Prupe.7G009500_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0020418
Physical Location & Seq
Reverse (-)
1283978 .. 1287827
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G009500.1

Sequence Viewer

Length: 1098 bp
ATGGCCAAGCTTGGACAAAAGTCCGGAAGGTCTATTTTCTATATAATCTTCGAGGGTCCCACTGGGTTGCAATCGAAATTGATTTCGTCAGACATACTGCAACTGTGTATGACTCCTATGTTGCGTATACCAAATCTTCGAGGCTGTACCTGTCTATCGTTGAGCAACATTCCTATCAGTCAAACATATTGTCCAGATGTCAAACGTGAGCTGTTGATGCTTTCTTTACCTGCAATTTTGGGTCAGGCCATTGATCCCTTAGCACAGCTAATGGAGACTGCTTACATTGGTAGATTGGGTTCTGTGGAGTTGGCTGCAGCTGGTATTTCAATGAACATCTTCAATTATATATCAAAGCTATTTAATATCCCTCTCTTCAGTGTTGCTACATCTTTTGTTGCTGAAGATCTTGCAAAGAGTGAAAGTATAGCTTCTACTTCAGGAGACATTACTAATGGTAAACCCGAACGTACTGATGGAGTAACTGAGAGAAAGCAGGTATCTTCAGTGTCCACAGCTTTACTATTATCAGTGGGGATTGGGATTTTTGAGGCCGTAGCCTTGTCTTTGGGATCTGGATTGTTTCTGAATATGATGGCCATATCAATGGACTCACCTATGCGCATTCCTGCAGAACGGTTTCTTTCACTAAGACCATTTTCTTACAACCACACATGTATTGGTAATCTCCTAGCTGCATTTTTATTACCCATCCTTATGTATTATTTTGGTTTGGGTGTAACTGGTGCAGCCCTTTCCACTGTTATATCTCAATACACTGTCACCTTTTTAATGATCTGGTTTTTAAATAAGAGAGCTATACTATTGCCTCCAAAGGTGGGATCATTGCAATTTGGTGGTTTTCTTCTTGGAACAATTCTTGCTGTTCTTACTACCTTGACATTGGGAACATCAATGGCTGCTCGTCAAGGTCTAGTAGCTATGGCTGCTCATCAGATATGTATACAACTTTGGTTGGCTGTATCCCTTCTAACTAATGCAATGGCTGCATCTGGTCAGGCCCTGATTGCTACTTATTTATGTAAAGGTGAATACAAAATTGTGAAAGAAGTTGCTAACTCCGTGTTAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE Polysacc_synt_C

Protein Analysis

366

Amino Acids

39.14

Weight (kDa)

9.04

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 623
Acc36I ACCTGC 2 cut(s) 238, 487
AccI GTMKAC 2 cut(s) 127, 964
AccIII TCCGGA 1 cut(s) 23
AclWI GGATC 3 cut(s) 248, 580, 850
AcoI YGGCCR 2 cut(s) 3, 597
AcuI CTGAAG 4 cut(s) 361, 423, 423, 489
AfaI GTAC 2 cut(s) 148, 472
AfiI CCNNNNNNNGG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 674
AgsI TTSAA 2 cut(s) 330, 343
Alw26I GTCTC 2 cut(s) 269, 438
AlwI GGATC 3 cut(s) 248, 580, 850
AlwNI CAGNNNCTG 1 cut(s) 1024
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 5 cut(s) 3, 246, 552, 597, 1020
ApeKI GCWGC 7 cut(s) 314, 317, 695, 749, 920, 947, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 2 cut(s) 338, 639
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 56, 1021
AsuHPI GGTGA 3 cut(s) 606, 775, 1061
AvaII GGWCC 1 cut(s) 56
BalI TGGCCA 2 cut(s) 5, 599
BbvI GCAGC 7 cut(s) 301, 329, 682, 761, 907, 934, 994
BccI CCATC 3 cut(s) 470, 589, 719
BceAI ACGGC 1 cut(s) 539
BciVI GTATCC 1 cut(s) 994
BcoDI GTCTC 2 cut(s) 269, 438
BfaI CTAG 2 cut(s) 692, 935
BfmI CTRYAG 2 cut(s) 315, 630
BfuAI ACCTGC 2 cut(s) 238, 487
BfuI GTATCC 1 cut(s) 994
BglII AGATCT 1 cut(s) 406
BisI GCNGC 7 cut(s) 315, 318, 696, 750, 921, 948, 1008
BlsI GCNGC 7 cut(s) 316, 319, 697, 751, 922, 949, 1009
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 56, 1021
BmiI GGNNCC 2 cut(s) 57, 58
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 207, 1019
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse1I ACTGG 2 cut(s) 67, 748
Bse3DI GCAATG 2 cut(s) 845, 1008
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 1 cut(s) 711
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMI GCAATG 2 cut(s) 845, 1008
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 2 cut(s) 67, 748
BseXI GCAGC 7 cut(s) 301, 329, 682, 761, 907, 934, 994
BsgI GTGCAG 1 cut(s) 768
BshFI GGCC 5 cut(s) 5, 248, 554, 599, 1022
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 2 cut(s) 269, 438
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 5 cut(s) 5, 248, 554, 599, 1022
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 5 cut(s) 253, 406, 572, 795, 842
BspANI GGCC 5 cut(s) 5, 248, 554, 599, 1022
BspCNI CTCAG 1 cut(s) 478
BspEI TCCGGA 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 57, 58
BspMAI CTGCAG 2 cut(s) 319, 634
BspMI ACCTGC 2 cut(s) 238, 487
BspPI GGATC 3 cut(s) 248, 580, 850
BsrDI GCAATG 2 cut(s) 845, 1008
BsrI ACTGG 2 cut(s) 67, 748
BssMI GATC 5 cut(s) 253, 406, 572, 795, 842
BssNAI GTATAC 2 cut(s) 128, 965
Bst1107I GTATAC 2 cut(s) 128, 965
Bst4CI ACNGT 4 cut(s) 105, 639, 763, 781
Bst6I CTCTTC 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstDEI CTNAG 3 cut(s) 259, 486, 650
BstF5I GGATG 1 cut(s) 711
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 5 cut(s) 256, 409, 575, 798, 845
BstMAI GTCTC 2 cut(s) 269, 438
BstMBI GATC 5 cut(s) 253, 406, 572, 795, 842
BstMWI GCNNNNNNNGC 4 cut(s) 217, 947, 1007, 1028
BstNSI RCATGY 1 cut(s) 678
BstPAI GACNNNNGTC 1 cut(s) 19
BstSFI CTRYAG 2 cut(s) 315, 630
BstV1I GCAGC 7 cut(s) 301, 329, 682, 761, 907, 934, 994
BstX2I RGATCY 2 cut(s) 406, 572
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 2 cut(s) 406, 572
BstZ17I GTATAC 2 cut(s) 128, 965
BsuI GTATCC 1 cut(s) 994
BsuRI GGCC 5 cut(s) 5, 248, 554, 599, 1022
BtsCI GGATG 1 cut(s) 711
BtsIMutI CAGTG 6 cut(s) 60, 385, 513, 537, 759, 777
BveI ACCTGC 2 cut(s) 238, 487
CaiI CAGNNNCTG 1 cut(s) 1024
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 2 cut(s) 56, 1021
Csp6I GTAC 2 cut(s) 147, 471
CviAII CATG 1 cut(s) 675
CviQI GTAC 2 cut(s) 147, 471
DdeI CTNAG 3 cut(s) 259, 486, 650
DpnI GATC 5 cut(s) 255, 408, 574, 797, 844
DpnII GATC 5 cut(s) 253, 406, 572, 795, 842
DraI TTTAAA 1 cut(s) 807
EaeI YGGCCR 2 cut(s) 3, 597
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 4 cut(s) 361, 423, 423, 489
EcoO109I RGGNCCY 2 cut(s) 56, 1021
FaeI CATG 1 cut(s) 678
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 674
FblI GTMKAC 2 cut(s) 127, 964
Fnu4HI GCNGC 7 cut(s) 315, 318, 696, 750, 921, 948, 1008
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 7 cut(s) 315, 318, 696, 750, 921, 948, 1008
FspAI RTGCGCAY 1 cut(s) 623
FspBI CTAG 2 cut(s) 692, 935
FspI TGCGCA 1 cut(s) 623
GlaI GCGC 1 cut(s) 623
GluI GCNGC 7 cut(s) 315, 318, 696, 750, 921, 948, 1008
HaeIII GGCC 5 cut(s) 5, 248, 554, 599, 1022
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 624
Hin1II CATG 1 cut(s) 678
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 112, 611
HpaII CCGG 1 cut(s) 24
HphI GGTGA 3 cut(s) 606, 775, 1061
Hpy166II GTNNAC 4 cut(s) 128, 461, 513, 965
Hpy188I TCNGA 3 cut(s) 91, 588, 957
Hpy188III TCNNGA 4 cut(s) 24, 194, 441, 576
Hpy8I GTNNAC 4 cut(s) 128, 461, 513, 965
HpyAV CCTTC 2 cut(s) 21, 998
HpyCH4III ACNGT 4 cut(s) 105, 639, 763, 781
HpyCH4IV ACGT 2 cut(s) 205, 469
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 947, 1007, 1028
HpyF3I CTNAG 3 cut(s) 259, 486, 650
HpySE526I ACGT 2 cut(s) 205, 469
Hsp92II CATG 1 cut(s) 678
HspAI GCGC 1 cut(s) 622
KflI GGGWCCC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 5 cut(s) 253, 406, 572, 795, 842
Lsp1109I GCAGC 7 cut(s) 301, 329, 682, 761, 907, 934, 994
LweI GCATC 2 cut(s) 207, 1019
MaeI CTAG 2 cut(s) 692, 935
MaeII ACGT 2 cut(s) 205, 469
MaeIII GTNAC 3 cut(s) 481, 739, 781
MalI GATC 5 cut(s) 255, 408, 574, 797, 844
MboI GATC 5 cut(s) 253, 406, 572, 795, 842
MboII GAAGA 7 cut(s) 40, 128, 331, 367, 416, 495, 857
MflI RGATCY 2 cut(s) 406, 572
MlsI TGGCCA 2 cut(s) 5, 599
MluCI AATT 6 cut(s) 77, 234, 343, 851, 876, 1059
MluNI TGGCCA 2 cut(s) 5, 599
MlyI GAGTC 2 cut(s) 106, 605
MnlI CCTC 5 cut(s) 46, 134, 381, 544, 840
Mox20I TGGCCA 2 cut(s) 5, 599
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 2 cut(s) 338, 639
MscI TGGCCA 2 cut(s) 5, 599
MseI TTAA 4 cut(s) 363, 791, 806, 1088
MslI CAYNNNNRTG 2 cut(s) 605, 716
Msp20I TGGCCA 2 cut(s) 5, 599
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 624
MwoI GCNNNNNNNGC 4 cut(s) 217, 947, 1007, 1028
NdeII GATC 5 cut(s) 253, 406, 572, 795, 842
NlaIII CATG 1 cut(s) 678
NlaIV GGNNCC 2 cut(s) 57, 58
NmuCI GTSAC 1 cut(s) 781
NsbI TGCGCA 1 cut(s) 623
NspI RCATGY 1 cut(s) 678
PciI ACATGT 1 cut(s) 674
PctI GAATGC 1 cut(s) 624
PdmI GAANNNNTTC 2 cut(s) 338, 639
PkrI GCNGC 7 cut(s) 316, 319, 697, 751, 922, 949, 1009
PleI GAGTC 2 cut(s) 106, 605
PpsI GAGTC 2 cut(s) 106, 605
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 1 cut(s) 674
PshAI GACNNNNGTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 57, 58
PspPI GGNCC 2 cut(s) 56, 1021
PspPPI RGGWCCY 1 cut(s) 56
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
PstI CTGCAG 2 cut(s) 319, 634
PstNI CAGNNNCTG 1 cut(s) 1024
PsuI RGATCY 2 cut(s) 406, 572
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 148, 472
RsaNI GTAC 2 cut(s) 147, 471
RseI CAYNNNNRTG 2 cut(s) 605, 716
SaqAI TTAA 4 cut(s) 363, 791, 806, 1088
SatI GCNGC 7 cut(s) 315, 318, 696, 750, 921, 948, 1008
Sau3AI GATC 5 cut(s) 253, 406, 572, 795, 842
Sau96I GGNCC 2 cut(s) 56, 1021
SchI GAGTC 2 cut(s) 106, 605
SfaNI GCATC 2 cut(s) 207, 1019
SfcI CTRYAG 2 cut(s) 315, 630
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 605, 716
Sse9I AATT 6 cut(s) 77, 234, 343, 851, 876, 1059
SspMI CTAG 2 cut(s) 692, 935
TaaI ACNGT 4 cut(s) 105, 639, 763, 781
TaiI ACGT 2 cut(s) 208, 472
TaqI TCGA 3 cut(s) 51, 74, 139
TasI AATT 6 cut(s) 77, 234, 343, 851, 876, 1059
Tru1I TTAA 4 cut(s) 363, 791, 806, 1088
Tru9I TTAA 4 cut(s) 363, 791, 806, 1088
TscAI CASTG 6 cut(s) 67, 385, 513, 537, 766, 784
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 7 cut(s) 314, 317, 695, 749, 920, 947, 1007
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 1072
TspRI CASTG 6 cut(s) 67, 385, 513, 537, 766, 784
VpaK11BI GGWCC 1 cut(s) 56
XceI RCATGY 1 cut(s) 678
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XmiI GTMKAC 2 cut(s) 127, 964
XmnI GAANNNNTTC 2 cut(s) 338, 639
XspI CTAG 2 cut(s) 692, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.