Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

49695447 .. 49699015

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTGGTATTGATAAGACACAGAGGAAATGGAACAAACATGTTGCAGTCCTCTGATATCAGAATGACAGGAATCAAAGAGAACTCAATCCTCTCCTTCAATACTGCTGCTCAATTCCAAATTGATTTTGTTGAGTTCGACGTTCAGAATTTACTTTTGTTGGTGACCAAAGATGACTGTCCAGTAATTTTTCATGACAACTTTATCGTCAGCGAGGACAAGGATGTTTTCATTGGGAAGAGAGTTACAGACCTTAAGCTACAGAATTTCTTTCCTATGGACCCCAGAAACAGCTTGGAGAGGTCATCATCAATGTTGATTTGTTCGTTTTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

112

Amino Acids

12.88

Weight (kDa)

5.2

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	7 - 94	2e-13	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	148, 265
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	259, 294
AluI	AGCT	2 cut(s)	259, 294
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	148, 265
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	233
BstAFI	CTTAAG	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	43
BstPI	GGTNACC	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	229
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	2 cut(s)	40, 194
CviJI	RGCY	2 cut(s)	259, 294
CviKI_1	RGCY	2 cut(s)	259, 294
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	280
Eco91I	GGTNACC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	58
FaeI	CATG	2 cut(s)	43, 197
FaiI	YATR	4 cut(s)	41, 195, 278, 334
FatI	CATG	2 cut(s)	39, 193
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	43, 197
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	55, 62, 147
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	43, 197
LpnPI	CCDG	3 cut(s)	54, 195, 298
Lsp1109I	GCAGC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	163, 244
MboII	GAAGA	1 cut(s)	250
MluCI	AATT	5 cut(s)	113, 120, 148, 186, 265
MnlI	CCTC	5 cut(s)	17, 61, 101, 208, 294
MseI	TTAA	1 cut(s)	255
MspCI	CTTAAG	1 cut(s)	254
NlaIII	CATG	2 cut(s)	43, 197
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	193
PciI	ACATGT	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	280
SetI	ASST	5 cut(s)	144, 255, 261, 296, 305
SfcI	CTRYAG	1 cut(s)	260
SgeI	CNNG	8 cut(s)	52, 81, 194, 206, 226, 232, 297, 307
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	113, 120, 148, 186, 265
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	138
TasI	AATT	5 cut(s)	113, 120, 148, 186, 265
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	182, 220, 321
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	148, 265
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.