Rroxscaffold_1G00033400

glycine-rich RNA-binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
48238823 .. 48239032
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033400.1

Sequence Viewer

Length: 210 bp
ATGAGGGACGCCATCGAAGGCATAAACTACCAGGACCTTGACGACGCAACATTAATTACTATCAACGAGACTCAGTCCTGTCAAAGCGGTGGCAAAGGTGGCGGTAGTGGCGTCGCTCATCTTGAAGACGAGTTGGTGGCTATGGAAGTGGTGATGGAGGTTATGGCGATGGTGGCCGTTGTGAAGGTGAAGGCGGTGGAATCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.28

Weight (kDa)

4.3

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021240)

Species Orthologous Gene IDs
prunus_persica Prupe.1G176400_v2.0.a1 Prupe.5G141600_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00033400
rosa_samantha Rh5AG318100 Rh5BG328300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 102, 194
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 2 cut(s) 9, 111
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 174
AseI ATTAAT 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 163, 199
AvaII GGWCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 132
BccI CCATC 3 cut(s) 20, 148, 163
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 132
BsaHI GRCGYC 2 cut(s) 9, 111
BseBI CCWGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 176
BspACI CCGC 3 cut(s) 87, 102, 194
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 85
BssNI GRCGYC 2 cut(s) 9, 111
Bst2UI CCWGG 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 9, 111
BstDEI CTNAG 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 99, 108, 173
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 3 cut(s) 17, 53, 100
CviJI RGCY 2 cut(s) 140, 176
CviKI_1 RGCY 2 cut(s) 140, 176
DdeI CTNAG 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 30
FaiI YATR 3 cut(s) 23, 143, 164
FaqI GGGAC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 176
HgaI GACGC 3 cut(s) 17, 53, 100
Hin1I GRCGYC 2 cut(s) 9, 111
HinfI GANTC 2 cut(s) 70, 200
HphI GGTGA 2 cut(s) 163, 199
Hpy188III TCNNGA 1 cut(s) 122
Hpy99I CGWCG 2 cut(s) 47, 116
HpyAV CCTTC 3 cut(s) 11, 178, 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 108, 173
HpyF3I CTNAG 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 9, 111
LpnPI CCDG 3 cut(s) 17, 44, 91
MboII GAAGA 1 cut(s) 137
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 1 cut(s) 151
MseI TTAA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 99, 108, 173
PfeI GAWTC 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 73
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 32
SetI ASST 4 cut(s) 39, 100, 162, 189
SgeI CNNG 7 cut(s) 43, 44, 50, 79, 90, 134, 142
SinI GGWCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 54
SsiI CCGC 3 cut(s) 87, 102, 194
StyD4I CCNGG 1 cut(s) 30
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 34
VspI ATTAAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.