Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

67526901 .. 67528045

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGAGGAATCAAAGAGAACTCAATCCTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTCGACGTTCAGGTGACCAAAGATGACTGTCCAGTAATTTTCCATGACAACTTTATCGTCAGCGAGGACAAGGATGTTTTCATTGAGAAGAGAGTTACAGACCTTAAGCTACCAGAATTTCTTTCCTATGGACCCCAGAAACAGCTTGGAGAGCTCAAGCATGTTCTTCAAGTAATCTTGCAGGTGGTAAATGAGTATGCAAAGGGAAGACCAATCTTCTTTTCAACCTTTCAGCCTGATGCTACTCTTTTGATAAGAAAAATGCATAGCAGTTACCCTGTATATTTCCAGCTTGAAGGAAGGTCTCAAATGTATGCTGATGTTAGAAAGAACTCTTTGGAAGAAGCAGTTAAGATGTGCATGGCAGGTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

149

Amino Acids

17.13

Weight (kDa)

5.61

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	5 - 66	6.5e-15	Glycerophosphoryl diester phosphodiesterase family
GDPD	PF03009	66 - 140	5.9e-06	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	244, 428
Acc36I	ACCTGC	2 cut(s)	244, 428
AcsI	RAATTY	1 cut(s)	188
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	37, 242, 297, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	4 cut(s)	181, 217, 226, 364
AluI	AGCT	4 cut(s)	181, 217, 226, 364
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	244, 428
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	205
BspMI	ACCTGC	2 cut(s)	244, 428
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	176
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	151
BveI	ACCTGC	2 cut(s)	244, 428
Cfr13I	GGNCC	1 cut(s)	203
CviAII	CATG	3 cut(s)	116, 233, 433
CviJI	RGCY	5 cut(s)	181, 217, 226, 307, 364
CviKI_1	RGCY	5 cut(s)	181, 217, 226, 307, 364
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	3 cut(s)	119, 236, 436
FaiI	YATR	8 cut(s)	117, 201, 234, 270, 339, 355, 387, 434
FatI	CATG	3 cut(s)	115, 232, 432
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	119, 236, 436
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	43, 362, 366
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	253, 272, 337, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	119, 236, 436
LpnPI	CCDG	9 cut(s)	68, 117, 198, 221, 239, 321, 363, 374, 423
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	301
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	85, 166, 344
MboII	GAAGA	5 cut(s)	172, 230, 280, 291, 425
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	4 cut(s)	50, 57, 108, 188
MnlI	CCTC	2 cut(s)	38, 130
Mph1103I	ATGCAT	1 cut(s)	339
MseI	TTAA	2 cut(s)	177, 423
MspCI	CTTAAG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	119, 236, 436
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	1 cut(s)	236
PaqCI	CACCTGC	2 cut(s)	244, 428
PfeI	GAWTC	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	177, 423
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	176, 227
SmoI	CTYRAG	2 cut(s)	176, 227
Sse9I	AATT	4 cut(s)	50, 57, 108, 188
SstI	GAGCTC	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	50, 57, 108, 188
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	177, 423
Tru9I	TTAA	2 cut(s)	177, 423
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.