Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

21576338 .. 21582447

Gene Structure 6110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0235100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGAAGGTTAAGAAGAAGAGCTCTGTTGCGGCAGACTCGGTGAAAGAACAACAGAAGAAGCAAAAGGGGAAGGGGAAGATGAAGATGAAGATTCCTGAAGCGAAACAAGAAAAACAGCAACCGGAGGAAGTAGACTCTGATTCTGTTTACGATTCCGGAGCTGAAGATGAGAGGAGTCTGTCAAATCATGAGGATATGTCTGGTGGTGAAGGATCTGACTTAGAGGATTATCCATCAATCAGAGACACAGACTCGGAAGATGAAGAGAGTGGTTTTTCTGAAGATGAGGGTGAGCTCAACACCAGCAGAAATGATGGTTTGGCAATTGATCATGGTAATGAGGAGGAAAGTGATAGTTCTGGACTTCATGAAGTAGTCGAGGAAAGTGATTCATCTGAAGATGAGGTTGCTCCTCGAAATACAATCGGTGCTGTTCCCTTGGAGTGGTATCGGGATGAGAAACATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGAGAAGATAAATTACAATCCTTTCTCGCTAGCGCTGATGATTCCAAAAATTGGCGCAAATTTTTGGATGAATACAATGATGAGGAAGTAGAAGTGACAAAAGAAGATATGAAAACTATAAATAGATTGCTTGAAGGAAAGGCGCCACACGGTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTTAAATGGGATGACTCAAAGCATCCACTGTCAAATGCCCCTGAACCCAAGAGACGATTCATTCCTTCAAAATCTGAAAGTAAACTGGTGAAGAGGTTAGTATTAGCAATTCGGAAGGGTTTAATTAAGCCTAGAAAGGATGAAGAAGAAGAAGAAGAAGAAGAAAGTGTTTATCCCTTGTGGGGAGACGACTCTAATTCAACGGAAAAGGATGGTAGCCATTTATCTTACATTCCAGCGCCAAAGCCAAAATTGCCAGGGTATGAGGAGTCTTTCAATCCTCCTCCAGAATTCATCCCAACACAAGAAGAGATTGATGCTTATCAGTTAATGTATGAGGAAGACCGCCCTAAGTTTATACCGAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATTAAGGAGTGCTTCGAAAGATGTTTGGATCTATACTTGTGCCCCAGAGTTCGGAAGAAACGTATCAATATTGATCCTGAATCTCTGAAGCCCAAGCTACCAAGCCGAAAGGATCTCAAGCCTTATCCTGTGAAATGTTATCTAGAGTATAGAGGTCACAAAGACACAGTTACATCAGTTTCCACAGAAGTTTCAGGGCAGTGGATTGCATCAGGTTCATTGGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGTAGATGTCTCAAACTCTGGGAGATTGGAGAAGCTGTCACATATGTAGCTTGGAATCCCAATCCTGAGTATTCCGTATTGGCTGTCTCTGTGGGACAAGATGTACTTATTCTCAACACTGGTTTTGGGAATGAAGAAGTACAGAAAAAAACTAAAGAACTTCTTTCAGCTGAAACACCTACCACACCAGATGACACGGCTACCTTCGTGAGCTGGATTCAAGATGAAACACATGAGGGCACCAGGTTAAGACATTTTAAGACTGTGTCTTCAGTGGAATGGCATCGTAGAGGAGACTACTTTTCAACGGTGGTGCCAGCAGGCCAATCAAAATCAATTTTTATGCATAGGCTCTCTCAGAAGTCTACCCAGACATTTTCAATCAAGTTGGGTGGGCTTGCAGTTACTTCAGTTTTCCATCCTGTTCGCTCCCACATCTTCATTTCTACGAAGAAAACTATTCGCCAATATGATTTGGTGAAGGGAAAGCAAATCAGAAAGCTTGATACAGGACTAAAAGAAATCTCCTCCATTGCAGTTCATCCTTCTGGTGATCATGTAATTGTGGGGAGCAGAGAAGGAAAATTTTGTTGGTTTGATATGGACCTTTCAACCAAAAAACCTTACCTTATTCGCCAGTGGCATAAGAAGGACATCAACAATGTGTCTATCCATCGTTTATATCCGTTGTTTGCAACATGCTCTGATGATTGCACCGTACAAGTTTCTCATGGCATGGTTTATTCAGATCTTAACCAGAACCCTCTTATAGTTCCACTGGAAATACTCCGAGGTCATGCAAGCTCAGATGGGAGAGGTGTAATGGATTGCAAATTCCACCCAAGGCAGCCCTGGTTGTTCACGGCCGGTGCTGACTCGGTGATCAGACTTTACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko03013 ko04810 map03013 map04810

Pfam Domains

Protein Families

DUF1394 FragX_IP

Protein Analysis

752

Amino Acids

85.75

Weight (kDa)

5.49

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	150 - 410	8.5e-100	BOP1NT (NUC169) domain
WD40	PF00400	412 - 448	2.2e-09	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	413 - 492	8.9e-13	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	415 - 550	5.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	415 - 487	2.7e-07	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	415 - 498	3.4e-10	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	416 - 477	1.5e-06	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	417 - 494	2.1e-08	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	417 - 492	8.5e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	525 - 654	8.1e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	537 - 750	8e-13	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	560 - 699	7.7e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	599 - 750	2.3e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	600 - 694	3.4e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	604 - 750	1.2e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	625 - 750	1.4e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	649, 1595, 1669
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccI	GTMKAC	2 cut(s)	132, 1721
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	2 cut(s)	29, 1039
AclWI	GGATC	5 cut(s)	220, 662, 1137, 1169, 1221
AcoI	YGGCCR	1 cut(s)	2220
AcsI	RAATTY	4 cut(s)	566, 983, 1940, 2189
AcuI	CTGAAG	7 cut(s)	117, 183, 300, 417, 1208, 1611, 1749
AcyI	GRCGYC	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	3 cut(s)	1461, 1497, 2076
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	4 cut(s)	444, 558, 875, 1152
AgsI	TTSAA	9 cut(s)	641, 762, 894, 970, 1352, 1577, 1662, 1737, 1968
AjnI	CCWGG	3 cut(s)	949, 1598, 2207
AjuI	GAANNNNNNNTTGG	4 cut(s)	734, 766, 1930, 1962
Alw21I	GWGCWC	2 cut(s)	23, 297
Alw26I	GTCTC	6 cut(s)	237, 739, 873, 1370, 1447, 1644
AlwI	GGATC	5 cut(s)	220, 662, 1137, 1169, 1221
Aor13HI	TCCGGA	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	2 cut(s)	1678, 2220
ApeKI	GCWGC	1 cut(s)	2203
ApoI	RAATTY	4 cut(s)	566, 983, 1940, 2189
AspLEI	GCGC	5 cut(s)	542, 564, 652, 679, 934
AspS9I	GGNCC	1 cut(s)	1960
AsuHPI	GGTGA	8 cut(s)	52, 218, 302, 671, 793, 1846, 1919, 2248
AsuII	TTCGAA	1 cut(s)	1116
AsuNHI	GCTAGC	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	1960
BaeGI	GKGCMC	2 cut(s)	1145, 1598
BanI	GGYRCC	3 cut(s)	649, 1595, 1669
BanII	GRGCYC	2 cut(s)	23, 297
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BbsI	GAAGAC	2 cut(s)	1041, 1617
Bbv12I	GWGCWC	2 cut(s)	23, 297
BbvI	GCAGC	1 cut(s)	2215
BccI	CCATC	7 cut(s)	241, 308, 899, 1319, 1782, 2037, 2159
BceAI	ACGGC	2 cut(s)	1569, 2235
BciT130I	CCWGG	3 cut(s)	951, 1600, 2209
BclI	TGATCA	3 cut(s)	328, 1909, 2238
BcoDI	GTCTC	6 cut(s)	237, 739, 873, 1370, 1447, 1644
BfaI	CTAG	3 cut(s)	537, 825, 1244
BfoI	RGCGCY	3 cut(s)	543, 653, 935
BglII	AGATCT	1 cut(s)	2104
BisI	GCNGC	2 cut(s)	30, 2204
BlsI	GCNGC	2 cut(s)	31, 2205
Bme1390I	CCNGG	3 cut(s)	951, 1600, 2209
Bme18I	GGWCC	1 cut(s)	1960
BmgT120I	GGNCC	1 cut(s)	1960
BmiI	GGNNCC	3 cut(s)	651, 1597, 1671
BmrFI	CCNGG	3 cut(s)	951, 1600, 2209
BmsI	GCATC	5 cut(s)	724, 1000, 1089, 1319, 1648
BmtI	GCTAGC	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	1041, 1617
BpmI	CTGGAG	1 cut(s)	963
Bpu14I	TTCGAA	1 cut(s)	1116
BpuEI	CTTGAG	1 cut(s)	1202
BsaBI	GATNNNNATC	1 cut(s)	1014
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	5 cut(s)	438, 950, 2146, 2198, 2207
BsaWI	WCCGGW	2 cut(s)	121, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	1377, 1407
Bsc4I	CCNNNNNNNGG	4 cut(s)	444, 558, 875, 1152
Bse118I	RCCGGY	1 cut(s)	2222
Bse1I	ACTGG	5 cut(s)	783, 1360, 1480, 1993, 2139
Bse3DI	GCAATG	1 cut(s)	1887
Bse8I	GATNNNNATC	1 cut(s)	1014
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	3 cut(s)	951, 1600, 2209
BseDI	CCNNGG	5 cut(s)	438, 950, 2146, 2198, 2207
BseJI	GATNNNNATC	1 cut(s)	1014
BseLI	CCNNNNNNNGG	4 cut(s)	444, 558, 875, 1152
BseMI	GCAATG	1 cut(s)	1887
BseMII	CTCAG	3 cut(s)	1413, 1727, 2175
BseNI	ACTGG	5 cut(s)	783, 1360, 1480, 1993, 2139
BseRI	GAGGAG	7 cut(s)	187, 356, 402, 966, 974, 1662, 1873
BseSI	GKGCMC	2 cut(s)	1145, 1598
BseX3I	CGGCCG	1 cut(s)	2220
BseXI	GCAGC	1 cut(s)	2215
Bsh1285I	CGRYCG	1 cut(s)	2223
BshFI	GGCC	2 cut(s)	1680, 2222
BshNI	GGYRCC	3 cut(s)	649, 1595, 1669
BsiEI	CGRYCG	1 cut(s)	2223
BsiHKAI	GWGCWC	2 cut(s)	23, 297
BsiSI	CCGG	3 cut(s)	122, 156, 2223
BslFI	GGGAC	1 cut(s)	1464
BslI	CCNNNNNNNGG	4 cut(s)	444, 558, 875, 1152
BsmAI	GTCTC	6 cut(s)	237, 739, 873, 1370, 1447, 1644
BsmBI	CGTCTC	2 cut(s)	739, 873
BsmFI	GGGAC	1 cut(s)	1464
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	2 cut(s)	1680, 2222
Bsp119I	TTCGAA	1 cut(s)	1116
Bsp1286I	GDGCHC	4 cut(s)	23, 297, 1145, 1598
Bsp13I	TCCGGA	1 cut(s)	155
BspACI	CCGC	2 cut(s)	29, 1039
BspANI	GGCC	2 cut(s)	1680, 2222
BspCNI	CTCAG	3 cut(s)	1414, 1726, 2174
BspEI	TCCGGA	1 cut(s)	155
BspHI	TCATGA	2 cut(s)	187, 367
BspLI	GGNNCC	3 cut(s)	651, 1597, 1671
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	5 cut(s)	220, 662, 1137, 1169, 1221
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	1116
BspT107I	GGYRCC	3 cut(s)	649, 1595, 1669
BsrDI	GCAATG	1 cut(s)	1887
BsrFI	RCCGGY	1 cut(s)	2222
BsrI	ACTGG	5 cut(s)	783, 1360, 1480, 1993, 2139
BssAI	RCCGGY	1 cut(s)	2222
BssECI	CCNNGG	5 cut(s)	438, 950, 2146, 2198, 2207
BssNI	GRCGYC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	438, 2198
Bst2UI	CCWGG	3 cut(s)	951, 1600, 2209
Bst4CI	ACNGT	7 cut(s)	659, 723, 1270, 1333, 1621, 1666, 2074
Bst6I	CTCTTC	4 cut(s)	11, 258, 779, 996
BstACI	GRCGYC	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	1116
BstC8I	GCNNGC	5 cut(s)	538, 1674, 1678, 1755, 2158
BstDEI	CTNAG	5 cut(s)	220, 1044, 1422, 1713, 2161
BstH2I	RGCGCY	3 cut(s)	543, 653, 935
BstHHI	GCGC	5 cut(s)	542, 564, 652, 679, 934
BstMAI	GTCTC	6 cut(s)	237, 739, 873, 1370, 1447, 1644
BstMCI	CGRYCG	1 cut(s)	2223
BstMWI	GCNNNNNNNGC	1 cut(s)	946
BstNI	CCWGG	3 cut(s)	951, 1600, 2209
BstNSI	RCATGY	1 cut(s)	2058
BstSCI	CCNGG	3 cut(s)	949, 1598, 2207
BstSLI	GKGCMC	2 cut(s)	1145, 1598
BstV1I	GCAGC	1 cut(s)	2215
BstV2I	GAAGAC	2 cut(s)	1041, 1617
BstX2I	RGATCY	4 cut(s)	212, 1129, 1213, 2104
BstYI	RGATCY	4 cut(s)	212, 1129, 1213, 2104
BstZI	CGGCCG	1 cut(s)	2220
BsuRI	GGCC	2 cut(s)	1680, 2222
BtsI	GCAGTG	1 cut(s)	1307
BtsIMutI	CAGTG	6 cut(s)	719, 1307, 1473, 1635, 2000, 2132
Cac8I	GCNNGC	5 cut(s)	538, 1674, 1678, 1755, 2158
CciI	TCATGA	2 cut(s)	187, 367
CfoI	GCGC	5 cut(s)	542, 564, 652, 679, 934
Cfr10I	RCCGGY	1 cut(s)	2222
Cfr13I	GGNCC	1 cut(s)	1960
CsiI	ACCWGGT	1 cut(s)	1598
Csp6I	GTAC	3 cut(s)	1460, 1496, 2075
CspCI	CAANNNNNGTGG	2 cut(s)	1729, 1764
CviAII	CATG	9 cut(s)	188, 332, 368, 1589, 1913, 2055, 2087, 2092, 2153
CviQI	GTAC	3 cut(s)	1460, 1496, 2075
DdeI	CTNAG	5 cut(s)	220, 1044, 1422, 1713, 2161
DinI	GGCGCC	1 cut(s)	651
DraI	TTTAAA	1 cut(s)	697
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	2220
EagI	CGGCCG	1 cut(s)	2220
Eam1104I	CTCTTC	4 cut(s)	11, 258, 779, 996
EarI	CTCTTC	4 cut(s)	11, 258, 779, 996
Ecl136II	GAGCTC	2 cut(s)	21, 295
EclXI	CGGCCG	1 cut(s)	2220
Eco130I	CCWWGG	2 cut(s)	438, 2198
Eco24I	GRGCYC	2 cut(s)	23, 297
Eco47I	GGWCC	1 cut(s)	1960
Eco47III	AGCGCT	1 cut(s)	541
Eco52I	CGGCCG	1 cut(s)	2220
Eco53kI	GAGCTC	2 cut(s)	21, 295
Eco57I	CTGAAG	7 cut(s)	117, 183, 300, 417, 1208, 1611, 1749
EcoICRI	GAGCTC	2 cut(s)	21, 295
EcoRI	GAATTC	1 cut(s)	983
EcoRII	CCWGG	3 cut(s)	949, 1598, 2207
EcoT14I	CCWWGG	2 cut(s)	438, 2198
EcoT22I	ATGCAT	1 cut(s)	1704
EcoT38I	GRGCYC	2 cut(s)	23, 297
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	438, 2198
Esp3I	CGTCTC	2 cut(s)	739, 873
FaeI	CATG	9 cut(s)	191, 335, 371, 1592, 1916, 2058, 2090, 2095, 2156
FalI	AAGNNNNNCTT	6 cut(s)	1097, 1129, 1446, 1478, 1503, 1535
FaqI	GGGAC	1 cut(s)	1464
FatI	CATG	9 cut(s)	187, 331, 367, 1588, 1912, 2054, 2086, 2091, 2152
FauNDI	CATATG	3 cut(s)	673, 1090, 1399
FbaI	TGATCA	3 cut(s)	328, 1909, 2238
FblI	GTMKAC	2 cut(s)	132, 1721
Fnu4HI	GCNGC	2 cut(s)	30, 2204
FriOI	GRGCYC	2 cut(s)	23, 297
Fsp4HI	GCNGC	2 cut(s)	30, 2204
FspBI	CTAG	3 cut(s)	537, 825, 1244
GlaI	GCGC	5 cut(s)	541, 563, 651, 678, 933
GluI	GCNGC	2 cut(s)	30, 2204
GsuI	CTGGAG	1 cut(s)	963
HaeII	RGCGCY	3 cut(s)	543, 653, 935
HaeIII	GGCC	2 cut(s)	1680, 2222
HapII	CCGG	3 cut(s)	122, 156, 2223
HhaI	GCGC	5 cut(s)	542, 564, 652, 679, 934
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	9 cut(s)	191, 335, 371, 1592, 1916, 2058, 2090, 2095, 2156
Hin6I	GCGC	5 cut(s)	540, 562, 650, 677, 932
HinP1I	GCGC	5 cut(s)	540, 562, 650, 677, 932
HindIII	AAGCTT	1 cut(s)	1856
HpaII	CCGG	3 cut(s)	122, 156, 2223
HphI	GGTGA	8 cut(s)	52, 218, 302, 671, 793, 1846, 1919, 2248
Hpy166II	GTNNAC	6 cut(s)	133, 148, 776, 1065, 1722, 2217
Hpy8I	GTNNAC	6 cut(s)	133, 148, 776, 1065, 1722, 2217
HpyCH4III	ACNGT	7 cut(s)	659, 723, 1270, 1333, 1621, 1666, 2074
HpyCH4IV	ACGT	1 cut(s)	1162
HpyCH4V	TGCA	9 cut(s)	1088, 1310, 1702, 1757, 1892, 2051, 2070, 2156, 2187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	946
HpyF3I	CTNAG	5 cut(s)	220, 1044, 1422, 1713, 2161
HpySE526I	ACGT	1 cut(s)	1162
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	9 cut(s)	191, 335, 371, 1592, 1916, 2058, 2090, 2095, 2156
HspAI	GCGC	5 cut(s)	540, 562, 650, 677, 932
KasI	GGCGCC	1 cut(s)	649
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	3 cut(s)	328, 1909, 2238
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	4 cut(s)	158, 415, 1790, 1926
Lsp1109I	GCAGC	1 cut(s)	2215
LweI	GCATC	5 cut(s)	724, 1000, 1089, 1319, 1648
MabI	ACCWGGT	1 cut(s)	1598
MaeI	CTAG	3 cut(s)	537, 825, 1244
MaeII	ACGT	1 cut(s)	1162
MaeIII	GTNAC	6 cut(s)	601, 659, 1256, 1270, 1393, 1759
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	4 cut(s)	212, 1129, 1213, 2104
MhlI	GDGCHC	4 cut(s)	23, 297, 1145, 1598
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	8 cut(s)	29, 128, 184, 245, 701, 878, 971, 2225
Mph1103I	ATGCAT	1 cut(s)	1704
MroI	TCCGGA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	1526
MspI	CCGG	3 cut(s)	122, 156, 2223
MspR9I	CCNGG	3 cut(s)	951, 1600, 2209
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	1102
MvaI	CCWGG	3 cut(s)	951, 1600, 2209
MwoI	GCNNNNNNNGC	1 cut(s)	946
NarI	GGCGCC	1 cut(s)	650
NdeI	CATATG	3 cut(s)	673, 1090, 1399
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	9 cut(s)	191, 335, 371, 1592, 1916, 2058, 2090, 2095, 2156
NlaIV	GGNNCC	3 cut(s)	651, 1597, 1671
NmuCI	GTSAC	4 cut(s)	601, 659, 1256, 1393
NsiI	ATGCAT	1 cut(s)	1704
NspI	RCATGY	1 cut(s)	2058
NspV	TTCGAA	1 cut(s)	1116
PacI	TTAATTAA	1 cut(s)	819
PagI	TCATGA	2 cut(s)	187, 367
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	1159
PctI	GAATGC	1 cut(s)	1102
PfeI	GAWTC	9 cut(s)	91, 140, 152, 389, 548, 750, 1181, 1411, 1573
PflFI	GACNNNGTC	1 cut(s)	1621
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	2 cut(s)	31, 2205
PleI	GAGTC	8 cut(s)	29, 128, 183, 245, 701, 878, 970, 2225
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	8 cut(s)	29, 128, 183, 245, 701, 878, 970, 2225
Psp124BI	GAGCTC	2 cut(s)	23, 297
Psp6I	CCWGG	3 cut(s)	949, 1598, 2207
PspGI	CCWGG	3 cut(s)	949, 1598, 2207
PspN4I	GGNNCC	3 cut(s)	651, 1597, 1671
PspPI	GGNCC	1 cut(s)	1960
PsuI	RGATCY	4 cut(s)	212, 1129, 1213, 2104
PsyI	GACNNNGTC	1 cut(s)	1621
PvuII	CAGCTG	1 cut(s)	1526
RsaI	GTAC	3 cut(s)	1461, 1497, 2076
RsaNI	GTAC	3 cut(s)	1460, 1496, 2075
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	2 cut(s)	23, 297
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	2 cut(s)	30, 2204
Sau96I	GGNCC	1 cut(s)	1960
SchI	GAGTC	8 cut(s)	29, 128, 184, 245, 701, 878, 971, 2225
ScrFI	CCNGG	3 cut(s)	951, 1600, 2209
SduI	GDGCHC	4 cut(s)	23, 297, 1145, 1598
SexAI	ACCWGGT	1 cut(s)	1598
SfaNI	GCATC	5 cut(s)	724, 1000, 1089, 1319, 1648
SfoI	GGCGCC	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	1116
SinI	GGWCC	1 cut(s)	1960
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	1217
SmoI	CTYRAG	1 cut(s)	1217
SsiI	CCGC	2 cut(s)	29, 1039
SspDI	GGCGCC	1 cut(s)	649
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	3 cut(s)	537, 825, 1244
SstI	GAGCTC	2 cut(s)	23, 297
StyD4I	CCNGG	3 cut(s)	949, 1598, 2207
StyI	CCWWGG	2 cut(s)	438, 2198
TaaI	ACNGT	7 cut(s)	659, 723, 1270, 1333, 1621, 1666, 2074
TaiI	ACGT	1 cut(s)	1165
TaqI	TCGA	3 cut(s)	378, 415, 1116
TatI	WGTACW	2 cut(s)	1459, 1495
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	9 cut(s)	91, 140, 152, 389, 548, 750, 1181, 1411, 1573
TscAI	CASTG	6 cut(s)	726, 1307, 1480, 1635, 2000, 2139
TseFI	GTSAC	4 cut(s)	601, 659, 1256, 1393
TseI	GCWGC	1 cut(s)	2203
Tsp45I	GTSAC	4 cut(s)	601, 659, 1256, 1393
TspGWI	ACGGA	3 cut(s)	911, 1420, 2031
TspRI	CASTG	6 cut(s)	726, 1307, 1480, 1635, 2000, 2139
Tth111I	GACNNNGTC	1 cut(s)	1621
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	1960
XapI	RAATTY	4 cut(s)	566, 983, 1940, 2189
XbaI	TCTAGA	1 cut(s)	1243
XceI	RCATGY	1 cut(s)	2058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2205
XmiI	GTMKAC	2 cut(s)	132, 1721
XspI	CTAG	3 cut(s)	537, 825, 1244
Zsp2I	ATGCAT	1 cut(s)	1704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.