Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

40274830 .. 40281371

Gene Structure 6542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCTCATATCTCTGAGACCCAAATCCCTCACCAGCCTTCCACACCTTTCTGCCGCTTCACCTCTCAAATGGGTCTCCACAGCCACCACCCAAAACCCAGAGGACCATCTGCGTCTCTTCTTCAAATCCAGAACGAACCAAACCCACATCGACTACGAGCGCCAATTGGTCTCTGTTCTAAAATCTTGCGCAACCCTTTCGGCCCTCTTCCAAGGCCAGCAACTCCATTCCCTTGTTCTCAAGTCCGGTCTCGACTCCAACACTTTCATCAACAACAGTTTGATTAGCATGTACGCCAAATGCGGCTCCATTTCCGGCGCCGAATCGTTGTTCGGCTCTTGCTCTGAGCCGGACCCGGTTTCCTGTAACATTATGGTTGCTGGGTATGTGAAATCTGGTGACTTGGACAATGCCCGCCACGTGTTTGATAAAATGCCTGAGAGAGGTTGTGTCTCGTATACTACTATGATAATGGGTCTTTCTAGAAATGGGTTTTGGAGGGAGGCTGTTGAGGTTTTTAGGGATATGAGGAATGCCGGTGTGATGCCGAATGAGCTGACAATGGGGACTGTGATCTCGACGTTTTCGCATTTGGGTGGGATTTGGAATTGTCGAATGCTTCATGGTTTGGTGGTTAAGTTGCAGCTTGATGGAATGGTGCTTGTTTCGACGAATTTGGTGAAGGTGTATTGTGCTTGTAAGAGTGTGTGGGAAGCGAGAAGTTTGTTTGATGAGATGCCCGAAAGGAATATAGTTTCGTGGAATGTCATGTTGAATGGGTACTCTAAGGCTGGACTTGTGCATTTGGCAAGAGACTTGTTTGAGAGGATTGATATGAAAGATGTGGTTTCGTGGGGTACGATGATTGATGGGTATGTGCAAGTGGAGTGCTTGAGTGAAGCTTTGATGATGTATCGTGCAATGCTGCGTGCCGGGTTGGGACCGAATGATGTTATGCTTGTTGACTTAATTTCAGTGTGTGGGAGGTTGGAGGCGATTCATGAAGGTCGGCAGTTTCATGGGAGAATTGTCAAGGAGGGTTTTGACTGTTATGATTTCATACAGGCAACGATCATAAATTTTTATGCAGGTTGTGGGGAAATGATTGCTGCTCATCTTCAGTTTGAAAAGGGCATCAAGGAGCATGTAGCATCTTGGAATGCTCTCATTGCAGGGTACATAAGAAATCAAATGATTGACCAAGCAAGTCTATTGTTTGATGAGATGCCTGAAAGGGATGTTTTTTCATGGAGTTCCATGATTTCTGGTTACACACAGACTGAGCAATCTAAATTGGCTCTGGAACTTTTCCAAAGAATGGTATCTAGTGGGATACAACCAAATGAAATAACAATGGTAAGCGTTTTGTCTGCAATCGCTGATTTAGGCACATTGAAAGAAGGAATATGGGCTCATGAATACATATGTGAAAATTCTATTCCTCTGAATGACAATTTGAGCGCAGCTATCATTGATATGTATGCCAAATGTGGGAGTATCAATACTGCCTTAAAGGTGTTCTATCAAATCCAAGACACAACCTCTTCTGTCTCACCATGGAATGCCATTATATGTGGGTTGGCGCTGCACGGACATGCAGCAATGTCTCTTGAAATATTTTCAGACTTGCAAAGGCGTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCCGGGGAGAGGTATTTTAAGAGCATGAAGAATGTATACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTTCTGGGTAGAGCTTGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACATTATTGGCCGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACAGTTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGCGAGTAATGCAGAGTCTAAGACTAACAAGATCACCAGGGCACAGTGATGTTGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0051750 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

ECH_1

Protein Analysis

696

Amino Acids

77.38

Weight (kDa)

6.1

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	117 - 150	1.9e-06	PPR repeat family
PPR	PF01535	120 - 150	6.2e-07	PPR repeat
PPR_1	PF12854	150 - 177	6.4e-06	PPR repeat
PPR	PF01535	151 - 181	6.9e-09	PPR repeat
PPR_2	PF13041	151 - 196	3.5e-10	PPR repeat family
PPR	PF01535	252 - 279	8.8e-06	PPR repeat
PPR_2	PF13041	280 - 318	1e-05	PPR repeat family
PPR_2	PF13041	412 - 459	1.4e-09	PPR repeat family
PPR	PF01535	415 - 445	1.6e-06	PPR repeat
PPR_2	PF13041	519 - 564	5.2e-06	PPR repeat family
E_motif	PF20431	633 - 693	5.7e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	2 cut(s)	1318, 1958
AccI	GTMKAC	2 cut(s)	458, 1743
AciI	CCGC	4 cut(s)	54, 303, 415, 1884
AclWI	GGATC	3 cut(s)	1794, 1943, 1956
AcoI	YGGCCR	1 cut(s)	1881
AcsI	RAATTY	4 cut(s)	673, 1078, 1432, 1933
AcuI	CTGAAG	1 cut(s)	1103
AcvI	CACGTG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	6 cut(s)	293, 782, 859, 1178, 1891, 1969
AfiI	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	8 cut(s)	124, 775, 1127, 1396, 1613, 1656, 1754, 1939
AjnI	CCWGG	1 cut(s)	2065
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AluBI	AGCT	5 cut(s)	556, 646, 902, 1466, 1802
AluI	AGCT	5 cut(s)	556, 646, 902, 1466, 1802
Alw26I	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 807, 1555, 1611
AlwI	GGATC	3 cut(s)	1794, 1943, 1956
AoxI	GGCC	4 cut(s)	201, 214, 1707, 1881
ApeKI	GCWGC	6 cut(s)	643, 925, 1109, 1463, 1585, 1598
ApoI	RAATTY	4 cut(s)	673, 1078, 1432, 1933
AspLEI	GCGC	5 cut(s)	162, 191, 320, 1463, 1585
AspS9I	GGNCC	4 cut(s)	103, 202, 352, 941
AsuC2I	CCSGG	3 cut(s)	356, 934, 1711
AsuHPI	GGTGA	6 cut(s)	22, 51, 410, 691, 1545, 2055
AvaII	GGWCC	3 cut(s)	103, 352, 941
BaeGI	GKGCMC	2 cut(s)	1874, 2073
BamHI	GGATCC	1 cut(s)	1948
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	1414
BarI	GAAGNNNNNNTAC	2 cut(s)	1727, 1759
BbrPI	CACGTG	1 cut(s)	421
BbvI	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
BccI	CCATC	4 cut(s)	114, 644, 863, 1960
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	2067
BciVI	GTATCC	1 cut(s)	1326
BcnI	CCSGG	3 cut(s)	356, 934, 1711
BcoDI	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 807, 1555, 1611
BfaI	CTAG	3 cut(s)	483, 1326, 1907
BfoI	RGCGCY	3 cut(s)	163, 321, 1586
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	1326
BisI	GCNGC	9 cut(s)	54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
BlsI	GCNGC	9 cut(s)	55, 305, 645, 927, 1111, 1465, 1587, 1600, 1885
Bme1390I	CCNGG	4 cut(s)	356, 934, 1711, 2067
Bme18I	GGWCC	3 cut(s)	103, 352, 941
BmgT120I	GGNCC	4 cut(s)	103, 202, 352, 941
BmiI	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
BmrFI	CCNGG	4 cut(s)	356, 934, 1711, 2067
BmsI	GCATC	7 cut(s)	534, 726, 1143, 1160, 1215, 1807, 1987
BplI	GAGNNNNNCTC	2 cut(s)	2003, 2035
BpuEI	CTTGAG	2 cut(s)	224, 913
BpuMI	CCSGG	3 cut(s)	356, 934, 1711
BsaAI	YACGTR	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	4 cut(s)	10, 79, 175, 254
BsaJI	CCNNGG	4 cut(s)	211, 1556, 1710, 2066
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
Bse118I	RCCGGY	1 cut(s)	536
Bse3DI	GCAATG	3 cut(s)	927, 1167, 1608
BseBI	CCWGG	1 cut(s)	2067
BseDI	CCNNGG	4 cut(s)	211, 1556, 1710, 2066
BseGI	GGATG	1 cut(s)	1243
BseLI	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
BseMI	GCAATG	3 cut(s)	927, 1167, 1608
BseMII	CTCAG	5 cut(s)	5, 336, 429, 1272, 1812
BseSI	GKGCMC	2 cut(s)	1874, 2073
BseXI	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	1571
BshFI	GGCC	4 cut(s)	203, 216, 1709, 1883
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	7 cut(s)	246, 315, 350, 356, 537, 933, 1710
BslFI	GGGAC	2 cut(s)	580, 954
BslI	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
BsmAI	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 807, 1555, 1611
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	580, 954
BsmI	GAATGC	4 cut(s)	538, 621, 1165, 1567
BsnI	GGCC	4 cut(s)	203, 216, 1709, 1883
Bso31I	GGTCTC	4 cut(s)	10, 79, 175, 254
Bsp1286I	GDGCHC	3 cut(s)	1414, 1874, 2073
Bsp1407I	TGTACA	1 cut(s)	1889
Bsp143I	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
Bsp19I	CCATGG	1 cut(s)	1556
BspACI	CCGC	4 cut(s)	54, 303, 415, 1884
BspANI	GGCC	4 cut(s)	203, 216, 1709, 1883
BspCNI	CTCAG	5 cut(s)	6, 337, 430, 1273, 1813
BspHI	TCATGA	2 cut(s)	1000, 1414
BspLI	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	3 cut(s)	1794, 1943, 1956
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	4 cut(s)	10, 79, 175, 254
BsrDI	GCAATG	3 cut(s)	927, 1167, 1608
BsrFI	RCCGGY	1 cut(s)	536
BsrGI	TGTACA	1 cut(s)	1889
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	4 cut(s)	211, 1556, 1710, 2066
BssMI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
BssNAI	GTATAC	2 cut(s)	459, 1744
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	211, 1556
Bst1107I	GTATAC	2 cut(s)	459, 1744
Bst2UI	CCWGG	1 cut(s)	2067
Bst4CI	ACNGT	6 cut(s)	278, 571, 1049, 1944, 1972, 2075
Bst6I	CTCTTC	3 cut(s)	122, 212, 1549
BstACI	GRCGYC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	1889
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	5 cut(s)	218, 415, 930, 1804, 1841
BstDEI	CTNAG	8 cut(s)	14, 345, 438, 786, 1281, 1676, 1821, 2048
BstDSI	CCRYGG	1 cut(s)	1556
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	1243
BstH2I	RGCGCY	3 cut(s)	163, 321, 1586
BstHHI	GCGC	5 cut(s)	162, 191, 320, 1463, 1585
BstKTI	GATC	5 cut(s)	576, 1074, 1789, 1951, 2063
BstMAI	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 807, 1555, 1611
BstMBI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 1169, 2038
BstNI	CCWGG	1 cut(s)	2067
BstNSI	RCATGY	5 cut(s)	292, 1148, 1598, 1843, 1890
BstSCI	CCNGG	4 cut(s)	354, 932, 1709, 2065
BstSLI	GKGCMC	2 cut(s)	1874, 2073
BstV1I	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
BstX2I	RGATCY	2 cut(s)	1786, 1948
BstYI	RGATCY	2 cut(s)	1786, 1948
BstZ17I	GTATAC	2 cut(s)	459, 1744
BsuI	GTATCC	1 cut(s)	1326
BsuRI	GGCC	4 cut(s)	203, 216, 1709, 1883
BtgI	CCRYGG	1 cut(s)	1556
BtsCI	GGATG	1 cut(s)	1243
BtsIMutI	CAGTG	2 cut(s)	981, 2080
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	5 cut(s)	218, 415, 930, 1804, 1841
CciI	TCATGA	2 cut(s)	1000, 1414
CfoI	GCGC	5 cut(s)	162, 191, 320, 1463, 1585
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	4 cut(s)	103, 202, 352, 941
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	6 cut(s)	292, 781, 858, 1177, 1890, 1968
CviQI	GTAC	6 cut(s)	292, 781, 858, 1177, 1890, 1968
DdeI	CTNAG	8 cut(s)	14, 345, 438, 786, 1281, 1676, 1821, 2048
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	5 cut(s)	575, 1073, 1788, 1950, 2062
DpnII	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
EaeI	YGGCCR	1 cut(s)	1881
Eam1104I	CTCTTC	3 cut(s)	122, 212, 1549
EarI	CTCTTC	3 cut(s)	122, 212, 1549
Eco130I	CCWWGG	2 cut(s)	211, 1556
Eco24I	GRGCYC	1 cut(s)	1414
Eco31I	GGTCTC	4 cut(s)	10, 79, 175, 254
Eco32I	GATATC	1 cut(s)	1642
Eco47I	GGWCC	3 cut(s)	103, 352, 941
Eco57I	CTGAAG	1 cut(s)	1103
Eco72I	CACGTG	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	2065
EcoRV	GATATC	1 cut(s)	1642
EcoT14I	CCWWGG	2 cut(s)	211, 1556
EcoT38I	GRGCYC	1 cut(s)	1414
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	2 cut(s)	211, 1556
Esp3I	CGTCTC	1 cut(s)	119
FaqI	GGGAC	2 cut(s)	580, 954
FauI	CCCGC	1 cut(s)	422
FauNDI	CATATG	1 cut(s)	1424
FblI	GTMKAC	2 cut(s)	458, 1743
Fnu4HI	GCNGC	9 cut(s)	54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
FokI	GGATG	1 cut(s)	1250
FriOI	GRGCYC	1 cut(s)	1414
Fsp4HI	GCNGC	9 cut(s)	54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
FspBI	CTAG	3 cut(s)	483, 1326, 1907
FspI	TGCGCA	1 cut(s)	190
GlaI	GCGC	5 cut(s)	161, 190, 319, 1462, 1584
GluI	GCNGC	9 cut(s)	54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
GsaI	CCCAGC	1 cut(s)	384
HaeII	RGCGCY	3 cut(s)	163, 321, 1586
HaeIII	GGCC	4 cut(s)	203, 216, 1709, 1883
HapII	CCGG	7 cut(s)	246, 315, 350, 356, 537, 933, 1710
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	5 cut(s)	162, 191, 320, 1463, 1585
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	5 cut(s)	160, 189, 318, 1461, 1583
HinP1I	GCGC	5 cut(s)	160, 189, 318, 1461, 1583
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	6 cut(s)	254, 323, 997, 1671, 1903, 2044
HpaII	CCGG	7 cut(s)	246, 315, 350, 356, 537, 933, 1710
HphI	GGTGA	6 cut(s)	22, 51, 410, 691, 1545, 2055
Hpy166II	GTNNAC	3 cut(s)	459, 964, 1744
Hpy188I	TCNGA	5 cut(s)	15, 346, 1446, 1624, 1670
Hpy188III	TCNNGA	9 cut(s)	129, 251, 483, 577, 1001, 1301, 1415, 1610, 1907
Hpy8I	GTNNAC	3 cut(s)	459, 964, 1744
Hpy99I	CGWCG	2 cut(s)	583, 673
HpyAV	CCTTC	5 cut(s)	47, 676, 998, 1394, 1843
HpyCH4III	ACNGT	6 cut(s)	278, 571, 1049, 1944, 1972, 2075
HpyCH4IV	ACGT	2 cut(s)	420, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 1169, 2038
HpyF3I	CTNAG	8 cut(s)	14, 345, 438, 786, 1281, 1676, 1821, 2048
HpySE526I	ACGT	2 cut(s)	420, 581
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	5 cut(s)	160, 189, 318, 1461, 1583
KasI	GGCGCC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
LmnI	GCTCC	2 cut(s)	311, 1141
Lsp1109I	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
LweI	GCATC	7 cut(s)	534, 726, 1143, 1160, 1215, 1807, 1987
MaeI	CTAG	3 cut(s)	483, 1326, 1907
MaeII	ACGT	2 cut(s)	420, 581
MaeIII	GTNAC	3 cut(s)	365, 398, 1268
MalI	GATC	5 cut(s)	575, 1073, 1788, 1950, 2062
MboI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
MboII	GAAGA	8 cut(s)	109, 112, 199, 1109, 1536, 1747, 1781, 1826
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	2 cut(s)	1786, 1948
MhlI	GDGCHC	3 cut(s)	1414, 1874, 2073
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	3 cut(s)	248, 1680, 2053
MmeI	TCCRAC	4 cut(s)	282, 969, 1926, 2007
MseI	TTAA	5 cut(s)	636, 968, 1511, 1725, 1764
MslI	CAYNNNNRTG	5 cut(s)	594, 1475, 1593, 1844, 2076
MspI	CCGG	7 cut(s)	246, 315, 350, 356, 537, 933, 1710
MspR9I	CCNGG	4 cut(s)	356, 934, 1711, 2067
MunI	CAATTG	1 cut(s)	164
Mva1269I	GAATGC	4 cut(s)	538, 621, 1165, 1567
MvaI	CCWGG	1 cut(s)	2067
MwoI	GCNNNNNNNGC	3 cut(s)	553, 1169, 2038
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	3 cut(s)	356, 934, 1711
NcoI	CCATGG	1 cut(s)	1556
NdeI	CATATG	1 cut(s)	1424
NdeII	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
NlaIV	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
NmeAIII	GCCGAG	1 cut(s)	1832
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	190
NspI	RCATGY	5 cut(s)	292, 1148, 1598, 1843, 1890
PaeI	GCATGC	1 cut(s)	1843
PagI	TCATGA	2 cut(s)	1000, 1414
PcsI	WCGNNNNNNNCGW	1 cut(s)	857
PctI	GAATGC	4 cut(s)	538, 621, 1165, 1567
PfeI	GAWTC	3 cut(s)	323, 997, 1903
PflMI	CCANNNNNTGG	2 cut(s)	1318, 1958
PkrI	GCNGC	9 cut(s)	55, 305, 645, 927, 1111, 1465, 1587, 1600, 1885
PleI	GAGTC	3 cut(s)	248, 1679, 2052
PluTI	GGCGCC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	3 cut(s)	248, 1679, 2052
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	2065
PspCI	CACGTG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	2065
PspN4I	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
PspPI	GGNCC	4 cut(s)	103, 202, 352, 941
PsuI	RGATCY	2 cut(s)	1786, 1948
RsaI	GTAC	6 cut(s)	293, 782, 859, 1178, 1891, 1969
RsaNI	GTAC	6 cut(s)	292, 781, 858, 1177, 1890, 1968
RseI	CAYNNNNRTG	5 cut(s)	594, 1475, 1593, 1844, 2076
SaqAI	TTAA	5 cut(s)	636, 968, 1511, 1725, 1764
SatI	GCNGC	9 cut(s)	54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
Sau3AI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
Sau96I	GGNCC	4 cut(s)	103, 202, 352, 941
SchI	GAGTC	3 cut(s)	248, 1680, 2053
ScrFI	CCNGG	4 cut(s)	356, 934, 1711, 2067
SduI	GDGCHC	3 cut(s)	1414, 1874, 2073
SfaNI	GCATC	7 cut(s)	534, 726, 1143, 1160, 1215, 1807, 1987
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	3 cut(s)	103, 352, 941
SmiMI	CAYNNNNRTG	5 cut(s)	594, 1475, 1593, 1844, 2076
SmlI	CTYRAG	2 cut(s)	239, 892
SmoI	CTYRAG	2 cut(s)	239, 892
SphI	GCATGC	1 cut(s)	1843
SsiI	CCGC	4 cut(s)	54, 303, 415, 1884
SspDI	GGCGCC	1 cut(s)	317
SspI	AATATT	1 cut(s)	1617
SspMI	CTAG	3 cut(s)	483, 1326, 1907
StyD4I	CCNGG	4 cut(s)	354, 932, 1709, 2065
StyI	CCWWGG	2 cut(s)	211, 1556
TaaI	ACNGT	6 cut(s)	278, 571, 1049, 1944, 1972, 2075
TaiI	ACGT	2 cut(s)	423, 584
TaqI	TCGA	5 cut(s)	150, 252, 578, 613, 668
TaqII	GACCGA	1 cut(s)	958
TatI	WGTACW	2 cut(s)	1889, 1967
TauI	GCSGC	3 cut(s)	56, 306, 1886
TfiI	GAWTC	3 cut(s)	323, 997, 1903
Tru1I	TTAA	5 cut(s)	636, 968, 1511, 1725, 1764
Tru9I	TTAA	5 cut(s)	636, 968, 1511, 1725, 1764
TscAI	CASTG	2 cut(s)	981, 2080
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	6 cut(s)	643, 925, 1109, 1463, 1585, 1598
Tsp45I	GTSAC	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	1605
TspRI	CASTG	2 cut(s)	981, 2080
Van91I	CCANNNNNTGG	2 cut(s)	1318, 1958
VpaK11BI	GGWCC	3 cut(s)	103, 352, 941
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	4 cut(s)	673, 1078, 1432, 1933
XbaI	TCTAGA	2 cut(s)	482, 1906
XceI	RCATGY	5 cut(s)	292, 1148, 1598, 1843, 1890
XmiI	GTMKAC	2 cut(s)	458, 1743
XspI	CTAG	3 cut(s)	483, 1326, 1907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.