Prupe.7G013600_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0020418
Physical Location & Seq
Forward (+)
1925421 .. 1929265
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G013600.1

Sequence Viewer

Length: 1089 bp
ATGGCCAAGCTTGGACAAAAGTCCGGAAGGTCTATTTTCCATATAATCTTCGAGGGTCCCACTGGGTTGCAATCTACCTGTCTATCGTTGAGCAACATTCCTATCAGTCAAACATATTCTCCAGATGTCAAACGTGAGCTGTTGATGCTTTCTTTACCTGCAATTTTTGGTCAGGCCATTGATCCCTTAGCACAGCTAATGGAGACTGCTTACATTGGTAGATTGGGTTTTGTGGAGTTGGCTTCAGCTGGTATTTCAATGAACATCTTCAATTATATATCAAAGCTATTTAATATCCCTCTCCTCAGTGTTGCTACATCTTTTGTTACTGAAGATCTTGCAAAGAGTGAACAAAATGGTTGGCTAGGAGACATTACTAATGGTAAACCCGAACGTACTGATGGAGTAACTGAGAGAAAGCAGCTATCTTCAATGTCTACAGCTTTACTATTATCAGTGGGGATTGGGATTTTTGAGGCCGTAGCCTTGTCTTTGGGATCTGGATTGTTTCTGAATATGATGGCCATATCAATGGACTCACCTATGCGCATTCCTGCAGAACGGTTTCTTTCACTAAGACCATTTTCTTACAACCACACATGTATTGGTAATCTCCTAGCTGCATTTTTATTACCCATCCTTATGTATTATTTTGGTTTGGGTGTAACTGGTGCAGCCCTTTCCACTGTTATATCTCAATACACTGTCACCTTTTTAATGATCTGGTTTTTAAATAAGAGAGCTATACTATTGCCTCCAAAGGTGGGATCATTGCAATTTGGTGGATACATAAAATCTGCTCATTCTTTCCCTAATTGCTTTTGTTTTCAACTCTGGGATGATACATGTGGTTTTCTTCTTGGAACAACTCTTGCTGTTCTTACTACCTTGACATTGGGAACATCAATGGCTGCTCGTCAAGGTCCAGTAGCTATGGCTGCTCATCAGATATGTATACAAGTTTGGTTGGTTGTATCCCTTCTAACTGATGCAATGGCTGCATCTGGTCAGGCCCTGATTGCTACTTATTTATGTAAAGGTGAATACAAAATTGTGAAAGAAGTTGCTGACTCCGTGTTAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE Polysacc_synt_C

Protein Analysis

363

Amino Acids

39.16

Weight (kDa)

8.11

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 166
AccI GTMKAC 2 cut(s) 437, 955
AccIII TCCGGA 1 cut(s) 23
AclWI GGATC 3 cut(s) 176, 505, 775
AcoI YGGCCR 2 cut(s) 3, 522
AcuI CTGAAG 2 cut(s) 228, 351
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 764
AflIII ACRYGT 2 cut(s) 599, 845
AgsI TTSAA 4 cut(s) 258, 271, 432, 830
Alw26I GTCTC 2 cut(s) 197, 363
AlwI GGATC 3 cut(s) 176, 505, 775
AlwNI CAGNNNCTG 1 cut(s) 1015
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 5 cut(s) 3, 174, 477, 522, 1011
ApeKI GCWGC 6 cut(s) 421, 620, 674, 911, 938, 998
Asp700I GAANNNNTTC 2 cut(s) 266, 564
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 3 cut(s) 56, 923, 1012
AsuHPI GGTGA 3 cut(s) 531, 700, 1052
AvaII GGWCC 2 cut(s) 56, 923
BalI TGGCCA 2 cut(s) 5, 524
BbvI GCAGC 6 cut(s) 433, 607, 686, 898, 925, 985
BccI CCATC 3 cut(s) 395, 514, 644
BceAI ACGGC 1 cut(s) 464
BciVI GTATCC 2 cut(s) 779, 985
BcoDI GTCTC 2 cut(s) 197, 363
BfaI CTAG 2 cut(s) 365, 617
BfmI CTRYAG 2 cut(s) 438, 555
BfuAI ACCTGC 1 cut(s) 166
BfuI GTATCC 2 cut(s) 779, 985
BglII AGATCT 1 cut(s) 334
BisI GCNGC 6 cut(s) 422, 621, 675, 912, 939, 999
BlsI GCNGC 6 cut(s) 423, 622, 676, 913, 940, 1000
Bme18I GGWCC 2 cut(s) 56, 923
BmgT120I GGNCC 3 cut(s) 56, 923, 1012
BmiI GGNNCC 2 cut(s) 57, 58
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 3 cut(s) 135, 979, 1010
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 3 cut(s) 67, 673, 926
Bse3DI GCAATG 2 cut(s) 770, 999
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 2 cut(s) 636, 844
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 2 cut(s) 770, 999
BseMII CTCAG 2 cut(s) 319, 402
BseNI ACTGG 3 cut(s) 67, 673, 926
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 6 cut(s) 433, 607, 686, 898, 925, 985
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 5 cut(s) 5, 176, 479, 524, 1013
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 2 cut(s) 197, 363
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 5 cut(s) 5, 176, 479, 524, 1013
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 5 cut(s) 181, 334, 497, 720, 767
BspANI GGCC 5 cut(s) 5, 176, 479, 524, 1013
BspCNI CTCAG 2 cut(s) 318, 403
BspEI TCCGGA 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 57, 58
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 176, 505, 775
BsrDI GCAATG 2 cut(s) 770, 999
BsrI ACTGG 3 cut(s) 67, 673, 926
BssMI GATC 5 cut(s) 181, 334, 497, 720, 767
BssNAI GTATAC 1 cut(s) 956
Bst1107I GTATAC 1 cut(s) 956
Bst4CI ACNGT 3 cut(s) 564, 688, 706
BstAPI GCANNNNNTGC 1 cut(s) 998
BstDEI CTNAG 4 cut(s) 187, 305, 411, 575
BstF5I GGATG 2 cut(s) 636, 844
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 5 cut(s) 184, 337, 500, 723, 770
BstMAI GTCTC 2 cut(s) 197, 363
BstMBI GATC 5 cut(s) 181, 334, 497, 720, 767
BstMWI GCNNNNNNNGC 4 cut(s) 145, 938, 998, 1019
BstNSI RCATGY 2 cut(s) 603, 849
BstPAI GACNNNNGTC 1 cut(s) 19
BstSFI CTRYAG 2 cut(s) 438, 555
BstV1I GCAGC 6 cut(s) 433, 607, 686, 898, 925, 985
BstX2I RGATCY 2 cut(s) 334, 497
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 334, 497
BstZ17I GTATAC 1 cut(s) 956
BsuI GTATCC 2 cut(s) 779, 985
BsuRI GGCC 5 cut(s) 5, 176, 479, 524, 1013
BtsCI GGATG 2 cut(s) 636, 844
BtsIMutI CAGTG 5 cut(s) 60, 313, 462, 684, 702
BveI ACCTGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 1015
CfoI GCGC 1 cut(s) 549
Cfr13I GGNCC 3 cut(s) 56, 923, 1012
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 600, 846
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 4 cut(s) 187, 305, 411, 575
DpnI GATC 5 cut(s) 183, 336, 499, 722, 769
DpnII GATC 5 cut(s) 181, 334, 497, 720, 767
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 3, 522
Eco47I GGWCC 2 cut(s) 56, 923
Eco57I CTGAAG 2 cut(s) 228, 351
EcoO109I RGGNCCY 2 cut(s) 56, 1012
FaeI CATG 2 cut(s) 603, 849
FaqI GGGAC 1 cut(s) 42
FatI CATG 2 cut(s) 599, 845
FblI GTMKAC 2 cut(s) 437, 955
Fnu4HI GCNGC 6 cut(s) 422, 621, 675, 912, 939, 999
FokI GGATG 2 cut(s) 623, 851
Fsp4HI GCNGC 6 cut(s) 422, 621, 675, 912, 939, 999
FspAI RTGCGCAY 1 cut(s) 548
FspBI CTAG 2 cut(s) 365, 617
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 1 cut(s) 548
GluI GCNGC 6 cut(s) 422, 621, 675, 912, 939, 999
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 5 cut(s) 5, 176, 479, 524, 1013
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 549
Hin1II CATG 2 cut(s) 603, 849
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 536, 1070
HpaII CCGG 1 cut(s) 24
HphI GGTGA 3 cut(s) 531, 700, 1052
Hpy166II GTNNAC 4 cut(s) 350, 386, 438, 956
Hpy188I TCNGA 2 cut(s) 513, 948
Hpy188III TCNNGA 3 cut(s) 24, 122, 501
Hpy8I GTNNAC 4 cut(s) 350, 386, 438, 956
HpyAV CCTTC 2 cut(s) 21, 989
HpyCH4III ACNGT 3 cut(s) 564, 688, 706
HpyCH4IV ACGT 2 cut(s) 133, 394
HpyCH4V TGCA 9 cut(s) 70, 161, 341, 557, 623, 674, 775, 992, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 938, 998, 1019
HpyF3I CTNAG 4 cut(s) 187, 305, 411, 575
HpySE526I ACGT 2 cut(s) 133, 394
Hsp92II CATG 2 cut(s) 603, 849
HspAI GCGC 1 cut(s) 547
KflI GGGWCCC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 5 cut(s) 181, 334, 497, 720, 767
Lsp1109I GCAGC 6 cut(s) 433, 607, 686, 898, 925, 985
LweI GCATC 3 cut(s) 135, 979, 1010
MaeI CTAG 2 cut(s) 365, 617
MaeII ACGT 2 cut(s) 133, 394
MaeIII GTNAC 4 cut(s) 325, 406, 664, 706
MalI GATC 5 cut(s) 183, 336, 499, 722, 769
MboI GATC 5 cut(s) 181, 334, 497, 720, 767
MboII GAAGA 5 cut(s) 40, 259, 344, 420, 848
MflI RGATCY 2 cut(s) 334, 497
MlsI TGGCCA 2 cut(s) 5, 524
MluCI AATT 5 cut(s) 162, 271, 776, 814, 1050
MluNI TGGCCA 2 cut(s) 5, 524
MlyI GAGTC 2 cut(s) 530, 1064
MnlI CCTC 5 cut(s) 46, 309, 314, 469, 765
Mox20I TGGCCA 2 cut(s) 5, 524
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 2 cut(s) 266, 564
MscI TGGCCA 2 cut(s) 5, 524
MseI TTAA 4 cut(s) 291, 716, 731, 1079
MslI CAYNNNNRTG 2 cut(s) 530, 641
Msp20I TGGCCA 2 cut(s) 5, 524
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 549
MwoI GCNNNNNNNGC 4 cut(s) 145, 938, 998, 1019
NdeII GATC 5 cut(s) 181, 334, 497, 720, 767
NlaIII CATG 2 cut(s) 603, 849
NlaIV GGNNCC 2 cut(s) 57, 58
NmuCI GTSAC 1 cut(s) 706
NsbI TGCGCA 1 cut(s) 548
NspI RCATGY 2 cut(s) 603, 849
PciI ACATGT 2 cut(s) 599, 845
PctI GAATGC 1 cut(s) 549
PdmI GAANNNNTTC 2 cut(s) 266, 564
PkrI GCNGC 6 cut(s) 423, 622, 676, 913, 940, 1000
PleI GAGTC 2 cut(s) 530, 1064
PpsI GAGTC 2 cut(s) 530, 1064
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 2 cut(s) 599, 845
PshAI GACNNNNGTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 57, 58
PspPI GGNCC 3 cut(s) 56, 923, 1012
PspPPI RGGWCCY 1 cut(s) 56
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 1015
PsuI RGATCY 2 cut(s) 334, 497
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 2 cut(s) 530, 641
SaqAI TTAA 4 cut(s) 291, 716, 731, 1079
SatI GCNGC 6 cut(s) 422, 621, 675, 912, 939, 999
Sau3AI GATC 5 cut(s) 181, 334, 497, 720, 767
Sau96I GGNCC 3 cut(s) 56, 923, 1012
SchI GAGTC 2 cut(s) 530, 1064
SfaNI GCATC 3 cut(s) 135, 979, 1010
SfcI CTRYAG 2 cut(s) 438, 555
SinI GGWCC 2 cut(s) 56, 923
SmiMI CAYNNNNRTG 2 cut(s) 530, 641
Sse9I AATT 5 cut(s) 162, 271, 776, 814, 1050
SspMI CTAG 2 cut(s) 365, 617
TaaI ACNGT 3 cut(s) 564, 688, 706
TaiI ACGT 2 cut(s) 136, 397
TaqI TCGA 1 cut(s) 51
TasI AATT 5 cut(s) 162, 271, 776, 814, 1050
Tru1I TTAA 4 cut(s) 291, 716, 731, 1079
Tru9I TTAA 4 cut(s) 291, 716, 731, 1079
TscAI CASTG 5 cut(s) 67, 313, 462, 691, 709
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 6 cut(s) 421, 620, 674, 911, 938, 998
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 1063
TspRI CASTG 5 cut(s) 67, 313, 462, 691, 709
VpaK11BI GGWCC 2 cut(s) 56, 923
XceI RCATGY 2 cut(s) 603, 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmiI GTMKAC 2 cut(s) 437, 955
XmnI GAANNNNTTC 2 cut(s) 266, 564
XspI CTAG 2 cut(s) 365, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.