Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

23510626 .. 23514191

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G220500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCTCTCAGAGCCGTGCATGTCTTAAACGTTCCTAGTCTCCACCAAGTCACAGAAAATGCAGCATTGGCCCTCCATTCTTCACGCTTGGCTCAGGGTGTGAAAGATGAAGGTGAAGTAACCATATGTGGATACGAATGGCCCAAGTTCATGGTGATGGGACACAGAGGCAGCGGGATGAACATGCTACAATCTTATGATACAAGGCTCAAATGCATCAAAGAGAACTCTATTCTCTCTTTCAATTCTGCCTCTAAATTCCCTATCGATTTCGTCGAGTTTGACGTTCAGGTGACCAAAGATGACTATCCAGTCATTTTTCATGACAACTTTATTGGCGCTGAGGACAAGGGTGTTTTCAAGGAGCAAAGGGTTACAGACATAACTCTGCTGGAATTTCTTTCCTATGGACCTCAGAAGGAGGCAGGAAAGGTTGAGAGGCCTATGCTTAGGAAAATAAAAGATGGAAGAATTTTTGAGTGGAAGGTAGAAAAGGATGACTCCCTATGCACATTGCAAGAGGTGTTCGAGAAAGTTGAACGTTCCAAGGGTTTCAATATAGAATTGAAGTTTGATGATCAGATAGTCTACAAAGAGGAAAAACTCGAGCATGTTCTTCGAGTGATCTTGCAGGTGGTAAATAAGTTCGCCAAAGACAGACCAATTCTGTTTTCAAGCTTTCAACCTGATGCTGCACTTTTGATGAGAAAATTGCAGAGCACATACCCTGTATATTTCCTCACAAATGGAGGGTCTGAAATTTACGCGGATGTTCGAAGGAATTCGATGGAAGAGGCCATTAAGGTTTGCTTGCGGGGCGGTTTGCACGGAATTGTATCAGAAGTAAAAGCTATCTTCAGAAATCCAGGAGCAGTGACCAGGATCAAAGAGGCCAAACTTGGCATTATAACCTATGGACAATTAAACAATGTGGCAGAGGCTGTGTACATGCAAATTCTAATGGGCGTGGAGGGAGTGATTGTTGACCTTGTTCCAGAGATCGCAGAGGCAGTTTTCGTGGTAGCTCATTTCTTCTCAGAGCAGGAACTTGAACTTGCTTTCCTAGTAGAGGTTATGCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

362

Amino Acids

40.98

Weight (kDa)

5.55

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	908
AarI	CACCTGC	1 cut(s)	622
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	1 cut(s)	767
AciI	CCGC	4 cut(s)	174, 767, 814, 819
AclI	AACGTT	2 cut(s)	30, 541
AclWI	GGATC	1 cut(s)	890
AcsI	RAATTY	6 cut(s)	257, 395, 471, 759, 781, 954
AcuI	CTGAAG	1 cut(s)	841
AfaI	GTAC	1 cut(s)	947
AfiI	CCNNNNNNNGG	1 cut(s)	1069
AgsI	TTSAA	8 cut(s)	244, 361, 539, 556, 568, 675, 683, 1052
AjnI	CCWGG	2 cut(s)	865, 878
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AloI	GAACNNNNNNTCC	2 cut(s)	1044, 1076
AluBI	AGCT	3 cut(s)	678, 851, 1025
AluI	AGCT	3 cut(s)	678, 851, 1025
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	2 cut(s)	9, 44
AlwI	GGATC	1 cut(s)	890
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	5 cut(s)	69, 140, 440, 795, 891
ApeKI	GCWGC	3 cut(s)	62, 171, 692
ApoI	RAATTY	6 cut(s)	257, 395, 471, 759, 781, 954
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	70, 141, 410
AsuHPI	GGTGA	3 cut(s)	125, 166, 304
AsuII	TTCGAA	1 cut(s)	775
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	722
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	74, 183, 679
BccI	CCATC	3 cut(s)	151, 458, 781
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	2 cut(s)	867, 880
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	9, 44
BfaI	CTAG	2 cut(s)	36, 1064
BfoI	RGCGCY	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	63, 172, 693
BlsI	GCNGC	3 cut(s)	64, 173, 694
Bme1390I	CCNGG	2 cut(s)	867, 880
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	3 cut(s)	70, 141, 410
BmrFI	CCNGG	2 cut(s)	867, 880
BmsI	GCATC	2 cut(s)	225, 679
Bpu10I	CCTNAGC	3 cut(s)	93, 342, 449
Bpu14I	TTCGAA	1 cut(s)	775
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	1 cut(s)	1069
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	867, 880
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	3 cut(s)	183, 502, 775
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	1069
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	5 cut(s)	22, 107, 333, 428, 1050
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	74, 183, 679
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	5 cut(s)	71, 142, 442, 797, 893
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	722
BsiHKCI	CYCGRG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	1069
BsmAI	GTCTC	2 cut(s)	9, 44
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	5 cut(s)	71, 142, 442, 797, 893
BsoBI	CYCGRG	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp1407I	TGTACA	1 cut(s)	945
Bsp143I	GATC	4 cut(s)	577, 624, 882, 999
BspACI	CCGC	4 cut(s)	174, 767, 814, 819
BspANI	GGCC	5 cut(s)	71, 142, 442, 797, 893
BspCNI	CTCAG	5 cut(s)	21, 106, 334, 427, 1049
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	767
BspHI	TCATGA	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	890
BspT104I	TTCGAA	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	945
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	4 cut(s)	577, 624, 882, 999
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	867, 880
Bst6I	CTCTTC	1 cut(s)	786
BstAUI	TGTACA	1 cut(s)	945
BstBI	TTCGAA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	6 cut(s)	8, 93, 342, 414, 449, 1036
BstEII	GGTNACC	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	1067
BstF5I	GGATG	3 cut(s)	183, 502, 775
BstFNI	CGCG	1 cut(s)	767
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	4 cut(s)	580, 627, 885, 1002
BstMAI	GTCTC	2 cut(s)	9, 44
BstMBI	GATC	4 cut(s)	577, 624, 882, 999
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 816
BstNI	CCWGG	2 cut(s)	867, 880
BstNSI	RCATGY	4 cut(s)	23, 187, 614, 952
BstPI	GGTNACC	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	865, 878
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	3 cut(s)	74, 183, 679
BstXI	CCANNNNNNTGG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	5 cut(s)	71, 142, 442, 797, 893
BsuTUI	ATCGAT	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	183, 502, 775
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	1 cut(s)	879
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	812
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	70, 141, 410
ClaI	ATCGAT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	946
CviAII	CATG	6 cut(s)	20, 151, 184, 323, 611, 949
CviQI	GTAC	1 cut(s)	946
DdeI	CTNAG	6 cut(s)	8, 93, 342, 414, 449, 1036
DpnI	GATC	4 cut(s)	579, 626, 884, 1001
DpnII	GATC	4 cut(s)	577, 624, 882, 999
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	1067
EcoO65I	GGTNACC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	781
EcoRII	CCWGG	2 cut(s)	865, 878
EcoT14I	CCWWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	6 cut(s)	23, 154, 187, 326, 614, 952
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	6 cut(s)	19, 150, 183, 322, 610, 948
FauI	CCCGC	2 cut(s)	167, 807
FauNDI	CATATG	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	63, 172, 693
FokI	GGATG	3 cut(s)	190, 509, 782
Fsp4HI	GCNGC	3 cut(s)	63, 172, 693
FspBI	CTAG	2 cut(s)	36, 1064
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	3 cut(s)	63, 172, 693
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	5 cut(s)	71, 142, 442, 797, 893
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	6 cut(s)	23, 154, 187, 326, 614, 952
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	1 cut(s)	500
HphI	GGTGA	3 cut(s)	125, 166, 304
Hpy166II	GTNNAC	3 cut(s)	589, 946, 985
Hpy188I	TCNGA	7 cut(s)	11, 417, 582, 757, 841, 860, 1039
Hpy188III	TCNNGA	3 cut(s)	323, 529, 995
Hpy8I	GTNNAC	3 cut(s)	589, 946, 985
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	4 cut(s)	104, 412, 478, 771
HpyCH4IV	ACGT	3 cut(s)	30, 285, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 816
HpyF3I	CTNAG	6 cut(s)	8, 93, 342, 414, 449, 1036
HpySE526I	ACGT	3 cut(s)	30, 285, 541
Hsp92II	CATG	6 cut(s)	23, 154, 187, 326, 614, 952
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	577, 624, 882, 999
LmnI	GCTCC	2 cut(s)	364, 869
Lsp1109I	GCAGC	3 cut(s)	74, 183, 679
LweI	GCATC	2 cut(s)	225, 679
MaeI	CTAG	2 cut(s)	36, 1064
MaeII	ACGT	3 cut(s)	30, 285, 541
MaeIII	GTNAC	5 cut(s)	49, 118, 292, 373, 874
MalI	GATC	4 cut(s)	579, 626, 884, 1001
MboI	GATC	4 cut(s)	577, 624, 882, 999
MboII	GAAGA	6 cut(s)	72, 480, 608, 803, 847, 1024
MhlI	GDGCHC	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	3 cut(s)	26, 801, 923
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	867, 880
MvaI	CCWGG	2 cut(s)	867, 880
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	2 cut(s)	68, 816
NdeI	CATATG	1 cut(s)	125
NdeII	GATC	4 cut(s)	577, 624, 882, 999
NlaIII	CATG	6 cut(s)	23, 154, 187, 326, 614, 952
NmuCI	GTSAC	3 cut(s)	49, 292, 874
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	4 cut(s)	23, 187, 614, 952
NspV	TTCGAA	1 cut(s)	775
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 282
PdmI	GAANNNNTTC	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	3 cut(s)	64, 173, 694
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	908
Psp1406I	AACGTT	2 cut(s)	30, 541
Psp6I	CCWGG	2 cut(s)	865, 878
PspEI	GGTNACC	1 cut(s)	292
PspGI	CCWGG	2 cut(s)	865, 878
PspPI	GGNCC	3 cut(s)	70, 141, 410
PspXI	VCTCGAGB	1 cut(s)	605
PstNI	CAGNNNCTG	1 cut(s)	941
RsaI	GTAC	1 cut(s)	947
RsaNI	GTAC	1 cut(s)	946
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	26, 801, 923
SatI	GCNGC	3 cut(s)	63, 172, 693
Sau3AI	GATC	4 cut(s)	577, 624, 882, 999
Sau96I	GGNCC	3 cut(s)	70, 141, 410
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	867, 880
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	2 cut(s)	225, 679
Sfr274I	CTCGAG	1 cut(s)	605
SfuI	TTCGAA	1 cut(s)	775
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	174, 767, 814, 819
SspMI	CTAG	2 cut(s)	36, 1064
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	865, 878
StyI	CCWWGG	1 cut(s)	546
TaiI	ACGT	3 cut(s)	33, 288, 544
TaqI	TCGA	7 cut(s)	267, 276, 528, 606, 619, 775, 785
TatI	WGTACW	1 cut(s)	945
Tru1I	TTAA	3 cut(s)	26, 801, 923
Tru9I	TTAA	3 cut(s)	26, 801, 923
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	3 cut(s)	49, 292, 874
TseI	GCWGC	3 cut(s)	62, 171, 692
Tsp45I	GTSAC	3 cut(s)	49, 292, 874
TspDTI	ATGAA	4 cut(s)	123, 139, 194, 311
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	1067
XapI	RAATTY	6 cut(s)	257, 395, 471, 759, 781, 954
XceI	RCATGY	4 cut(s)	23, 187, 614, 952
XhoI	CTCGAG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	2 cut(s)	36, 1064
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.