Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

25724420 .. 25726840

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTCTCAAGGCGCCTCAGCTCTGCTTCTTTCCCAAGCTTCTCCAAGCCCAAGACTATCCCACATTACCCTTCTTCTGCCCGCCATTGATGACTGAAGATGGGGATGATGAAGGTGAAGCAAGAAAATGCAGGCACAAATGGCCGAAGTTGGTATTGATAGGACACAGGGGAAATGGAATGAACATGTTGCAGTCCTCTGATATCAGAATGAGAGCAATCAAAGAGAACTCAATCCTCTCCTTCAATTCTGCTGCTCAATTCCCAATTGATTTCGTTGAGTTGGACGTTCAGGTGACCAAAGATGACTGTCCAGTAATTTTTCATGACAACTTTATCGTCACTCATGACAAGGGAGTTTTCATTGAGAAGAGAGTTACAGACCTTAAGCTACCAGAATTTCTTTCATATGGACCCCAGAAACATCTTGGAGAGATGGGAATGCCTCTGTTTAGAAAAATGAAAGATGGAAGAATTTTTGAGTGGAAGGTGGAAAAGGATGCCCCCCTATGCACATTGCAAGAGGCGTTTGAGAACCTTGAGCATTCGCTGGGATTTAATATGGAACTGAAGTTTGATGATCACATAGTCTACACAGAGAGACAGCTCAAGCATGTTCTTCAAGTAATTTTGCAGGTGATAAATGATTATGCAAAGGGAAGACCAATCTTCTTCTCAACCTTTCAGCCTGATGCAGCTCTTTTGATAAGAAAAATGCAGAGCAGTTATCCTGTATATTTCCTCACTGAAGGAGGGTATCATCAAATGCATGTTGATGCTAGAAAAAACTCATTGGAAGCAGCAGTTAAGGTGTGCTTGGCAGGTGGTTTGCAAGGCATTGTTTCAGAAGTGAGTGCTATCTTGGGAAATGAAGAAGCTGTAACCGGGATTCAAGGGAACAATCTTCGCCTGTTAACTTACGGCCAACTAAATAATATGGTAAAGGCTGTGTGCCTGCAACTTCAGATGGGTGTTGACGGAGTGATTGTTGACCTTGTTCAAGAGATCACAGGTGCAGTTTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

343

Amino Acids

38.61

Weight (kDa)

5.72

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	56 - 333	1e-39	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	625, 812
Acc36I	ACCTGC	2 cut(s)	625, 812
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	1 cut(s)	83
AcoI	YGGCCR	2 cut(s)	143, 922
AcsI	RAATTY	2 cut(s)	398, 474
AcuI	CTGAAG	4 cut(s)	117, 590, 768, 947
AcyI	GRCGYC	1 cut(s)	14
AflII	CTTAAG	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	247, 623, 893, 1001
AluBI	AGCT	6 cut(s)	22, 40, 391, 607, 698, 878
AluI	AGCT	6 cut(s)	22, 40, 391, 607, 698, 878
Alw26I	GTCTC	1 cut(s)	595
AoxI	GGCC	2 cut(s)	143, 922
ApeKI	GCWGC	3 cut(s)	254, 695, 800
ApoI	RAATTY	2 cut(s)	398, 474
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	886
AsuHPI	GGTGA	3 cut(s)	128, 307, 649
AvaII	GGWCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	241, 707, 812
BccI	CCATC	4 cut(s)	95, 430, 461, 961
BceAI	ACGGC	1 cut(s)	937
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	886
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	1 cut(s)	780
BfoI	RGCGCY	1 cut(s)	17
BfrI	CTTAAG	1 cut(s)	386
BfuAI	ACCTGC	2 cut(s)	625, 812
BisI	GCNGC	3 cut(s)	255, 696, 801
BlsI	GCNGC	3 cut(s)	256, 697, 802
Bme1390I	CCNGG	1 cut(s)	886
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	15, 415
BmrFI	CCNGG	1 cut(s)	886
BmsI	GCATC	3 cut(s)	490, 682, 766
BpiI	GAAGAC	1 cut(s)	667
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	560, 593
BpuMI	CCSGG	1 cut(s)	886
BsaHI	GRCGYC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	972, 1002
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	515
BseGI	GGATG	2 cut(s)	112, 505
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	241, 707, 812
BseYI	CCCAGC	1 cut(s)	550
BshFI	GGCC	2 cut(s)	145, 924
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	885
BsmAI	GTCTC	1 cut(s)	595
BsmI	GAATGC	2 cut(s)	447, 544
BsnI	GGCC	2 cut(s)	145, 924
Bsp143I	GATC	2 cut(s)	580, 1005
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	145, 924
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	2 cut(s)	325, 346
BspLI	GGNNCC	2 cut(s)	15, 415
BspMI	ACCTGC	2 cut(s)	625, 812
BspT107I	GGYRCC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	580, 1005
BssNI	GRCGYC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	83, 134, 956
BstDEI	CTNAG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	112, 505
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	583, 1008
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	2 cut(s)	580, 1005
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 142
BstNSI	RCATGY	3 cut(s)	190, 617, 773
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	884
BstV1I	GCAGC	3 cut(s)	241, 707, 812
BstV2I	GAAGAC	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	145, 924
BtsCI	GGATG	2 cut(s)	112, 505
BtsIMutI	CAGTG	1 cut(s)	744
BveI	ACCTGC	2 cut(s)	625, 812
Cac8I	GCNNGC	3 cut(s)	83, 134, 956
CciI	TCATGA	2 cut(s)	325, 346
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	413
CviAII	CATG	5 cut(s)	187, 326, 347, 614, 770
DdeI	CTNAG	1 cut(s)	18
DinI	GGCGCC	1 cut(s)	15
DpnI	GATC	2 cut(s)	582, 1007
DpnII	GATC	2 cut(s)	580, 1005
EaeI	YGGCCR	2 cut(s)	143, 922
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	4 cut(s)	117, 590, 768, 947
Eco91I	GGTNACC	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	771
EgeI	GGCGCC	1 cut(s)	15
EheI	GGCGCC	1 cut(s)	15
FaeI	CATG	5 cut(s)	190, 329, 350, 617, 773
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FatI	CATG	5 cut(s)	186, 325, 346, 613, 769
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	255, 696, 801
FokI	GGATG	2 cut(s)	119, 512
Fsp4HI	GCNGC	3 cut(s)	255, 696, 801
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	255, 696, 801
GsaI	CCCAGC	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	145, 924
HapII	CCGG	1 cut(s)	885
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	190, 329, 350, 617, 773
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	3 cut(s)	915, 976, 991
HindII	GTYRAC	3 cut(s)	915, 976, 991
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	889
HpaI	GTTAAC	1 cut(s)	915
HpaII	CCGG	1 cut(s)	885
HphI	GGTGA	3 cut(s)	128, 307, 649
Hpy166II	GTNNAC	4 cut(s)	592, 915, 976, 991
Hpy188I	TCNGA	4 cut(s)	202, 209, 847, 966
Hpy188III	TCNNGA	3 cut(s)	326, 347, 1001
Hpy8I	GTNNAC	4 cut(s)	592, 915, 976, 991
HpyAV	CCTTC	5 cut(s)	82, 107, 253, 481, 743
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 142
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	190, 329, 350, 617, 773
HspAI	GCGC	1 cut(s)	14
KasI	GGCGCC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	580
KspAI	GTTAAC	1 cut(s)	915
Kzo9I	GATC	2 cut(s)	580, 1005
Lsp1109I	GCAGC	3 cut(s)	241, 707, 812
LweI	GCATC	3 cut(s)	490, 682, 766
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	5 cut(s)	295, 340, 376, 880, 1022
MalI	GATC	2 cut(s)	582, 1007
MboI	GATC	2 cut(s)	580, 1005
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	7 cut(s)	247, 260, 267, 318, 398, 474, 627
Mly113I	GGCGCC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	7 cut(s)	27, 208, 248, 456, 517, 746, 752
Mph1103I	ATGCAT	1 cut(s)	771
MseI	TTAA	4 cut(s)	387, 558, 807, 914
MslI	CAYNNNNRTG	1 cut(s)	774
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	885
MspR9I	CCNGG	1 cut(s)	886
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	2 cut(s)	447, 544
MwoI	GCNNNNNNNGC	2 cut(s)	11, 142
NarI	GGCGCC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	886
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	2 cut(s)	580, 1005
NlaIII	CATG	5 cut(s)	190, 329, 350, 617, 773
NlaIV	GGNNCC	2 cut(s)	15, 415
NmuCI	GTSAC	3 cut(s)	295, 340, 1022
NsiI	ATGCAT	1 cut(s)	771
NspI	RCATGY	3 cut(s)	190, 617, 773
PagI	TCATGA	2 cut(s)	325, 346
PaqCI	CACCTGC	2 cut(s)	625, 812
PciI	ACATGT	1 cut(s)	186
PctI	GAATGC	2 cut(s)	447, 544
PfeI	GAWTC	1 cut(s)	889
PkrI	GCNGC	3 cut(s)	256, 697, 802
PluTI	GGCGCC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	15, 415
PspPI	GGNCC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	4 cut(s)	387, 558, 807, 914
SatI	GCNGC	3 cut(s)	255, 696, 801
Sau3AI	GATC	2 cut(s)	580, 1005
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	886
SfaNI	GCATC	3 cut(s)	490, 682, 766
SfoI	GGCGCC	1 cut(s)	15
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	4 cut(s)	8, 386, 539, 608
SmoI	CTYRAG	4 cut(s)	8, 386, 539, 608
Sse9I	AATT	7 cut(s)	247, 260, 267, 318, 398, 474, 627
SsiI	CCGC	1 cut(s)	83
SspDI	GGCGCC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	1 cut(s)	884
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	291
TasI	AATT	7 cut(s)	247, 260, 267, 318, 398, 474, 627
TfiI	GAWTC	1 cut(s)	889
Tru1I	TTAA	4 cut(s)	387, 558, 807, 914
Tru9I	TTAA	4 cut(s)	387, 558, 807, 914
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	3 cut(s)	295, 340, 1022
TseI	GCWGC	3 cut(s)	254, 695, 800
Tsp45I	GTSAC	3 cut(s)	295, 340, 1022
TspDTI	ATGAA	7 cut(s)	126, 197, 314, 352, 396, 476, 885
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	1 cut(s)	751
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	398, 474
XceI	RCATGY	3 cut(s)	190, 617, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.