Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003242.1

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

110508 .. 111660

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003242.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggcaattgtgccaatcacagccgctggtgctcccggtgctgtttctggagcactagttactccaggatatcgggatggtgctcaatcacagctttgcaagacacaagttactcggtgggaagaggggaatggtgttggtaagatgggccgttttggctctatcttgtgccccatttggatggacacagaggatggaacgaacatgttgcagtcctctgatatcagaatgagaggaatcaaagggaactcaatcctctccttcaatactgctgctcaattcccaattgattttgttgagttcgacgttcaggtgaccaaagatgactgtccagtaattttccatgacagctttatcgtcaacgaggacaaggttagttggttcttgatcgatccctctaaacccataagttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

138

Amino Acids

14.96

Weight (kDa)

4.67

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	265
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	94, 351
AluI	AGCT	2 cut(s)	94, 351
Alw21I	GWGCWC	3 cut(s)	34, 55, 85
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	34, 55, 85
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	4 cut(s)	71, 139, 175, 188
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	1 cut(s)	56
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	24, 273
BlsI	GCNGC	2 cut(s)	25, 274
Bme1390I	CCNGG	2 cut(s)	36, 66
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	36, 66
BpmI	CTGGAG	2 cut(s)	48, 69
BpuMI	CCSGG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	390
BseGI	GGATG	3 cut(s)	82, 186, 199
BseNI	ACTGG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	3 cut(s)	34, 55, 85
BsiSI	CCGG	1 cut(s)	36
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	34, 55, 85, 173
Bsp143I	GATC	2 cut(s)	387, 391
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	150
BspDI	ATCGAT	1 cut(s)	390
BspPI	GGATC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	2 cut(s)	387, 391
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	117
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	82, 186, 199
BstKTI	GATC	2 cut(s)	390, 394
BstMBI	GATC	2 cut(s)	387, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 38, 156
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	208
BstPI	GGTNACC	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	34, 64
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	82, 186, 199
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	390
CviAII	CATG	2 cut(s)	205, 344
CviJI	RGCY	5 cut(s)	23, 94, 150, 159, 351
CviKI_1	RGCY	5 cut(s)	23, 94, 150, 159, 351
DpnI	GATC	2 cut(s)	389, 393
DpnII	GATC	2 cut(s)	387, 391
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco32I	GATATC	2 cut(s)	71, 223
Eco91I	GGTNACC	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	2 cut(s)	71, 223
FaeI	CATG	2 cut(s)	208, 347
FaiI	YATR	3 cut(s)	206, 345, 407
FatI	CATG	2 cut(s)	204, 343
Fnu4HI	GCNGC	2 cut(s)	24, 273
FokI	GGATG	3 cut(s)	89, 193, 206
Fsp4HI	GCNGC	2 cut(s)	24, 273
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	24, 273
GsuI	CTGGAG	2 cut(s)	48, 69
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	208, 347
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	220, 227
Hpy188III	TCNNGA	4 cut(s)	48, 74, 385, 414
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	99, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 38, 156
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	208, 347
Kzo9I	GATC	2 cut(s)	387, 391
LmnI	GCTCC	2 cut(s)	37, 50
LpnPI	CCDG	7 cut(s)	12, 33, 49, 51, 78, 296, 345
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	58, 109, 313
MalI	GATC	2 cut(s)	389, 393
MboI	GATC	2 cut(s)	387, 391
MboII	GAAGA	1 cut(s)	134
MfeI	CAATTG	2 cut(s)	6, 285
MhlI	GDGCHC	4 cut(s)	34, 55, 85, 173
MluCI	AATT	4 cut(s)	6, 278, 285, 336
MnlI	CCTC	7 cut(s)	118, 184, 226, 227, 266, 358, 406
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	36, 66
MunI	CAATTG	2 cut(s)	6, 285
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	29, 38, 156
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	387, 391
NlaIII	CATG	2 cut(s)	208, 347
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	208
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	237
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	25, 274
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	64
PspEI	GGTNACC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	179
SatI	GCNGC	2 cut(s)	24, 273
Sau3AI	GATC	2 cut(s)	387, 391
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	2 cut(s)	36, 66
SduI	GDGCHC	4 cut(s)	34, 55, 85, 173
SetI	ASST	5 cut(s)	96, 309, 315, 353, 375
SmiMI	CAYNNNNRTG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	4 cut(s)	6, 278, 285, 336
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	34, 64
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	303, 390
TasI	AATT	4 cut(s)	6, 278, 285, 336
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	313
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.