Prupe.4G274900_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
22927440 .. 22929227
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G274900.1

Sequence Viewer

Length: 588 bp
ATGCTTTCTTTACCTGCAATTTTGGGTCAGGCCATTGATCCCTTAGCACAGCTAATGGAGACTGCTTACATTGGTAGATTGGGTTCTGTGGAGTTGGCTTCAGCTGGTATTTCAATGAACATCTTCAATTATATATCAAAGCTATTTAATATCCCTCTCCTCAGTGTTGCTACATCTTTTGTTGCTGAAGATCTTGCAAAGAGTGAAAGTATAGCAAAGAGTGCAAAGAGTGGTGGTTTTCTTCTTGGAACAACTCTTGCTGTTCTTACTACCTTGACATTGGGAACATCAATGGCTGCTCGTCAAGGTCCAGTAGCTATGGCTGCTCATCAGATATGTATACAAGTTTGGTTGGCTGTATCCCTTCTAACTGATGCAATGGCTGCATCTGGTCAGGCCCTGATTGCTACTTATTTATGTAAAGGTGAATACAAAATTGTGAAAGAAGTTGCTGACTCCGTGTTAAAGGGTCTAAAAGAAATGGTTGAGTGTTTGTCTGGAACTTTGACTAAGTCAACTGATGCTATTGGGCAAGACGATATTGAAGGTCCAGGAATGAAACCAACAAACCTCCTGAGGTTTGAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

20.43

Weight (kDa)

5.22

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 340
AclWI GGATC 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 84, 207
AgsI TTSAA 4 cut(s) 114, 127, 545, 584
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 4 cut(s) 52, 104, 142, 317
AluI AGCT 4 cut(s) 52, 104, 142, 317
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 400
AoxI GGCC 2 cut(s) 30, 396
ApeKI GCWGC 3 cut(s) 296, 323, 383
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 3 cut(s) 308, 397, 548
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 2 cut(s) 308, 548
AxyI CCTNAGG 1 cut(s) 575
BbvI GCAGC 3 cut(s) 283, 310, 370
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 370
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 297, 324, 384
BlsI GCNGC 3 cut(s) 298, 325, 385
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 308, 548
BmgT120I GGNCC 3 cut(s) 308, 397, 548
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 3 cut(s) 364, 395, 511
Bpu10I CCTNAGC 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 552
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 175, 566
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 283, 310, 370
BshFI GGCC 2 cut(s) 32, 398
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 2 cut(s) 32, 398
Bsp143I GATC 2 cut(s) 37, 190
BspANI GGCC 2 cut(s) 32, 398
BspCNI CTCAG 2 cut(s) 174, 567
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 311
BssMI GATC 2 cut(s) 37, 190
BssNAI GTATAC 1 cut(s) 341
Bst1107I GTATAC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 552
BstAPI GCANNNNNTGC 2 cut(s) 221, 383
BstDEI CTNAG 4 cut(s) 43, 161, 510, 575
BstKTI GATC 2 cut(s) 40, 193
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 37, 190
BstMWI GCNNNNNNNGC 4 cut(s) 221, 323, 383, 404
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstV1I GCAGC 3 cut(s) 283, 310, 370
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 341
Bsu36I CCTNAGG 1 cut(s) 575
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 32, 398
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 400
Cfr13I GGNCC 3 cut(s) 308, 397, 548
DdeI CTNAG 4 cut(s) 43, 161, 510, 575
DpnI GATC 2 cut(s) 39, 192
DpnII GATC 2 cut(s) 37, 190
Eco47I GGWCC 2 cut(s) 308, 548
Eco57I CTGAAG 2 cut(s) 84, 207
Eco81I CCTNAGG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 550
FaiI YATR 7 cut(s) 132, 134, 212, 320, 337, 341, 418
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 297, 324, 384
Fsp4HI GCNGC 3 cut(s) 297, 324, 384
GluI GCNGC 3 cut(s) 297, 324, 384
HaeIII GGCC 2 cut(s) 32, 398
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 1 cut(s) 455
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 341, 516
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 2 cut(s) 498, 574
Hpy8I GTNNAC 2 cut(s) 341, 516
HpyAV CCTTC 2 cut(s) 374, 539
HpyCH4V TGCA 5 cut(s) 17, 197, 224, 377, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 323, 383, 404
HpyF3I CTNAG 4 cut(s) 43, 161, 510, 575
Kzo9I GATC 2 cut(s) 37, 190
Lsp1109I GCAGC 3 cut(s) 283, 310, 370
LweI GCATC 3 cut(s) 364, 395, 511
MalI GATC 2 cut(s) 39, 192
MboI GATC 2 cut(s) 37, 190
MboII GAAGA 3 cut(s) 115, 200, 233
MflI RGATCY 1 cut(s) 190
MluCI AATT 3 cut(s) 18, 127, 435
MlyI GAGTC 1 cut(s) 449
MnlI CCTC 4 cut(s) 165, 170, 570, 581
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 147, 464
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 4 cut(s) 221, 323, 383, 404
NdeII GATC 2 cut(s) 37, 190
PdmI GAANNNNTTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 511
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 298, 325, 385
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 3 cut(s) 308, 397, 548
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 147, 464
SatI GCNGC 3 cut(s) 297, 324, 384
Sau3AI GATC 2 cut(s) 37, 190
Sau96I GGNCC 3 cut(s) 308, 397, 548
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 552
SfaNI GCATC 3 cut(s) 364, 395, 511
SinI GGWCC 2 cut(s) 308, 548
Sse9I AATT 3 cut(s) 18, 127, 435
StyD4I CCNGG 1 cut(s) 550
TasI AATT 3 cut(s) 18, 127, 435
Tru1I TTAA 2 cut(s) 147, 464
Tru9I TTAA 2 cut(s) 147, 464
TscAI CASTG 1 cut(s) 169
TseI GCWGC 3 cut(s) 296, 323, 383
TspDTI ATGAA 2 cut(s) 131, 572
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 308, 548
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.