Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015972

Physical Location & Seq

Genomic Coordinates Reverse (-)

23528520 .. 23529760

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGAACTACACAACCCTAGAAATTGTTCAAGAAAACCCAAACTCAGCCGTCTTCTACCTTTACCTGAATCGCCCAAGCCATCGAAACGCTCTATCGCGCGACTTCTTCACCGAATTCCCCAGAGCCCTCTCGTCCCTCGACCAAAACTCAGACGTCAACGTCATCGTTCTCAGCGGCGCCGGCAACCACTTCTGCGCCGGAATCGACCTCAAAACCCTAACATCGATCTCCGACCAGTTTGTCTCCGGAGACCGAGGCCGTGCCGGAGAGAAGTTCCGTAGAGAAATCAAGGAACTGCAGGAGGCGATCACTGCGATCGAGCGGTGCCGGAAGCCCGTGGTCGCATCAATCCACGGGGCGTGCATCGGTGGCGGTGTTGATATCGTGACCGCCTGTGACATAAGGTATTGCAGCAAGGACGCGTTCTTTTCGGTGAAAGAGGTGGACTTGGCGATCACGGCGGACCTCGGGACGCTTCAGAGGCTACCCAGCATCGTCGGGTATGGTAACGCGCTTGAATTAGCGCTTACGGGTCGGACCTTTTCGAGTTCGGAGGCTAAGGAGCTGGGCCTGGTCTCTAGAGTGTTCGGCTCCAGGGAGGAGTTGGATAACGGCGTACGTGTTGTCGCTGAGGGAATTGGGTTGAAATCTCCACTTGCGGTTAGAGGGACGAAAGCAGTGCTGCAGAGAAGTAGGGAGCTGAATGTGGAGCAAGGCTTGGATTATGTTGCCACGTGGAATTCGGCGATGTTGTTATCTGATGATTTAAGTGAGGCGGTCTCTGCCTACGCCCAAAAAAGAAAGCCTATTTTTGCCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0051750 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

ECH_1

Protein Analysis

276

Amino Acids

29.96

Weight (kDa)

6.35

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43280
fragaria_vesca	FvH4_4g23150
malus_domestica	MD13G1124500.v1.1
prunus_persica	Prupe.1G220600_v2.0.a1
pyrus_communis	pycom13g10880
rosa_chinensis	RchiOBHm_Chr4g0429491
rosa_laevigata	RLG00000007066
rosa_multiflora	Rmu_sc0003708.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371190
rosa_rugosa	Rorug04G0236400
rosa_samantha	Rh4AG292100 Rh4BG297900 Rh4CG313400 Rh4DG295000
rosa_wichuraiana	Rw4G025300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	161, 242
AatII	GACGTC	1 cut(s)	159
AccB1I	GGYRCC	2 cut(s)	179, 327
AccBSI	CCGCTC	1 cut(s)	325
AccII	CGCG	4 cut(s)	100, 102, 425, 515
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	7 cut(s)	177, 325, 375, 393, 464, 662, 779
AcsI	RAATTY	2 cut(s)	116, 742
AcuI	CTGAAG	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	738
AcyI	GRCGYC	2 cut(s)	156, 180
AfaI	GTAC	1 cut(s)	621
AfeI	AGCGCT	1 cut(s)	528
AflIII	ACRYGT	2 cut(s)	423, 622
AgsI	TTSAA	3 cut(s)	32, 521, 649
AjnI	CCWGG	2 cut(s)	573, 596
AluBI	AGCT	2 cut(s)	568, 703
AluI	AGCT	2 cut(s)	568, 703
Alw26I	GTCTC	4 cut(s)	246, 250, 583, 787
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	528
AoxI	GGCC	2 cut(s)	259, 571
ApeKI	GCWGC	2 cut(s)	414, 685
ApoI	RAATTY	2 cut(s)	116, 742
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	5 cut(s)	102, 182, 200, 517, 529
AspS9I	GGNCC	3 cut(s)	466, 540, 571
AsuHPI	GGTGA	2 cut(s)	103, 448
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	466, 540
BanI	GGYRCC	2 cut(s)	179, 327
BanII	GRGCYC	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	46
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	426, 672
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	4 cut(s)	35, 246, 477, 631
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciT130I	CCWGG	2 cut(s)	575, 598
BcoDI	GTCTC	4 cut(s)	246, 250, 583, 787
BfaI	CTAG	2 cut(s)	20, 582
BfmI	CTRYAG	2 cut(s)	299, 686
BfoI	RGCGCY	2 cut(s)	183, 530
BisI	GCNGC	3 cut(s)	178, 415, 686
BlsI	GCNGC	3 cut(s)	179, 416, 687
Bme1390I	CCNGG	2 cut(s)	575, 598
Bme18I	GGWCC	2 cut(s)	466, 540
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	3 cut(s)	466, 540, 571
BmiI	GGNNCC	3 cut(s)	181, 329, 595
BmrFI	CCNGG	2 cut(s)	575, 598
BmsI	GCATC	3 cut(s)	356, 375, 504
BpiI	GAAGAC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BpmI	CTGGAG	1 cut(s)	580
Bpu10I	CCTNAGC	2 cut(s)	561, 633
Bsa29I	ATCGAT	1 cut(s)	227
BsaAI	YACGTR	2 cut(s)	623, 738
BsaHI	GRCGYC	2 cut(s)	156, 180
BsaI	GGTCTC	3 cut(s)	246, 583, 787
BsaJI	CCNNGG	5 cut(s)	256, 339, 355, 469, 597
BsaWI	WCCGGW	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	575, 598
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	5 cut(s)	256, 339, 355, 469, 597
BseMII	CTCAG	4 cut(s)	60, 165, 187, 624
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	426, 672
BseYI	CCCAGC	2 cut(s)	491, 568
Bsh1236I	CGCG	4 cut(s)	100, 102, 425, 515
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	261, 573
BshNI	GGYRCC	2 cut(s)	179, 327
BshVI	ATCGAT	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	5 cut(s)	183, 201, 249, 267, 331
BsiWI	CGTACG	1 cut(s)	619
BslFI	GGGAC	3 cut(s)	121, 487, 685
BsmAI	GTCTC	4 cut(s)	246, 250, 583, 787
BsmFI	GGGAC	3 cut(s)	121, 487, 685
BsnI	GGCC	2 cut(s)	261, 573
Bso31I	GGTCTC	3 cut(s)	246, 583, 787
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	228, 309, 318, 456
BspACI	CCGC	7 cut(s)	177, 325, 375, 393, 464, 662, 779
BspANI	GGCC	2 cut(s)	261, 573
BspCNI	CTCAG	4 cut(s)	59, 164, 186, 625
BspDI	ATCGAT	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	4 cut(s)	100, 102, 425, 515
BspLI	GGNNCC	3 cut(s)	181, 329, 595
BspMAI	CTGCAG	2 cut(s)	303, 690
BspT107I	GGYRCC	2 cut(s)	179, 327
BspTNI	GGTCTC	3 cut(s)	246, 583, 787
BsrBI	CCGCTC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	5 cut(s)	256, 339, 355, 469, 597
BssMI	GATC	4 cut(s)	228, 309, 318, 456
BssNI	GRCGYC	2 cut(s)	156, 180
Bst2UI	CCWGG	2 cut(s)	575, 598
BstACI	GRCGYC	2 cut(s)	156, 180
BstBAI	YACGTR	2 cut(s)	623, 738
BstC8I	GCNNGC	2 cut(s)	184, 364
BstDEI	CTNAG	5 cut(s)	46, 151, 173, 561, 633
BstDSI	CCRYGG	2 cut(s)	339, 355
BstFNI	CGCG	4 cut(s)	100, 102, 425, 515
BstH2I	RGCGCY	2 cut(s)	183, 530
BstHHI	GCGC	5 cut(s)	102, 182, 200, 517, 529
BstKTI	GATC	4 cut(s)	231, 312, 321, 459
BstMAI	GTCTC	4 cut(s)	246, 250, 583, 787
BstMBI	GATC	4 cut(s)	228, 309, 318, 456
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 314, 372, 461, 484, 785
BstNI	CCWGG	2 cut(s)	575, 598
BstSCI	CCNGG	2 cut(s)	573, 596
BstSFI	CTRYAG	2 cut(s)	299, 686
BstUI	CGCG	4 cut(s)	100, 102, 425, 515
BstV1I	GCAGC	2 cut(s)	426, 672
BstV2I	GAAGAC	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	261, 573
BsuTUI	ATCGAT	1 cut(s)	227
BtgI	CCRYGG	2 cut(s)	339, 355
BtgZI	GCGATG	1 cut(s)	764
BtsI	GCAGTG	2 cut(s)	312, 687
BtsIMutI	CAGTG	2 cut(s)	312, 687
Cac8I	GCNNGC	2 cut(s)	184, 364
CfoI	GCGC	5 cut(s)	102, 182, 200, 517, 529
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	466, 540, 571
ClaI	ATCGAT	1 cut(s)	227
CseI	GACGC	2 cut(s)	431, 484
Csp6I	GTAC	1 cut(s)	620
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	5 cut(s)	46, 151, 173, 561, 633
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	230, 311, 320, 458
DpnII	GATC	4 cut(s)	228, 309, 318, 456
DrdI	GACNNNNNNGTC	2 cut(s)	161, 242
DseDI	GACNNNNNNGTC	2 cut(s)	161, 242
EciI	GGCGGA	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	3 cut(s)	246, 583, 787
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	466, 540
Eco47III	AGCGCT	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	464
Eco72I	CACGTG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	470
EcoRI	GAATTC	2 cut(s)	116, 742
EcoRII	CCWGG	2 cut(s)	573, 596
EcoRV	GATATC	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaiI	YATR	3 cut(s)	404, 507, 729
FaqI	GGGAC	3 cut(s)	121, 487, 685
Fnu4HI	GCNGC	3 cut(s)	178, 415, 686
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	178, 415, 686
FspBI	CTAG	2 cut(s)	20, 582
GlaI	GCGC	5 cut(s)	101, 181, 199, 516, 528
GluI	GCNGC	3 cut(s)	178, 415, 686
GsaI	CCCAGC	2 cut(s)	495, 572
GsuI	CTGGAG	1 cut(s)	580
HaeII	RGCGCY	2 cut(s)	183, 530
HaeIII	GGCC	2 cut(s)	261, 573
HapII	CCGG	5 cut(s)	183, 201, 249, 267, 331
HgaI	GACGC	2 cut(s)	431, 484
HhaI	GCGC	5 cut(s)	102, 182, 200, 517, 529
Hin1I	GRCGYC	2 cut(s)	156, 180
Hin6I	GCGC	5 cut(s)	100, 180, 198, 515, 527
HinP1I	GCGC	5 cut(s)	100, 180, 198, 515, 527
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	70, 204
HpaII	CCGG	5 cut(s)	183, 201, 249, 267, 331
HphI	GGTGA	2 cut(s)	103, 448
Hpy166II	GTNNAC	2 cut(s)	160, 448
Hpy188I	TCNGA	7 cut(s)	154, 235, 483, 540, 556, 763, 827
Hpy188III	TCNNGA	5 cut(s)	32, 249, 388, 472, 582
Hpy8I	GTNNAC	2 cut(s)	160, 448
Hpy99I	CGWCG	1 cut(s)	503
HpyCH4IV	ACGT	4 cut(s)	156, 162, 622, 737
HpyCH4V	TGCA	4 cut(s)	301, 366, 414, 688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 314, 372, 461, 484, 785
HpyF3I	CTNAG	5 cut(s)	46, 151, 173, 561, 633
HpySE526I	ACGT	4 cut(s)	156, 162, 622, 737
Hsp92I	GRCGYC	2 cut(s)	156, 180
HspAI	GCGC	5 cut(s)	100, 180, 198, 515, 527
KasI	GGCGCC	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	228, 309, 318, 456
LmnI	GCTCC	4 cut(s)	565, 599, 700, 712
Lsp1109I	GCAGC	2 cut(s)	426, 672
LweI	GCATC	3 cut(s)	356, 375, 504
MaeI	CTAG	2 cut(s)	20, 582
MaeII	ACGT	4 cut(s)	156, 162, 622, 737
MaeIII	GTNAC	3 cut(s)	388, 398, 509
MalI	GATC	4 cut(s)	230, 311, 320, 458
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	4 cut(s)	228, 309, 318, 456
MboII	GAAGA	2 cut(s)	46, 100
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	5 cut(s)	24, 116, 521, 639, 742
MluI	ACGCGT	1 cut(s)	423
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	3 cut(s)	258, 518, 588
MroI	TCCGGA	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	5 cut(s)	183, 201, 249, 267, 331
MspR9I	CCNGG	2 cut(s)	575, 598
MvaI	CCWGG	2 cut(s)	575, 598
MvnI	CGCG	4 cut(s)	100, 102, 425, 515
MwoI	GCNNNNNNNGC	6 cut(s)	183, 314, 372, 461, 484, 785
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	180
NdeII	GATC	4 cut(s)	228, 309, 318, 456
NgoMIV	GCCGGC	1 cut(s)	182
NlaIV	GGNNCC	3 cut(s)	181, 329, 595
NmuCI	GTSAC	2 cut(s)	388, 398
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	70, 204
Pfl23II	CGTACG	1 cut(s)	619
PkrI	GCNGC	3 cut(s)	179, 416, 687
Ple19I	CGATCG	1 cut(s)	321
PluTI	GGCGCC	1 cut(s)	183
PmaCI	CACGTG	1 cut(s)	738
PmlI	CACGTG	1 cut(s)	738
Ppu21I	YACGTR	2 cut(s)	623, 738
Psp6I	CCWGG	2 cut(s)	573, 596
PspCI	CACGTG	1 cut(s)	738
PspFI	CCCAGC	2 cut(s)	491, 568
PspGI	CCWGG	2 cut(s)	573, 596
PspLI	CGTACG	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	181, 329, 595
PspPI	GGNCC	3 cut(s)	466, 540, 571
PstI	CTGCAG	2 cut(s)	303, 690
PvuI	CGATCG	1 cut(s)	321
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
SaqAI	TTAA	1 cut(s)	770
SatI	GCNGC	3 cut(s)	178, 415, 686
Sau3AI	GATC	4 cut(s)	228, 309, 318, 456
Sau96I	GGNCC	3 cut(s)	466, 540, 571
ScrFI	CCNGG	2 cut(s)	575, 598
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	356, 375, 504
SfcI	CTRYAG	2 cut(s)	299, 686
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	466, 540
Sse9I	AATT	5 cut(s)	24, 116, 521, 639, 742
SsiI	CCGC	7 cut(s)	177, 325, 375, 393, 464, 662, 779
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	20, 582
StyD4I	CCNGG	2 cut(s)	573, 596
TaiI	ACGT	4 cut(s)	159, 165, 625, 740
TaqI	TCGA	6 cut(s)	85, 141, 207, 227, 321, 548
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	5 cut(s)	24, 116, 521, 639, 742
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	70, 204
Tru1I	TTAA	1 cut(s)	770
Tru9I	TTAA	1 cut(s)	770
TscAI	CASTG	2 cut(s)	319, 687
TseFI	GTSAC	2 cut(s)	388, 398
TseI	GCWGC	2 cut(s)	414, 685
Tsp45I	GTSAC	2 cut(s)	388, 398
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	319, 687
VpaK11BI	GGWCC	2 cut(s)	466, 540
XapI	RAATTY	2 cut(s)	116, 742
XbaI	TCTAGA	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	20, 582
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.