Rh5BG328300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0021240
Physical Location & Seq
Reverse (-)
45217570 .. 45227382
9813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG328300.1

Sequence Viewer

Length: 408 bp
ATGCAATCGAAGGCATCAAAGGCTAGGACCTTAACGACCGCAACATTACCGTCAATGAGGCTCAGTCCTATCAAAGTAGTGGCAGAGGCGGCGGTAGTGGCGTCGCCCGTCGTGAAGACAGAGTTGGTGGCTATGGAAGTGATGATGGAGGTTGTAGCGGTGGTGGCCGTCATGAAGGTGAAGGCAGTGGAATCCAAATTAGAGGGTTTCGAAGAATTCAGTAACAAAATCAAACACCTTAAATTTTTAGTTGTTCCCGACGACCATGTTATGAAGAAGAATGCATATATAGGCCATCAAGTACGTCGTTTTTTCGTTGCACCTCTTCTAAAGAATTCTCAACTTCTTCCCTTGAGACCTTTTCCAACAGATATATATCGTCTTCAATGGTGGCACAAGGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.3

Weight (kDa)

9.89

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021240)

Species Orthologous Gene IDs
prunus_persica Prupe.1G176400_v2.0.a1 Prupe.5G141600_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00033400
rosa_samantha Rh5AG318100 Rh5BG328300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 39, 89, 92, 158
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 3 cut(s) 215, 242, 334
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
Alw26I GTCTC 1 cut(s) 349
AoxI GGCC 2 cut(s) 165, 292
ApoI RAATTY 3 cut(s) 215, 242, 334
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 122, 374
BccI CCATC 2 cut(s) 139, 303
BceAI ACGGC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 122, 374
Bpu14I TTCGAA 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 375
BseMII CTCAG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 167, 294
BsiEI CGRYCG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 2 cut(s) 167, 294
Bso31I GGTCTC 1 cut(s) 349
Bsp119I TTCGAA 1 cut(s) 210
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 4 cut(s) 39, 89, 92, 158
BspANI GGCC 2 cut(s) 167, 294
BspCNI CTCAG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 349
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 62
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 1 cut(s) 400
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 20, 89, 98, 164
BstV2I GAAGAC 2 cut(s) 122, 374
BsuRI GGCC 2 cut(s) 167, 294
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 172, 266
CviJI RGCY 5 cut(s) 23, 61, 131, 167, 294
CviKI_1 RGCY 5 cut(s) 23, 61, 131, 167, 294
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 27
EcoRI GAATTC 2 cut(s) 215, 334
EcoT22I ATGCAT 1 cut(s) 286
FaeI CATG 2 cut(s) 175, 269
FaiI YATR 9 cut(s) 134, 173, 267, 272, 286, 288, 290, 374, 376
FatI CATG 2 cut(s) 171, 265
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 167, 294
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 175, 269
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 112, 172, 257
Hpy99I CGWCG 4 cut(s) 106, 113, 263, 309
HpyAV CCTTC 3 cut(s) 4, 169, 175
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 4, 284, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 89, 98, 164
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 304
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 175, 269
Kzo9I GATC 1 cut(s) 400
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 7 cut(s) 127, 224, 286, 289, 317, 338, 374
MluCI AATT 4 cut(s) 197, 215, 242, 334
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 5 cut(s) 51, 79, 142, 196, 333
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 2 cut(s) 32, 240
MslI CAYNNNNRTG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 4 cut(s) 20, 89, 98, 164
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 175, 269
NsiI ATGCAT 1 cut(s) 286
NspV TTCGAA 1 cut(s) 210
PagI TCATGA 1 cut(s) 171
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 27
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 32, 240
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 27
SetI ASST 7 cut(s) 32, 153, 180, 240, 307, 325, 361
SfaNI GCATC 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 210
SgeI CNNG 8 cut(s) 36, 119, 124, 184, 269, 278, 311, 364
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 4 cut(s) 197, 215, 242, 334
SsiI CCGC 4 cut(s) 39, 89, 92, 158
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 307
TaqI TCGA 2 cut(s) 8, 210
TasI AATT 4 cut(s) 197, 215, 242, 334
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 32, 240
Tru9I TTAA 2 cut(s) 32, 240
TscAI CASTG 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 188, 287
TspRI CASTG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 3 cut(s) 215, 242, 334
XspI CTAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.