Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337509.1

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

124 .. 587

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgtatgctgatgctagaaagaactctttggaagaagcagttaaggtgtgcttggcaggtggtttgcacggcattgtttcagaagtgagtgctatcttgggaaatccagaagctgtaaccaggattcaagggaaaaaactccacctgttaacttacggccaactaaataatattgtaaaggctgtgtacatgcaacttcagatgggtgtagacggagtgattgttgaccttgttcaagagatcacagaggcagtttgtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

87

Amino Acids

9.35

Weight (kDa)

5.22

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	128, 236
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	157
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	85, 172
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
BseBI	CCWGG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	159
BspMI	ACCTGC	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	186
BssMI	GATC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	186
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	3 cut(s)	113, 159, 182
CviKI_1	RGCY	3 cut(s)	113, 159, 182
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	6, 191
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	2 cut(s)	150, 226
HindII	GTYRAC	2 cut(s)	150, 226
HinfI	GANTC	1 cut(s)	124
HpaI	GTTAAC	1 cut(s)	150
Hpy166II	GTNNAC	4 cut(s)	150, 187, 211, 226
Hpy188I	TCNGA	2 cut(s)	82, 201
Hpy188III	TCNNGA	2 cut(s)	107, 236
Hpy8I	GTNNAC	4 cut(s)	150, 187, 211, 226
HpyCH4V	TGCA	2 cut(s)	67, 193
Hsp92II	CATG	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	240
LpnPI	CCDG	5 cut(s)	42, 106, 120, 133, 158
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	115, 257
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	1 cut(s)	44
MnlI	CCTC	1 cut(s)	241
MseI	TTAA	2 cut(s)	42, 149
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	42, 149
Sau3AI	GATC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	5 cut(s)	48, 61, 115, 147, 231
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	119
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	42, 149
Tru9I	TTAA	2 cut(s)	42, 149
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	228
XceI	RCATGY	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.