Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

17376619 .. 17379282

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTCTTGAAACTATGACATTGTCTTTATCTAGTTCTGCCATGTTATCATCAGGTGTTGTTGAAGATGATAAGAAGCAAGAGGCTATTGTTTTCCCTAAATTTGTTTTGATGGGTCATAGAGGATTTGGGATGAACATGCTTCAATCTCCGGACGAGAAAATGAAATTTATCAAAGAAAATTCTCTTCTTTCTTTTAATGTTGCTGCAGATTTTCCTATTGACTTCATTGAGTTTGATGTCCAGGTAACTAGAGATGGTTGCCCTGTAATTTTCCATGATATCTTCATGTTCACGCAAGAACAGGGAGTGATTATTGAGAAAAGAGTAACGGAAATGGATTTACATGAATTTCTCTCATATGGACCACAAAGGGATGGTACAAATGTGAAGCCTATGTGGAGGAAGACAAAAGATGGTAGAATTTTCGAGTGGAAAGTCGAAAAGGATGATCCTTTGTGTACCCTTGAAGATGCTTTCCTAAATGTTAAACACTCACTCGGATTCAATATCGAGCTCAAATTCGATGATAATACCGTATATGGAGAAGGAGAGTTACGTCAAACTCTTGACAACATCTTGACGGTTGTAAATGAACATTCCAAGAACCGGCCTATTATATTCTCGAGCTTTCATCCTGACGCGGCTCGACTCATCAGGAATATGCAAAGGTGTTATCCTGTATTCTTCTTAACAAATGGAGGATGTGAAATCTATAAGGATGTGAGAAGGAACTCATTAGACGAGGCCATCAAGCTTTGCAAAGAAAGCGGTTTGCAAGGGCTTGTCTCTGAGGTTAAGGCCATATTAAGAACCCCAAACGCAATCACACGAGTCAAAGATTCAAAACTTTCACTTCTATCTTATGGCCAGCTTAACAATGTGGTAGAGGTGATTTACTTGCAATATCTGATGGGTGTGGAGGGAGTGATTGTTGATATGGTCAAGGACATCTCCGAAGCCATTGCGAATATCGAAGTTACAAACGAGGATGATTGTGAAGGTGAGGATGAAAGAAAGTGTCTGATTAGGTTTGGAGAGGAGAGGAAAAAAGTGGAAATTACTAAGGATATGATCACTTTGTTAAATAAGTTCGTACCAAAACTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

370

Amino Acids

42.29

Weight (kDa)

5.12

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	40 - 290	7.7e-36	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	644
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	2 cut(s)	644, 771
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	6 cut(s)	101, 167, 181, 350, 423, 521
AfaI	GTAC	3 cut(s)	382, 463, 1098
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	6 cut(s)	11, 65, 146, 470, 508, 846
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	517, 630, 757, 874
AluI	AGCT	4 cut(s)	517, 630, 757, 874
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	793
AlwI	GGATC	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	4 cut(s)	611, 747, 801, 868
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	6 cut(s)	101, 167, 181, 350, 423, 521
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	904, 1016
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	365
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	6 cut(s)	106, 251, 371, 410, 758, 907
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	1074
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	2 cut(s)	33, 252
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	207, 645
BlsI	GCNGC	2 cut(s)	208, 646
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	963
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	8 cut(s)	138, 382, 454, 634, 710, 727, 997, 1015
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	1 cut(s)	783
BseRI	GAGGAG	1 cut(s)	1055
BseXI	GCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	4 cut(s)	613, 749, 803, 870
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	152, 610
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	793
BsnI	GGCC	4 cut(s)	613, 749, 803, 870
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	451, 1074
BspACI	CCGC	2 cut(s)	644, 771
BspANI	GGCC	4 cut(s)	613, 749, 803, 870
BspCNI	CTCAG	1 cut(s)	784
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	644
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	963
BsrFI	RCCGGY	1 cut(s)	609
BssAI	RCCGGY	1 cut(s)	609
BssMI	GATC	2 cut(s)	451, 1074
BssSI	CACGAG	1 cut(s)	831
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	538, 586
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	872
BstDEI	CTNAG	2 cut(s)	792, 1065
BstF5I	GGATG	8 cut(s)	138, 382, 454, 634, 710, 727, 997, 1015
BstFNI	CGCG	1 cut(s)	644
BstKTI	GATC	2 cut(s)	454, 1077
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	2 cut(s)	451, 1074
BstMWI	GCNNNNNNNGC	1 cut(s)	768
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	413
BsuRI	GGCC	4 cut(s)	613, 749, 803, 870
BtsCI	GGATG	8 cut(s)	138, 382, 454, 634, 710, 727, 997, 1015
Cac8I	GCNNGC	1 cut(s)	872
Cfr10I	RCCGGY	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	3 cut(s)	381, 462, 1097
CviAII	CATG	5 cut(s)	43, 139, 278, 289, 347
CviQI	GTAC	3 cut(s)	381, 462, 1097
DdeI	CTNAG	2 cut(s)	792, 1065
DpnI	GATC	2 cut(s)	453, 1076
DpnII	GATC	2 cut(s)	451, 1074
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	5 cut(s)	46, 142, 281, 292, 350
FatI	CATG	5 cut(s)	42, 138, 277, 288, 346
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	1074
Fnu4HI	GCNGC	2 cut(s)	207, 645
FokI	GGATG	8 cut(s)	145, 389, 461, 621, 717, 734, 1004, 1022
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	2 cut(s)	207, 645
FspBI	CTAG	2 cut(s)	33, 252
GluI	GCNGC	2 cut(s)	207, 645
HaeIII	GGCC	4 cut(s)	613, 749, 803, 870
HapII	CCGG	2 cut(s)	152, 610
HgaI	GACGC	1 cut(s)	650
Hin1II	CATG	5 cut(s)	46, 142, 281, 292, 350
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	4 cut(s)	504, 651, 834, 842
HpaII	CCGG	2 cut(s)	152, 610
HphI	GGTGA	2 cut(s)	904, 1016
Hpy166II	GTNNAC	2 cut(s)	294, 462
Hpy188I	TCNGA	5 cut(s)	503, 793, 912, 958, 1026
Hpy188III	TCNNGA	7 cut(s)	8, 152, 569, 580, 625, 638, 658
Hpy8I	GTNNAC	2 cut(s)	294, 462
HpyAV	CCTTC	3 cut(s)	542, 723, 995
HpyCH4III	ACNGT	2 cut(s)	538, 586
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	5 cut(s)	209, 667, 762, 778, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	768
HpyF3I	CTNAG	2 cut(s)	792, 1065
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	5 cut(s)	46, 142, 281, 292, 350
Kpn2I	TCCGGA	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	1074
Kzo9I	GATC	2 cut(s)	451, 1074
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	2 cut(s)	33, 252
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	4 cut(s)	247, 328, 555, 979
MalI	GATC	2 cut(s)	453, 1076
MboI	GATC	2 cut(s)	451, 1074
MboII	GAAGA	6 cut(s)	77, 179, 277, 418, 482, 679
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	8 cut(s)	101, 167, 181, 270, 350, 423, 521, 1059
MluNI	TGGCCA	1 cut(s)	870
MlyI	GAGTC	2 cut(s)	645, 843
Mox20I	TGGCCA	1 cut(s)	870
MroI	TCCGGA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	8 cut(s)	198, 489, 692, 798, 809, 876, 1085, 1111
Msp20I	TGGCCA	1 cut(s)	870
MspI	CCGG	2 cut(s)	152, 610
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	768
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	2 cut(s)	451, 1074
NlaIII	CATG	5 cut(s)	46, 142, 281, 292, 350
NspI	RCATGY	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	504, 842
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	208, 646
PleI	GAGTC	2 cut(s)	645, 842
PpsI	GAGTC	2 cut(s)	645, 842
Psp124BI	GAGCTC	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	382, 463, 1098
RsaNI	GTAC	3 cut(s)	381, 462, 1097
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	8 cut(s)	198, 489, 692, 798, 809, 876, 1085, 1111
SatI	GCNGC	2 cut(s)	207, 645
Sau3AI	GATC	2 cut(s)	451, 1074
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	645, 843
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	365
SlaI	CTCGAG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	8 cut(s)	101, 167, 181, 270, 350, 423, 521, 1059
SsiI	CCGC	2 cut(s)	644, 771
SspMI	CTAG	2 cut(s)	33, 252
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	538, 586
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	7 cut(s)	429, 441, 513, 525, 626, 649, 975
TasI	AATT	8 cut(s)	101, 167, 181, 270, 350, 423, 521, 1059
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	504, 842
Tru1I	TTAA	8 cut(s)	198, 489, 692, 798, 809, 876, 1085, 1111
Tru9I	TTAA	8 cut(s)	198, 489, 692, 798, 809, 876, 1085, 1111
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	8 cut(s)	149, 179, 217, 277, 363, 609, 623, 1026
TspGWI	ACGGA	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	6 cut(s)	101, 167, 181, 350, 423, 521
XceI	RCATGY	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	625
XspI	CTAG	2 cut(s)	33, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.