Prupe.1G206700_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0020418
Physical Location & Seq
Forward (+)
21021108 .. 21023453
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G206700.1_v2.0.a1.CDS.7

Sequence Viewer

Length: 807 bp
TGTCTATCGTTGAGCAACATTCCTATCAGTCAAACATATTCTCCAGATGTCAAACATGAGCTGTTCATGCTTTCTTTACCTGCAATTTTGGGTCAGGCCATTGATCCCTTAGCACAGCTAATGGAGACTGCTTACATTGGTAGATTGGGTTCTGTGGAGTTGGCTTCAGCTGGTATTTCAATGAACATCTTCAATTATATATCAAAGCTATTTAATATCCCTCTCCTCAGTGTTGCTACATCTTTTGTTGCTGAAGATCTTGCAAAGAGTGAAAGTATAGCTTCTACTTCAGTGTCTACAGCTTTACTATTATCAGTGGGGATTGGGATTTTTGAGGCCGTAGCCTTGTGTTTGGGATCTGGATTGTTTCTGAATATGATGGCCATATCAATGGACTCACCTATGCGCATTCCTGCAGAACGGTTTCTTTCACTAAGACCATTTTCTTACAACCACACATGTACACACCTCTATGTGTGTATTGGTAATCTCCTAGCTGCATTTTTATTACCCATCCTTATGTATTATTTTGGTTTGGGTGTAACTGGTGCAGCCCTTTCCACTGTTATATCTCATGGTTTTCTTCTTGGAACAACTCTTGCTGTTCTTACTACCTTGACATTGGGAACATCAATGGCTGCTCGTCAAGGTCCAGTAGCTATGGCTGCTCATCAGATATGTATACAAGTTTGGTTGGCTGTATCCCTTCTAACTGATGCAATGGCTGCATCTGGTCAGGTGATTGCTACTTATTTATGTAAAGGTGAATACAAAATTGTGAAAGAAGTTGCTGACTTCGTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE Polysacc_synt_C

Protein Analysis

269

Amino Acids

28.47

Weight (kDa)

5.67

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 805
Acc16I TGCGCA 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 88
AccI GTMKAC 2 cut(s) 296, 682
AclWI GGATC 2 cut(s) 98, 364
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 3 cut(s) 150, 273, 273
AfaI GTAC 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 2 cut(s) 180, 193
AluBI AGCT 8 cut(s) 61, 118, 170, 208, 281, 302, 497, 659
AluI AGCT 8 cut(s) 61, 118, 170, 208, 281, 302, 497, 659
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 98, 364
AoxI GGCC 3 cut(s) 96, 336, 381
ApeKI GCWGC 5 cut(s) 497, 551, 638, 665, 725
Asp700I GAANNNNTTC 2 cut(s) 188, 423
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 390, 751, 776
AvaII GGWCC 1 cut(s) 650
BalI TGGCCA 1 cut(s) 383
BbvI GCAGC 5 cut(s) 484, 563, 625, 652, 712
BccI CCATC 2 cut(s) 373, 521
BceAI ACGGC 1 cut(s) 323
BciVI GTATCC 1 cut(s) 712
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 2 cut(s) 297, 414
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 712
BglII AGATCT 1 cut(s) 256
BisI GCNGC 5 cut(s) 498, 552, 639, 666, 726
BlsI GCNGC 5 cut(s) 499, 553, 640, 667, 727
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 650
BmsI GCATC 2 cut(s) 706, 737
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bse1I ACTGG 2 cut(s) 550, 653
Bse3DI GCAATG 1 cut(s) 726
BseGI GGATG 1 cut(s) 513
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 550, 653
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 5 cut(s) 484, 563, 625, 652, 712
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 3 cut(s) 98, 338, 383
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 3 cut(s) 98, 338, 383
Bsp1407I TGTACA 1 cut(s) 461
Bsp143I GATC 3 cut(s) 103, 256, 356
BspANI GGCC 3 cut(s) 98, 338, 383
BspCNI CTCAG 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 98, 364
BsrDI GCAATG 1 cut(s) 726
BsrGI TGTACA 1 cut(s) 461
BsrI ACTGG 2 cut(s) 550, 653
BssMI GATC 3 cut(s) 103, 256, 356
BssNAI GTATAC 1 cut(s) 683
Bst1107I GTATAC 1 cut(s) 683
Bst4CI ACNGT 2 cut(s) 423, 565
BstAPI GCANNNNNTGC 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 461
BstDEI CTNAG 3 cut(s) 109, 227, 434
BstF5I GGATG 1 cut(s) 513
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 3 cut(s) 106, 259, 359
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 103, 256, 356
BstMWI GCNNNNNNNGC 3 cut(s) 67, 665, 725
BstNSI RCATGY 1 cut(s) 462
BstSFI CTRYAG 2 cut(s) 297, 414
BstV1I GCAGC 5 cut(s) 484, 563, 625, 652, 712
BstX2I RGATCY 2 cut(s) 256, 356
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 2 cut(s) 256, 356
BstZ17I GTATAC 1 cut(s) 683
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 3 cut(s) 98, 338, 383
BtsCI GGATG 1 cut(s) 513
BtsIMutI CAGTG 4 cut(s) 235, 297, 321, 561
BveI ACCTGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 650
Csp6I GTAC 1 cut(s) 462
CviAII CATG 4 cut(s) 56, 67, 459, 575
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 3 cut(s) 109, 227, 434
DpnI GATC 3 cut(s) 105, 258, 358
DpnII GATC 3 cut(s) 103, 256, 356
EaeI YGGCCR 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 650
Eco57I CTGAAG 3 cut(s) 150, 273, 273
FaeI CATG 4 cut(s) 59, 70, 462, 578
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 4 cut(s) 55, 66, 458, 574
FblI GTMKAC 2 cut(s) 296, 682
Fnu4HI GCNGC 5 cut(s) 498, 552, 639, 666, 726
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 5 cut(s) 498, 552, 639, 666, 726
FspAI RTGCGCAY 1 cut(s) 407
FspBI CTAG 1 cut(s) 494
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 1 cut(s) 407
GluI GCNGC 5 cut(s) 498, 552, 639, 666, 726
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 3 cut(s) 98, 338, 383
HhaI GCGC 1 cut(s) 408
Hin1II CATG 4 cut(s) 59, 70, 462, 578
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HinfI GANTC 1 cut(s) 395
HphI GGTGA 3 cut(s) 390, 751, 776
Hpy166II GTNNAC 3 cut(s) 297, 464, 683
Hpy188I TCNGA 2 cut(s) 372, 675
Hpy188III TCNNGA 2 cut(s) 44, 360
Hpy8I GTNNAC 3 cut(s) 297, 464, 683
HpyAV CCTTC 1 cut(s) 716
HpyCH4III ACNGT 2 cut(s) 423, 565
HpyCH4V TGCA 7 cut(s) 83, 263, 416, 500, 551, 719, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 665, 725
HpyF3I CTNAG 3 cut(s) 109, 227, 434
Hsp92II CATG 4 cut(s) 59, 70, 462, 578
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 3 cut(s) 103, 256, 356
Lsp1109I GCAGC 5 cut(s) 484, 563, 625, 652, 712
LweI GCATC 2 cut(s) 706, 737
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 541
MalI GATC 3 cut(s) 105, 258, 358
MboI GATC 3 cut(s) 103, 256, 356
MboII GAAGA 3 cut(s) 181, 266, 575
MflI RGATCY 2 cut(s) 256, 356
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 3 cut(s) 84, 193, 774
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 4 cut(s) 231, 236, 328, 479
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 2 cut(s) 188, 423
MscI TGGCCA 1 cut(s) 383
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 3 cut(s) 389, 471, 518
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 67, 665, 725
NdeII GATC 3 cut(s) 103, 256, 356
NlaIII CATG 4 cut(s) 59, 70, 462, 578
NsbI TGCGCA 1 cut(s) 407
NspI RCATGY 1 cut(s) 462
PciI ACATGT 1 cut(s) 458
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 188, 423
PkrI GCNGC 5 cut(s) 499, 553, 640, 667, 727
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PscI ACATGT 1 cut(s) 458
PsiI TTATAA 1 cut(s) 805
PspPI GGNCC 1 cut(s) 650
PsrI GAACNNNNNNTAC 2 cut(s) 133, 165
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 2 cut(s) 256, 356
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 3 cut(s) 389, 471, 518
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 5 cut(s) 498, 552, 639, 666, 726
Sau3AI GATC 3 cut(s) 103, 256, 356
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 1 cut(s) 389
SfaNI GCATC 2 cut(s) 706, 737
SfcI CTRYAG 2 cut(s) 297, 414
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 389, 471, 518
Sse9I AATT 3 cut(s) 84, 193, 774
SspMI CTAG 1 cut(s) 494
TaaI ACNGT 2 cut(s) 423, 565
TasI AATT 3 cut(s) 84, 193, 774
TatI WGTACW 1 cut(s) 461
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 4 cut(s) 235, 297, 321, 568
TseI GCWGC 5 cut(s) 497, 551, 638, 665, 725
TspDTI ATGAA 2 cut(s) 55, 197
TspRI CASTG 4 cut(s) 235, 297, 321, 568
VpaK11BI GGWCC 1 cut(s) 650
XceI RCATGY 1 cut(s) 462
XmiI GTMKAC 2 cut(s) 296, 682
XmnI GAANNNNTTC 2 cut(s) 188, 423
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.