Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

46851947 .. 46853097

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20112

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTGGTATTGATAAGACACAGAGGAAATGGAACGAACATGTTGCAGTCCTCTGATATCAGAATGAGAGGAATCAAAGAGAACTCAATCCTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTCGACGTTCAGGTGACCAAAGATGACTGTCCAGTAATTTTTCATGACAACTTTATCGTCAGCGAGGACAAGGATGTTTTCATTGGGAAGAGAGTTACAGACCTTAAGCTACCAGAATTTCTTTCCTATGAACCCCAGAAACAGCTTGGAGAGTTTGATGACCACATAGTCTACAAAGAGAGACAGCTCAAGCATGTTCTTCAAGTAATCTTGCAGTTGTTTAAACATGTGGTAAATGAGTATGTAGAGGGCAGGCGAATCTTCTTTTCAACCTTTCAGCCTGATGCTGCTCTTTTGATAAGAAAAATGCAGAGCAGTTACCCTGTATATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

156

Amino Acids

18.33

Weight (kDa)

6.2

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	7 - 90	1.2e-17	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	2 cut(s)	39, 361
AgsI	TTSAA	3 cut(s)	100, 338, 405
AluBI	AGCT	3 cut(s)	244, 280, 322
AluI	AGCT	3 cut(s)	244, 280, 322
Alw26I	GTCTC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	107, 422
ApoI	RAATTY	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	94, 409
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	108, 423
BlsI	GCNGC	2 cut(s)	109, 424
BmsI	GCATC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	94, 409
BsmAI	GTCTC	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	389
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	310
BstNSI	RCATGY	3 cut(s)	43, 332, 365
BstPI	GGTNACC	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	94, 409
BtsCI	GGATG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	178
CviAII	CATG	4 cut(s)	40, 179, 329, 362
CviJI	RGCY	4 cut(s)	244, 280, 322, 415
CviKI_1	RGCY	4 cut(s)	244, 280, 322, 415
DraI	TTTAAA	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	58
FaeI	CATG	4 cut(s)	43, 182, 332, 365
FaiI	YATR	8 cut(s)	41, 180, 264, 302, 330, 363, 378, 463
FatI	CATG	4 cut(s)	39, 178, 328, 361
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	108, 423
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	108, 423
FspBI	CTAG	1 cut(s)	469
GluI	GCNGC	2 cut(s)	108, 423
Hin1II	CATG	4 cut(s)	43, 182, 332, 365
HinfI	GANTC	2 cut(s)	72, 393
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	55, 62
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	46, 349, 445
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	43, 182, 332, 365
LpnPI	CCDG	6 cut(s)	131, 180, 261, 284, 373, 429
Lsp1109I	GCAGC	2 cut(s)	94, 409
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	148, 229, 452
MboII	GAAGA	3 cut(s)	235, 326, 388
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	4 cut(s)	113, 120, 171, 251
MnlI	CCTC	6 cut(s)	17, 61, 62, 101, 193, 376
MseI	TTAA	2 cut(s)	240, 357
MspCI	CTTAAG	1 cut(s)	239
MssI	GTTTAAAC	1 cut(s)	358
MunI	CAATTG	1 cut(s)	120
NlaIII	CATG	4 cut(s)	43, 182, 332, 365
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	3 cut(s)	43, 332, 365
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	2 cut(s)	39, 361
PfeI	GAWTC	2 cut(s)	72, 393
PkrI	GCNGC	2 cut(s)	109, 424
PmeI	GTTTAAAC	1 cut(s)	358
PscI	ACATGT	2 cut(s)	39, 361
PspEI	GGTNACC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	240, 357
SatI	GCNGC	2 cut(s)	108, 423
SetI	ASST	7 cut(s)	144, 150, 240, 246, 282, 324, 410
SfaNI	GCATC	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	239, 323
SmoI	CTYRAG	2 cut(s)	239, 323
Sse9I	AATT	4 cut(s)	113, 120, 171, 251
SspMI	CTAG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	113, 120, 171, 251
TfiI	GAWTC	2 cut(s)	72, 393
Tru1I	TTAA	2 cut(s)	240, 357
Tru9I	TTAA	2 cut(s)	240, 357
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	107, 422
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	167, 205, 279
Vha464I	CTTAAG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	3 cut(s)	43, 332, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.