Prupe.3G126900_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0020418
Physical Location & Seq
Reverse (-)
11857564 .. 11862305
4742 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G126900.1

Sequence Viewer

Length: 987 bp
ATGGCCAAGCTTGGACAAAAGTCCGGAAGGTCTATTTTCCATATAATCTTCGAGGGTCCCACTGGGTTGCAGTCGAAATTGATTTCGTCAGACATACTGCAACTGTGTATGACTCCTATTACCTGTCTATCGTTGAGCAACATTCCTATCAGTCAAACATATTCTCCAGATGTCAAACGTGAGCTGTTGATGCTTTCTTTACCTGCAATTTTGGGTCAGGCCATTGATCCCTTAGCACAGCTAATGGAGGCTGCTTACATTGGTAGATTGGGTTCTGTGGAGTTGGCTTCAGCTGGTATTTCAATGAACATCTTCAATTATATATCAAAGCTATTTAATATCCCTCTCCTCAGTGTTGCTACATCTTTTGTTGCTGAAGATCTTGCAAAGAGTGAAAGTATAGCTTCTACTTCAGTGGGGATTGGGATTTTTGAGGCCGTAGCCTTGTGTTTGGGATCTGGATTGTTTCTGAATATGATGGCCATATCAATGGACTCAACTATGCGCATTCCTGTAGAACAGTTTCTTTCACTAAGACCATTTTCTTACAACCACACATGTATTGGTAATCTCCTAGCTGCATTTTTATTACCCATCCTTATGTATTATTTTGGTTTGGGTGTAACTGGTGCAACCCTTTCCACTGTTATATCTCAATACACTGTCACCTTTTTAATGATCTGGTTTTTAAATAAGAGAGCTATACTATTGCCTCCAAAGGTGGGATCATTGCAATTTGATGGTTTTCTTCTTGGAACAACTCTTGCTGTTCTTACTACCTTGACATTGGGAACATCAATGGCTGCTCGTCAAGGTCCAGTAGCTATGGCTGCTCATCAGATATGTATACAAGTTTGGTTGGCTGTATCCCTTCTAACTGATGCAATGGCTGCATCTGGTCAGGCCCTGATTGCTACTTATTTATGTAAAGGTGAATACAAAATTGTGAAAGAAGTTGCTGACTCCGTGTTAAAGAACAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE Polysacc_synt_C

Protein Analysis

329

Amino Acids

35.18

Weight (kDa)

8.12

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 847
AccIII TCCGGA 1 cut(s) 23
AclWI GGATC 3 cut(s) 221, 463, 733
AcoI YGGCCR 2 cut(s) 3, 480
AcuI CTGAAG 3 cut(s) 273, 396, 396
AfiI CCNNNNNNNGG 1 cut(s) 722
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 2 cut(s) 303, 316
AluBI AGCT 9 cut(s) 10, 184, 241, 293, 331, 404, 578, 701, 824
AluI AGCT 9 cut(s) 10, 184, 241, 293, 331, 404, 578, 701, 824
AlwI GGATC 3 cut(s) 221, 463, 733
AlwNI CAGNNNCTG 1 cut(s) 907
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 5 cut(s) 3, 219, 435, 480, 903
ApeKI GCWGC 5 cut(s) 251, 578, 803, 830, 890
Asp700I GAANNNNTTC 2 cut(s) 311, 522
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 3 cut(s) 56, 815, 904
AsuHPI GGTGA 2 cut(s) 658, 944
AvaII GGWCC 2 cut(s) 56, 815
BalI TGGCCA 2 cut(s) 5, 482
BbvI GCAGC 5 cut(s) 238, 565, 790, 817, 877
BccI CCATC 3 cut(s) 472, 602, 734
BceAI ACGGC 1 cut(s) 422
BciVI GTATCC 1 cut(s) 877
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 877
BglII AGATCT 1 cut(s) 379
BisI GCNGC 5 cut(s) 252, 579, 804, 831, 891
BlsI GCNGC 5 cut(s) 253, 580, 805, 832, 892
Bme18I GGWCC 2 cut(s) 56, 815
BmgT120I GGNCC 3 cut(s) 56, 815, 904
BmiI GGNNCC 2 cut(s) 57, 58
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 3 cut(s) 180, 871, 902
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse1I ACTGG 3 cut(s) 67, 631, 818
Bse3DI GCAATG 2 cut(s) 728, 891
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMI GCAATG 2 cut(s) 728, 891
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 3 cut(s) 67, 631, 818
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 5 cut(s) 238, 565, 790, 817, 877
BshFI GGCC 5 cut(s) 5, 221, 437, 482, 905
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 722
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 5 cut(s) 5, 221, 437, 482, 905
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 5 cut(s) 226, 379, 455, 678, 725
BspANI GGCC 5 cut(s) 5, 221, 437, 482, 905
BspCNI CTCAG 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 57, 58
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 3 cut(s) 221, 463, 733
BsrDI GCAATG 2 cut(s) 728, 891
BsrI ACTGG 3 cut(s) 67, 631, 818
BssMI GATC 5 cut(s) 226, 379, 455, 678, 725
BssNAI GTATAC 1 cut(s) 848
Bst1107I GTATAC 1 cut(s) 848
Bst4CI ACNGT 4 cut(s) 105, 522, 646, 664
BstAPI GCANNNNNTGC 1 cut(s) 890
BstDEI CTNAG 3 cut(s) 232, 350, 533
BstF5I GGATG 1 cut(s) 594
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 5 cut(s) 229, 382, 458, 681, 728
BstMBI GATC 5 cut(s) 226, 379, 455, 678, 725
BstMWI GCNNNNNNNGC 4 cut(s) 190, 830, 890, 911
BstNSI RCATGY 1 cut(s) 561
BstPAI GACNNNNGTC 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 5 cut(s) 238, 565, 790, 817, 877
BstX2I RGATCY 2 cut(s) 379, 455
BstXI CCANNNNNNTGG 1 cut(s) 490
BstYI RGATCY 2 cut(s) 379, 455
BstZ17I GTATAC 1 cut(s) 848
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 5 cut(s) 5, 221, 437, 482, 905
BtsCI GGATG 1 cut(s) 594
BtsIMutI CAGTG 5 cut(s) 60, 358, 420, 642, 660
BveI ACCTGC 1 cut(s) 211
CaiI CAGNNNCTG 1 cut(s) 907
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 3 cut(s) 56, 815, 904
CviAII CATG 1 cut(s) 558
DdeI CTNAG 3 cut(s) 232, 350, 533
DpnI GATC 5 cut(s) 228, 381, 457, 680, 727
DpnII GATC 5 cut(s) 226, 379, 455, 678, 725
DraI TTTAAA 1 cut(s) 690
EaeI YGGCCR 2 cut(s) 3, 480
Eco47I GGWCC 2 cut(s) 56, 815
Eco57I CTGAAG 3 cut(s) 273, 396, 396
EcoO109I RGGNCCY 2 cut(s) 56, 904
FaeI CATG 1 cut(s) 561
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 557
FblI GTMKAC 1 cut(s) 847
Fnu4HI GCNGC 5 cut(s) 252, 579, 804, 831, 891
FokI GGATG 1 cut(s) 581
Fsp4HI GCNGC 5 cut(s) 252, 579, 804, 831, 891
FspAI RTGCGCAY 1 cut(s) 506
FspBI CTAG 1 cut(s) 575
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 1 cut(s) 506
GluI GCNGC 5 cut(s) 252, 579, 804, 831, 891
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 5 cut(s) 5, 221, 437, 482, 905
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 507
Hin1II CATG 1 cut(s) 561
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 112, 494, 962
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 658, 944
Hpy166II GTNNAC 1 cut(s) 848
Hpy188I TCNGA 3 cut(s) 91, 471, 840
Hpy188III TCNNGA 3 cut(s) 24, 167, 459
Hpy8I GTNNAC 1 cut(s) 848
HpyAV CCTTC 2 cut(s) 21, 881
HpyCH4III ACNGT 4 cut(s) 105, 522, 646, 664
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 9 cut(s) 70, 100, 206, 386, 581, 632, 733, 884, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 830, 890, 911
HpyF3I CTNAG 3 cut(s) 232, 350, 533
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 1 cut(s) 561
HspAI GCGC 1 cut(s) 505
KflI GGGWCCC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 5 cut(s) 226, 379, 455, 678, 725
Lsp1109I GCAGC 5 cut(s) 238, 565, 790, 817, 877
LweI GCATC 3 cut(s) 180, 871, 902
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 2 cut(s) 622, 664
MalI GATC 5 cut(s) 228, 381, 457, 680, 727
MboI GATC 5 cut(s) 226, 379, 455, 678, 725
MboII GAAGA 4 cut(s) 40, 304, 389, 740
MflI RGATCY 2 cut(s) 379, 455
MlsI TGGCCA 2 cut(s) 5, 482
MluCI AATT 5 cut(s) 77, 207, 316, 734, 942
MluNI TGGCCA 2 cut(s) 5, 482
MlyI GAGTC 3 cut(s) 106, 488, 956
MnlI CCTC 6 cut(s) 46, 241, 354, 359, 427, 723
Mox20I TGGCCA 2 cut(s) 5, 482
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 2 cut(s) 311, 522
MscI TGGCCA 2 cut(s) 5, 482
MseI TTAA 4 cut(s) 336, 674, 689, 971
MslI CAYNNNNRTG 2 cut(s) 488, 599
Msp20I TGGCCA 2 cut(s) 5, 482
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 507
MwoI GCNNNNNNNGC 4 cut(s) 190, 830, 890, 911
NdeII GATC 5 cut(s) 226, 379, 455, 678, 725
NlaIII CATG 1 cut(s) 561
NlaIV GGNNCC 2 cut(s) 57, 58
NmuCI GTSAC 1 cut(s) 664
NsbI TGCGCA 1 cut(s) 506
NspI RCATGY 1 cut(s) 561
PciI ACATGT 1 cut(s) 557
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 2 cut(s) 311, 522
PkrI GCNGC 5 cut(s) 253, 580, 805, 832, 892
PleI GAGTC 3 cut(s) 106, 488, 956
PpsI GAGTC 3 cut(s) 106, 488, 956
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 1 cut(s) 557
PshAI GACNNNNGTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 57, 58
PspPI GGNCC 3 cut(s) 56, 815, 904
PspPPI RGGWCCY 1 cut(s) 56
PsrI GAACNNNNNNTAC 2 cut(s) 256, 288
PstNI CAGNNNCTG 1 cut(s) 907
PsuI RGATCY 2 cut(s) 379, 455
PvuII CAGCTG 1 cut(s) 293
RseI CAYNNNNRTG 2 cut(s) 488, 599
SaqAI TTAA 4 cut(s) 336, 674, 689, 971
SatI GCNGC 5 cut(s) 252, 579, 804, 831, 891
Sau3AI GATC 5 cut(s) 226, 379, 455, 678, 725
Sau96I GGNCC 3 cut(s) 56, 815, 904
SchI GAGTC 3 cut(s) 106, 488, 956
SfaNI GCATC 3 cut(s) 180, 871, 902
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 2 cut(s) 56, 815
SmiMI CAYNNNNRTG 2 cut(s) 488, 599
Sse9I AATT 5 cut(s) 77, 207, 316, 734, 942
SspMI CTAG 1 cut(s) 575
TaaI ACNGT 4 cut(s) 105, 522, 646, 664
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 51, 74
TasI AATT 5 cut(s) 77, 207, 316, 734, 942
Tru1I TTAA 4 cut(s) 336, 674, 689, 971
Tru9I TTAA 4 cut(s) 336, 674, 689, 971
TscAI CASTG 5 cut(s) 67, 358, 420, 649, 667
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 5 cut(s) 251, 578, 803, 830, 890
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 5 cut(s) 67, 358, 420, 649, 667
VpaK11BI GGWCC 2 cut(s) 56, 815
XceI RCATGY 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 847
XmnI GAANNNNTTC 2 cut(s) 311, 522
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.