Prupe.7G029900_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0020418
Physical Location & Seq
Reverse (-)
5512405 .. 5516282
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G029900.1

Sequence Viewer

Length: 1044 bp
ATGGCCAAGCTTGGACAAAAGTCCGGAAGGTCTATTTTCCATATAATCTTCGAGGGTCCCACTGGGTTGCAATCGAAATTGATTTCGTCAGACATACTGCAACTGTGTATGACTCCTATGTTGCGTATACCAAATCTTCGAGGCTGTACCTGTCTATCGTTGAGCAACATTCCTATCAGTCAAACATATTCTCCAGATGTCAAACGTGAGCTGTTGATGCTTTCTTTACCTGCAATTTTGGGTCAGGCCATTGATCCCTTAGCACAGCTAATGGAGGCTGCTTACATTGGTAGATTGGGTTCTGTGGAGTTGGCTTCAGCTGGTATTTCAATGAACATCTTCAATTATATATCAAAGCTATTTAATATCCCTCTCCTCAGTGTTGCTACATCTTTTGTTGCTGAAGATCTTGCAAAGAGTGAAAGTATAGCTTCTACTTCAGTGGGGATTGGGATTTTTGAGGCCGTAGCCTTGTGTTTGGGATCTGGATTGTTTCTGAATATGATGGCCATATCAATGGACTCACCTATGCGCATTCCTGCAGAACGGTTTCTTTTACTAAGACCATTTTCACTAAGACCATTTTCTTACAACCACACATGTATTGGTAATCTCCCAGCTGCATTTTTATTACCCATCCTTATGTATTATTTTGGTTTGGGTGTAACTGGTGCAGCCCTTTCCACTGTTATATCTCAATACACTGTCACCTTTTTAATGATCTGGTTTTTAAATAAGAGAGCTATACTATTGCCTCCAAAGGTGGGATCATTGAAATTTGGTGGATACATAAAATCTGCTCATGGTTTTCTTCTTGGAACAACTCTTGCTGTTCTTACTACCTTGACATTGGGAACATCAATGGCTGCTCGTCAAGGTCCAGTAGCTATGGCTGCTCATCAGATATGTATACAAGTTTGGTTGGCTGTATCCCTTCTAACTGATGCAATGGCTGCATCTGGTCAGGCCCTGATTGCTACTTATTTATGTAAAGGTGAATACAAAATTGTGAAAGAAGTTGGTGACTCTGTGTTAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE Polysacc_synt_C

Protein Analysis

348

Amino Acids

37.24

Weight (kDa)

9.14

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 127, 910
AccIII TCCGGA 1 cut(s) 23
AclWI GGATC 3 cut(s) 248, 490, 775
AcoI YGGCCR 2 cut(s) 3, 507
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 3 cut(s) 300, 423, 423
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 3 cut(s) 330, 343, 775
AluBI AGCT 9 cut(s) 10, 211, 268, 320, 358, 431, 620, 743, 887
AluI AGCT 9 cut(s) 10, 211, 268, 320, 358, 431, 620, 743, 887
AlwI GGATC 3 cut(s) 248, 490, 775
AlwNI CAGNNNCTG 1 cut(s) 970
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 5 cut(s) 3, 246, 462, 507, 966
ApeKI GCWGC 6 cut(s) 278, 620, 674, 866, 893, 953
ApoI RAATTY 1 cut(s) 776
Asp700I GAANNNNTTC 2 cut(s) 338, 549
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 3 cut(s) 56, 878, 967
AsuHPI GGTGA 4 cut(s) 516, 700, 1007, 1034
AvaII GGWCC 2 cut(s) 56, 878
BalI TGGCCA 2 cut(s) 5, 509
BbvI GCAGC 6 cut(s) 265, 607, 686, 853, 880, 940
BccI CCATC 2 cut(s) 499, 644
BceAI ACGGC 1 cut(s) 449
BciVI GTATCC 2 cut(s) 779, 940
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 2 cut(s) 779, 940
BglII AGATCT 1 cut(s) 406
BisI GCNGC 6 cut(s) 279, 621, 675, 867, 894, 954
BlsI GCNGC 6 cut(s) 280, 622, 676, 868, 895, 955
Bme18I GGWCC 2 cut(s) 56, 878
BmgT120I GGNCC 3 cut(s) 56, 878, 967
BmiI GGNNCC 2 cut(s) 57, 58
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 3 cut(s) 207, 934, 965
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 3 cut(s) 67, 673, 881
Bse3DI GCAATG 1 cut(s) 954
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 3 cut(s) 67, 673, 881
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 6 cut(s) 265, 607, 686, 853, 880, 940
BseYI CCCAGC 1 cut(s) 616
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 5 cut(s) 5, 248, 464, 509, 968
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 764
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 5 cut(s) 5, 248, 464, 509, 968
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 5 cut(s) 253, 406, 482, 720, 767
BspANI GGCC 5 cut(s) 5, 248, 464, 509, 968
BspCNI CTCAG 1 cut(s) 390
BspEI TCCGGA 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 57, 58
BspMAI CTGCAG 1 cut(s) 544
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 3 cut(s) 248, 490, 775
BsrDI GCAATG 1 cut(s) 954
BsrI ACTGG 3 cut(s) 67, 673, 881
BssMI GATC 5 cut(s) 253, 406, 482, 720, 767
BssNAI GTATAC 2 cut(s) 128, 911
Bst1107I GTATAC 2 cut(s) 128, 911
Bst4CI ACNGT 4 cut(s) 105, 549, 688, 706
BstAPI GCANNNNNTGC 1 cut(s) 953
BstDEI CTNAG 4 cut(s) 259, 377, 560, 575
BstF5I GGATG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 5 cut(s) 256, 409, 485, 723, 770
BstMBI GATC 5 cut(s) 253, 406, 482, 720, 767
BstMWI GCNNNNNNNGC 4 cut(s) 217, 893, 953, 974
BstNSI RCATGY 1 cut(s) 603
BstPAI GACNNNNGTC 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 540
BstV1I GCAGC 6 cut(s) 265, 607, 686, 853, 880, 940
BstX2I RGATCY 2 cut(s) 406, 482
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 2 cut(s) 406, 482
BstZ17I GTATAC 2 cut(s) 128, 911
BsuI GTATCC 2 cut(s) 779, 940
BsuRI GGCC 5 cut(s) 5, 248, 464, 509, 968
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 5 cut(s) 60, 385, 447, 684, 702
BveI ACCTGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 970
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 3 cut(s) 56, 878, 967
Csp6I GTAC 1 cut(s) 147
CviAII CATG 2 cut(s) 600, 803
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 4 cut(s) 259, 377, 560, 575
DpnI GATC 5 cut(s) 255, 408, 484, 722, 769
DpnII GATC 5 cut(s) 253, 406, 482, 720, 767
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 3, 507
Eco47I GGWCC 2 cut(s) 56, 878
Eco57I CTGAAG 3 cut(s) 300, 423, 423
EcoO109I RGGNCCY 2 cut(s) 56, 967
FaeI CATG 2 cut(s) 603, 806
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 1 cut(s) 42
FatI CATG 2 cut(s) 599, 802
FblI GTMKAC 2 cut(s) 127, 910
Fnu4HI GCNGC 6 cut(s) 279, 621, 675, 867, 894, 954
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 6 cut(s) 279, 621, 675, 867, 894, 954
FspAI RTGCGCAY 1 cut(s) 533
FspI TGCGCA 1 cut(s) 533
GlaI GCGC 1 cut(s) 533
GluI GCNGC 6 cut(s) 279, 621, 675, 867, 894, 954
GsaI CCCAGC 1 cut(s) 620
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 5 cut(s) 5, 248, 464, 509, 968
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 534
Hin1II CATG 2 cut(s) 603, 806
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 112, 521, 1025
HpaII CCGG 1 cut(s) 24
HphI GGTGA 4 cut(s) 516, 700, 1007, 1034
Hpy166II GTNNAC 2 cut(s) 128, 911
Hpy188I TCNGA 3 cut(s) 91, 498, 903
Hpy188III TCNNGA 3 cut(s) 24, 194, 486
Hpy8I GTNNAC 2 cut(s) 128, 911
HpyAV CCTTC 2 cut(s) 21, 944
HpyCH4III ACNGT 4 cut(s) 105, 549, 688, 706
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 9 cut(s) 70, 100, 233, 413, 542, 623, 674, 947, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 893, 953, 974
HpyF3I CTNAG 4 cut(s) 259, 377, 560, 575
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 2 cut(s) 603, 806
HspAI GCGC 1 cut(s) 532
KflI GGGWCCC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 5 cut(s) 253, 406, 482, 720, 767
Lsp1109I GCAGC 6 cut(s) 265, 607, 686, 853, 880, 940
LweI GCATC 3 cut(s) 207, 934, 965
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 664, 706, 1022
MalI GATC 5 cut(s) 255, 408, 484, 722, 769
MboI GATC 5 cut(s) 253, 406, 482, 720, 767
MboII GAAGA 5 cut(s) 40, 128, 331, 416, 803
MflI RGATCY 2 cut(s) 406, 482
MlsI TGGCCA 2 cut(s) 5, 509
MluCI AATT 5 cut(s) 77, 234, 343, 776, 1005
MluNI TGGCCA 2 cut(s) 5, 509
MlyI GAGTC 3 cut(s) 106, 515, 1019
MnlI CCTC 7 cut(s) 46, 134, 268, 381, 386, 454, 765
Mox20I TGGCCA 2 cut(s) 5, 509
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 2 cut(s) 338, 549
MscI TGGCCA 2 cut(s) 5, 509
MseI TTAA 4 cut(s) 363, 716, 731, 1034
MslI CAYNNNNRTG 2 cut(s) 515, 641
Msp20I TGGCCA 2 cut(s) 5, 509
MspA1I CMGCKG 2 cut(s) 320, 620
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 217, 893, 953, 974
NdeII GATC 5 cut(s) 253, 406, 482, 720, 767
NlaIII CATG 2 cut(s) 603, 806
NlaIV GGNNCC 2 cut(s) 57, 58
NmuCI GTSAC 2 cut(s) 706, 1022
NsbI TGCGCA 1 cut(s) 533
NspI RCATGY 1 cut(s) 603
PciI ACATGT 1 cut(s) 599
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 2 cut(s) 338, 549
PkrI GCNGC 6 cut(s) 280, 622, 676, 868, 895, 955
PleI GAGTC 3 cut(s) 106, 515, 1019
PpsI GAGTC 3 cut(s) 106, 515, 1019
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 1 cut(s) 599
PshAI GACNNNNGTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 57, 58
PspPI GGNCC 3 cut(s) 56, 878, 967
PspPPI RGGWCCY 1 cut(s) 56
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 970
PsuI RGATCY 2 cut(s) 406, 482
PvuII CAGCTG 2 cut(s) 320, 620
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 2 cut(s) 515, 641
SaqAI TTAA 4 cut(s) 363, 716, 731, 1034
SatI GCNGC 6 cut(s) 279, 621, 675, 867, 894, 954
Sau3AI GATC 5 cut(s) 253, 406, 482, 720, 767
Sau96I GGNCC 3 cut(s) 56, 878, 967
SchI GAGTC 3 cut(s) 106, 515, 1019
SfaNI GCATC 3 cut(s) 207, 934, 965
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 2 cut(s) 56, 878
SmiMI CAYNNNNRTG 2 cut(s) 515, 641
Sse9I AATT 5 cut(s) 77, 234, 343, 776, 1005
TaaI ACNGT 4 cut(s) 105, 549, 688, 706
TaiI ACGT 1 cut(s) 208
TaqI TCGA 3 cut(s) 51, 74, 139
TasI AATT 5 cut(s) 77, 234, 343, 776, 1005
Tru1I TTAA 4 cut(s) 363, 716, 731, 1034
Tru9I TTAA 4 cut(s) 363, 716, 731, 1034
TscAI CASTG 5 cut(s) 67, 385, 447, 691, 709
TseFI GTSAC 2 cut(s) 706, 1022
TseI GCWGC 6 cut(s) 278, 620, 674, 866, 893, 953
Tsp45I GTSAC 2 cut(s) 706, 1022
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 5 cut(s) 67, 385, 447, 691, 709
VpaK11BI GGWCC 2 cut(s) 56, 878
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 603
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmiI GTMKAC 2 cut(s) 127, 910
XmnI GAANNNNTTC 2 cut(s) 338, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.