 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 121, 154 |
| BanI | GGYRCC | 2 cut(s) | 137, 154 |
| BbvI | GCAGC | 1 cut(s) | 168 |
| BfmI | CTRYAG | 1 cut(s) | 320 |
| BisI | GCNGC | 2 cut(s) | 85, 182 |
| BlsI | GCNGC | 2 cut(s) | 86, 183 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 3 cut(s) | 139, 156, 257 |
| BmrI | ACTGGG | 1 cut(s) | 64 |
| BmuI | ACTGGG | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 3 cut(s) | 133, 158, 176 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 147 |
| Bse1I | ACTGG | 1 cut(s) | 70 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 3 cut(s) | 133, 158, 176 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 147 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseNI | ACTGG | 1 cut(s) | 70 |
| BseXI | GCAGC | 1 cut(s) | 168 |
| Bsh1236I | CGCG | 1 cut(s) | 11 |
| Bsh1285I | CGRYCG | 2 cut(s) | 15, 46 |
| BshFI | GGCC | 1 cut(s) | 68 |
| BshNI | GGYRCC | 2 cut(s) | 137, 154 |
| BsiEI | CGRYCG | 2 cut(s) | 15, 46 |
| BslFI | GGGAC | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 147 |
| BsmFI | GGGAC | 1 cut(s) | 20 |
| BsnI | GGCC | 1 cut(s) | 68 |
| Bsp143I | GATC | 1 cut(s) | 12 |
| BspACI | CCGC | 3 cut(s) | 84, 87, 114 |
| BspANI | GGCC | 1 cut(s) | 68 |
| BspFNI | CGCG | 1 cut(s) | 11 |
| BspLI | GGNNCC | 3 cut(s) | 139, 156, 257 |
| BspT107I | GGYRCC | 2 cut(s) | 137, 154 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BsrI | ACTGG | 1 cut(s) | 70 |
| BssECI | CCNNGG | 3 cut(s) | 133, 158, 176 |
| BssMI | GATC | 1 cut(s) | 12 |
| BssT1I | CCWWGG | 3 cut(s) | 133, 158, 176 |
| Bst4CI | ACNGT | 3 cut(s) | 47, 58, 321 |
| BstFNI | CGCG | 1 cut(s) | 11 |
| BstKTI | GATC | 1 cut(s) | 15 |
| BstMBI | GATC | 1 cut(s) | 12 |
| BstMCI | CGRYCG | 2 cut(s) | 15, 46 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 152, 181, 187 |
| BstSFI | CTRYAG | 1 cut(s) | 320 |
| BstUI | CGCG | 1 cut(s) | 11 |
| BstV1I | GCAGC | 1 cut(s) | 168 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 77 |
| BsuRI | GGCC | 1 cut(s) | 68 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 17 |
| Csp6I | GTAC | 1 cut(s) | 138 |
| CviAII | CATG | 1 cut(s) | 22 |
| CviJI | RGCY | 4 cut(s) | 68, 175, 181, 258 |
| CviKI_1 | RGCY | 4 cut(s) | 68, 175, 181, 258 |
| CviQI | GTAC | 1 cut(s) | 138 |
| DpnI | GATC | 1 cut(s) | 14 |
| DpnII | GATC | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 3 cut(s) | 133, 158, 176 |
| EcoT14I | CCWWGG | 3 cut(s) | 133, 158, 176 |
| ErhI | CCWWGG | 3 cut(s) | 133, 158, 176 |
| FaeI | CATG | 1 cut(s) | 25 |
| FaiI | YATR | 4 cut(s) | 23, 169, 248, 278 |
| FaqI | GGGAC | 1 cut(s) | 20 |
| FatI | CATG | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 2 cut(s) | 85, 182 |
| Fsp4HI | GCNGC | 2 cut(s) | 85, 182 |
| GluI | GCNGC | 2 cut(s) | 85, 182 |
| HaeIII | GGCC | 1 cut(s) | 68 |
| HgaI | GACGC | 1 cut(s) | 17 |
| Hin1II | CATG | 1 cut(s) | 25 |
| HincII | GTYRAC | 1 cut(s) | 61 |
| HindII | GTYRAC | 1 cut(s) | 61 |
| HinfI | GANTC | 1 cut(s) | 266 |
| HphI | GGTGA | 1 cut(s) | 136 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 127 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 127 |
| Hpy99I | CGWCG | 1 cut(s) | 44 |
| HpyAV | CCTTC | 1 cut(s) | 11 |
| HpyCH4III | ACNGT | 3 cut(s) | 47, 58, 321 |
| HpyCH4V | TGCA | 3 cut(s) | 108, 146, 202 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 152, 181, 187 |
| Hsp92II | CATG | 1 cut(s) | 25 |
| KpnI | GGTACC | 1 cut(s) | 141 |
| Kzo9I | GATC | 1 cut(s) | 12 |
| LmnI | GCTCC | 1 cut(s) | 255 |
| LpnPI | CCDG | 4 cut(s) | 44, 83, 170, 296 |
| Lsp1109I | GCAGC | 1 cut(s) | 168 |
| MaeIII | GTNAC | 3 cut(s) | 47, 95, 216 |
| MalI | GATC | 1 cut(s) | 14 |
| MboI | GATC | 1 cut(s) | 12 |
| MluCI | AATT | 1 cut(s) | 163 |
| MnlI | CCTC | 1 cut(s) | 273 |
| MslI | CAYNNNNRTG | 1 cut(s) | 233 |
| MvnI | CGCG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 152, 181, 187 |
| NdeII | GATC | 1 cut(s) | 12 |
| NlaIII | CATG | 1 cut(s) | 25 |
| NlaIV | GGNNCC | 3 cut(s) | 139, 156, 257 |
| PfeI | GAWTC | 1 cut(s) | 266 |
| PkrI | GCNGC | 2 cut(s) | 86, 183 |
| Ple19I | CGATCG | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 3 cut(s) | 139, 156, 257 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PvuI | CGATCG | 1 cut(s) | 15 |
| RsaI | GTAC | 1 cut(s) | 139 |
| RsaNI | GTAC | 1 cut(s) | 138 |
| RseI | CAYNNNNRTG | 1 cut(s) | 233 |
| SatI | GCNGC | 2 cut(s) | 85, 182 |
| Sau3AI | GATC | 1 cut(s) | 12 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SetI | ASST | 3 cut(s) | 135, 212, 284 |
| SfcI | CTRYAG | 1 cut(s) | 320 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 233 |
| Sse9I | AATT | 1 cut(s) | 163 |
| SsiI | CCGC | 3 cut(s) | 84, 87, 114 |
| StyI | CCWWGG | 3 cut(s) | 133, 158, 176 |
| TaaI | ACNGT | 3 cut(s) | 47, 58, 321 |
| TaqI | TCGA | 2 cut(s) | 15, 39 |
| TasI | AATT | 1 cut(s) | 163 |
| TauI | GCSGC | 1 cut(s) | 87 |
| TfiI | GAWTC | 1 cut(s) | 266 |
| TscAI | CASTG | 1 cut(s) | 61 |
| TseI | GCWGC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 1 cut(s) | 38 |
| TspRI | CASTG | 1 cut(s) | 61 |
| XapI | RAATTY | 1 cut(s) | 163 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 148, 165 |