Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003708.1

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

49968 .. 51836

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003708.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggccacggccctcaaggctgtgtatgtctcggacgttcccaatgtcgaccaagtctcggaaattaatgctgcattggccctaatcaaagctccatggtcagcgcaaggagtgaatgatcatgatggaggcgtagaaactaaatgcggattcaaatggccaaagtttgtggtgatgggacacagaggcagcggaatgaacatgttgcaatcatctgatgacagaatgaaatccatcaaagagaactcaattcgctccttcaactctgccgctcaattccccatcgattacattgaatttgatgttcaagtgaccaaagatgactgtccagtcatttttcatgacaactttatcgctaccgaggagaatggtgttctagttgagaaaagagtaacagacattactttgccagaatttctttcatatggaccccagaaagaacttggaaaggcaggaatccctatgtttagaaaaactaaagaggggacaatttttgagtggaaggtagagaaggatgaccccctatgcacattgcaagatgtgtttgagaaagttgaccactctgtgggtttcaatatagaactgaagtttgatgatcagtttgtgtacaatgagaaacaacaccaacatgttcttgaagtagtcttgcaggtatatttcctcaccaatggagggtccgaaatatacaaagacgttagaaggaactctttggaagaggcaattaaggtgtgtatggttggcggtttgcaaggagttgtgtcagaagcgagagctatcttgagagatccgaatgcagtaaccaggattaaagactccaacctttcccttctaacctatggccaattaaataatgtgccagagaaagtttacatgcaacatctgatgggtgttgagggagtgattgttgatctggtaggagagatcaccgaggtagtttctgatccaaacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

317

Amino Acids

35.46

Weight (kDa)

4.94

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	4 cut(s)	147, 192, 270, 741
AclWI	GGATC	2 cut(s)	779, 935
AcoI	YGGCCR	3 cut(s)	3, 158, 838
AcsI	RAATTY	2 cut(s)	296, 413
AcuI	CTGAAG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	565
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	3 cut(s)	58, 565, 672
AflIII	ACRYGT	2 cut(s)	201, 628
AgsI	TTSAA	6 cut(s)	154, 262, 296, 308, 574, 638
AjnI	CCWGG	1 cut(s)	800
AluBI	AGCT	2 cut(s)	92, 773
AluI	AGCT	2 cut(s)	92, 773
Alw26I	GTCTC	2 cut(s)	34, 61
AlwI	GGATC	2 cut(s)	779, 935
AoxI	GGCC	5 cut(s)	3, 9, 78, 158, 838
ApeKI	GCWGC	2 cut(s)	71, 189
ApoI	RAATTY	2 cut(s)	296, 413
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	4 cut(s)	10, 79, 428, 675
AsuHPI	GGTGA	3 cut(s)	184, 655, 916
AvaII	GGWCC	2 cut(s)	428, 675
BalI	TGGCCA	3 cut(s)	5, 160, 840
BbvI	GCAGC	2 cut(s)	58, 201
BccI	CCATC	5 cut(s)	119, 169, 242, 290, 877
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	802
BclI	TGATCA	2 cut(s)	118, 595
BcoDI	GTCTC	2 cut(s)	34, 61
BfaI	CTAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	72, 190, 270
BlsI	GCNGC	3 cut(s)	73, 191, 271
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	428, 675
BmgT120I	GGNCC	4 cut(s)	10, 79, 428, 675
BmiI	GGNNCC	2 cut(s)	430, 676
BmrFI	CCNGG	1 cut(s)	802
BpuEI	CTTGAG	1 cut(s)	799
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	6, 95, 360, 927
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 565, 672
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	802
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	6, 95, 360, 927
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	58, 565, 672
BseMI	GCAATG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	58, 201
BshFI	GGCC	5 cut(s)	5, 11, 80, 160, 840
BshVI	ATCGAT	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	192, 499
BslI	CCNNNNNNNGG	3 cut(s)	58, 565, 672
BsmAI	GTCTC	2 cut(s)	34, 61
BsmFI	GGGAC	2 cut(s)	192, 499
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	5 cut(s)	5, 11, 80, 160, 840
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	4 cut(s)	147, 192, 270, 741
BspANI	GGCC	5 cut(s)	5, 11, 80, 160, 840
BspDI	ATCGAT	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	121, 340
BspLI	GGNNCC	2 cut(s)	430, 676
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	779, 935
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	6, 95, 360, 927
BssMI	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	802
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	606
BstDSI	CCRYGG	2 cut(s)	6, 95
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	121, 598, 787, 910, 924, 943
BstMAI	GTCTC	2 cut(s)	34, 61
BstMBI	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 77
BstNI	CCWGG	1 cut(s)	802
BstNSI	RCATGY	3 cut(s)	205, 632, 874
BstSCI	CCNGG	1 cut(s)	800
BstV1I	GCAGC	2 cut(s)	58, 201
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	5, 11, 80, 160, 840
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	6, 95
BtsCI	GGATG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	640
CciI	TCATGA	2 cut(s)	121, 340
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	10, 79, 428, 675
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	607
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	6 cut(s)	96, 122, 202, 341, 629, 871
CviJI	RGCY	8 cut(s)	5, 11, 20, 80, 92, 160, 773, 840
CviKI_1	RGCY	8 cut(s)	5, 11, 20, 80, 92, 160, 773, 840
CviQI	GTAC	1 cut(s)	607
DpnI	GATC	6 cut(s)	120, 597, 786, 909, 923, 942
DpnII	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
DraIII	CACNNNGTG	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	3 cut(s)	3, 158, 838
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	428, 675
Eco57I	CTGAAG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	6 cut(s)	99, 125, 205, 344, 632, 874
FalI	AAGNNNNNCTT	2 cut(s)	691, 723
FaqI	GGGAC	2 cut(s)	192, 499
FatI	CATG	6 cut(s)	95, 121, 201, 340, 628, 870
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	2 cut(s)	118, 595
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	72, 190, 270
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	72, 190, 270
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	72, 190, 270
HaeIII	GGCC	5 cut(s)	5, 11, 80, 160, 840
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	6 cut(s)	99, 125, 205, 344, 632, 874
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	2 cut(s)	49, 556
HindII	GTYRAC	2 cut(s)	49, 556
HinfI	GANTC	3 cut(s)	150, 456, 812
HphI	GGTGA	3 cut(s)	184, 655, 916
Hpy166II	GTNNAC	4 cut(s)	49, 556, 607, 868
Hpy188I	TCNGA	8 cut(s)	34, 61, 217, 679, 763, 789, 882, 940
Hpy188III	TCNNGA	4 cut(s)	122, 341, 635, 778
Hpy8I	GTNNAC	4 cut(s)	49, 556, 607, 868
HpyAV	CCTTC	5 cut(s)	268, 496, 505, 693, 836
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	36, 693
HpyCH4V	TGCA	8 cut(s)	74, 208, 528, 535, 649, 748, 794, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 77
HpySE526I	ACGT	2 cut(s)	36, 693
Hsp92II	CATG	6 cut(s)	99, 125, 205, 344, 632, 874
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	2 cut(s)	118, 595
Kzo9I	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
LmnI	GCTCC	2 cut(s)	97, 260
LpnPI	CCDG	9 cut(s)	342, 423, 438, 446, 635, 787, 814, 870, 896
Lsp1109I	GCAGC	2 cut(s)	58, 201
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	36, 693
MaeIII	GTNAC	3 cut(s)	310, 391, 796
MalI	GATC	6 cut(s)	120, 597, 786, 909, 923, 942
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
MboII	GAAGA	1 cut(s)	725
MflI	RGATCY	1 cut(s)	784
MlsI	TGGCCA	3 cut(s)	5, 160, 840
MluCI	AATT	8 cut(s)	63, 249, 275, 296, 413, 489, 720, 842
MluNI	TGGCCA	3 cut(s)	5, 160, 840
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	840
Mox20I	TGGCCA	3 cut(s)	5, 160, 840
MscI	TGGCCA	3 cut(s)	5, 160, 840
MseI	TTAA	4 cut(s)	66, 723, 807, 845
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	3 cut(s)	5, 160, 840
MspA1I	CMGCKG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	802
MwoI	GCNNNNNNNGC	2 cut(s)	17, 77
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
NlaIII	CATG	6 cut(s)	99, 125, 205, 344, 632, 874
NlaIV	GGNNCC	2 cut(s)	430, 676
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	3 cut(s)	205, 632, 874
PagI	TCATGA	2 cut(s)	121, 340
PciI	ACATGT	2 cut(s)	201, 628
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	150, 456
PflFI	GACNNNGTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	73, 191, 271
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PscI	ACATGT	2 cut(s)	201, 628
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	800
PspN4I	GGNNCC	2 cut(s)	430, 676
PspPI	GGNCC	4 cut(s)	10, 79, 428, 675
PsuI	RGATCY	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	627
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	66, 723, 807, 845
SatI	GCNGC	3 cut(s)	72, 190, 270
Sau3AI	GATC	6 cut(s)	118, 595, 784, 907, 921, 940
Sau96I	GGNCC	4 cut(s)	10, 79, 428, 675
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	1 cut(s)	802
SinI	GGWCC	2 cut(s)	428, 675
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	14, 778
SmoI	CTYRAG	2 cut(s)	14, 778
Sse9I	AATT	8 cut(s)	63, 249, 275, 296, 413, 489, 720, 842
SsiI	CCGC	4 cut(s)	147, 192, 270, 741
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	800
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	39, 696
TaqI	TCGA	2 cut(s)	48, 285
TasI	AATT	8 cut(s)	63, 249, 275, 296, 413, 489, 720, 842
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	150, 456
Tru1I	TTAA	4 cut(s)	66, 723, 807, 845
Tru9I	TTAA	4 cut(s)	66, 723, 807, 845
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	71, 189
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	212, 242, 329, 411
Tth111I	GACNNNGTC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	428, 675
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	2 cut(s)	296, 413
XceI	RCATGY	3 cut(s)	205, 632, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.