Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

9253172 .. 9254777

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1124800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTCTCAAGGCCGTTCATGCCTCCGACGTTCCGAACCTCGACCAAGTCACAGAAAGTGCCGCCGCATTGGCCGTATATTCGCCGTGGTTGGCTCAAGGTGTGAAAGATGAAGGTGAGGAAACGAAATGGGGATACAAATGGCCAAAGTTCGTCGTGATGGGACACAGAGGCAGCGGGATGAACATGTTGCAGTCTTCTGATGCAAAGCTTAAATCCATCAAAGAGAACTCCATTCTCTCTTTCAATGCCGCCACTCAGTTCCCGATCGATTTCGTCGAGTTCGACGTTCAGGTGACCAAAGACGACTGTCCGGTCATTTTTCATGACAACTTTATTGGCGCCGAGGACAAGGGTGTTTTCAAGGAGGAAAGGGTTACAGACATTACTCTGCTAGAATTTCTCTCCTACGGACCCCAGAGAGAGGGCGGAAAGGTATCACAAATGGTGGGGAGGCCTTTGGTCAGAAAAATAAAAGACGGGAGAATTTTCGACTGGAAGGTAGAACAGGATGACTCCCTATGCACATTGCAGGAGGTGTTCGAGAAAGTTGACCGTTCCAAGGGTTTTAACATTGAGTTGAAGTTCGATGATCAGATTGTCTACAAAGAAGAAAAGCTCGAACATGTTCTTCAAGTAATTTTGCAGGTGGTAATTAAGTATGCCAAGGACAGGCCGATCCTGTTTTCGAGCTTTCAGCCTGATGCTGCATTGCTGATGAGAAAAATGCAGACGACATATCCTGTTTATTTCCTCACAAACGGAGGGTCTGAAATTTACACCGACATTCGAAGGAATTCGCTGGAAGAGGCCATGAAGTTGTGTTCGGGAGGTGGTTTGCAAGGAATTGTATCAGAAGTAAAAGCTATCTTGAGAAATCCAGGGGTAGTGACCAAGATTAAACAGGCCAAACTCTGCATTATAACCTATGGACAATTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

315

Amino Acids

35.42

Weight (kDa)

6.17

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	56 - 311	2.9e-37	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
AarI	CACCTGC	1 cut(s)	637
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	5 cut(s)	63, 66, 177, 252, 429
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	2 cut(s)	72, 143
AcsI	RAATTY	4 cut(s)	398, 486, 774, 796
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	424, 562, 672
AflIII	ACRYGT	2 cut(s)	186, 625
AgsI	TTSAA	4 cut(s)	247, 364, 583, 635
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	4 cut(s)	211, 619, 693, 866
AluI	AGCT	4 cut(s)	211, 619, 693, 866
AlwI	GGATC	1 cut(s)	673
AoxI	GGCC	7 cut(s)	12, 72, 143, 455, 674, 810, 906
ApeKI	GCWGC	2 cut(s)	174, 707
ApoI	RAATTY	4 cut(s)	398, 486, 774, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
Asp700I	GAANNNNTTC	2 cut(s)	627, 796
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	128, 307
AsuII	TTCGAA	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	186, 694
BccI	CCATC	2 cut(s)	154, 227
BceAI	ACGGC	2 cut(s)	59, 70
BciT130I	CCWGG	1 cut(s)	882
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	592
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	5 cut(s)	63, 66, 175, 252, 708
BlsI	GCNGC	5 cut(s)	64, 67, 176, 253, 709
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	343, 415
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	193, 694
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	790
BpuEI	CTTGAG	2 cut(s)	81, 892
Bsa29I	ATCGAT	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	5 cut(s)	86, 345, 561, 666, 881
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 562, 672
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	2 cut(s)	527, 710
BseBI	CCWGG	1 cut(s)	882
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	5 cut(s)	86, 345, 561, 666, 881
BseGI	GGATG	2 cut(s)	186, 517
BseLI	CCNNNNNNNGG	3 cut(s)	424, 562, 672
BseMI	GCAATG	2 cut(s)	527, 710
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	186, 694
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	7 cut(s)	14, 74, 145, 457, 676, 812, 908
BshNI	GGYRCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	424, 562, 672
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	7 cut(s)	14, 74, 145, 457, 676, 812, 908
Bsp119I	TTCGAA	1 cut(s)	790
Bsp143I	GATC	3 cut(s)	267, 592, 678
BspACI	CCGC	5 cut(s)	63, 66, 177, 252, 429
BspANI	GGCC	7 cut(s)	14, 74, 145, 457, 676, 812, 908
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	343, 415
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	673
BspT104I	TTCGAA	1 cut(s)	790
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	527, 710
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	86, 345, 561, 666, 881
BssMI	GATC	3 cut(s)	267, 592, 678
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	561, 666
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	2 cut(s)	311, 557
Bst6I	CTCTTC	1 cut(s)	801
BstACI	GRCGYC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	790
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	86
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	186, 517
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	3 cut(s)	270, 595, 681
BstMBI	GATC	3 cut(s)	267, 592, 678
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 71
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	2 cut(s)	190, 629
BstPAI	GACNNNNGTC	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	880
BstV1I	GCAGC	2 cut(s)	186, 694
BstV2I	GAAGAC	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	7 cut(s)	14, 74, 145, 457, 676, 812, 908
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	186, 517
BveI	ACCTGC	1 cut(s)	637
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	413
ClaI	ATCGAT	1 cut(s)	270
CviAII	CATG	5 cut(s)	20, 187, 326, 626, 814
DdeI	CTNAG	1 cut(s)	258
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	3 cut(s)	269, 594, 680
DpnII	GATC	3 cut(s)	267, 592, 678
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	72, 143
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
EciI	GGCGGA	1 cut(s)	444
Eco130I	CCWWGG	2 cut(s)	561, 666
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	2 cut(s)	561, 666
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
ErhI	CCWWGG	2 cut(s)	561, 666
FaeI	CATG	5 cut(s)	23, 190, 329, 629, 817
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	19, 186, 325, 625, 813
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	5 cut(s)	63, 66, 175, 252, 708
FokI	GGATG	2 cut(s)	193, 524
Fsp4HI	GCNGC	5 cut(s)	63, 66, 175, 252, 708
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	5 cut(s)	63, 66, 175, 252, 708
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	7 cut(s)	14, 74, 145, 457, 676, 812, 908
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	5 cut(s)	23, 190, 329, 629, 817
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	2 cut(s)	128, 307
Hpy166II	GTNNAC	2 cut(s)	553, 604
Hpy188I	TCNGA	7 cut(s)	28, 36, 202, 467, 597, 772, 856
Hpy188III	TCNNGA	6 cut(s)	157, 265, 326, 544, 828, 871
Hpy8I	GTNNAC	2 cut(s)	553, 604
Hpy99I	CGWCG	4 cut(s)	32, 158, 281, 290
HpyAV	CCTTC	3 cut(s)	107, 493, 786
HpyCH4III	ACNGT	2 cut(s)	311, 557
HpyCH4IV	ACGT	2 cut(s)	30, 288
HpyCH4V	TGCA	9 cut(s)	193, 206, 525, 532, 646, 710, 730, 841, 918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 71
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	30, 288
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	5 cut(s)	23, 190, 329, 629, 817
HspAI	GCGC	1 cut(s)	342
KasI	GGCGCC	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	267, 592, 678
Lsp1109I	GCAGC	2 cut(s)	186, 694
LweI	GCATC	2 cut(s)	193, 694
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	2 cut(s)	30, 288
MaeIII	GTNAC	4 cut(s)	49, 295, 376, 889
MalI	GATC	3 cut(s)	269, 594, 680
MboI	GATC	3 cut(s)	267, 592, 678
MboII	GAAGA	4 cut(s)	189, 623, 623, 818
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	8 cut(s)	398, 486, 639, 654, 774, 796, 846, 935
MluNI	TGGCCA	1 cut(s)	145
Mly113I	GGCGCC	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	51
Mox20I	TGGCCA	1 cut(s)	145
MroXI	GAANNNNTTC	2 cut(s)	627, 796
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	5 cut(s)	213, 570, 657, 900, 938
Msp20I	TGGCCA	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 71
NarI	GGCGCC	1 cut(s)	342
NdeII	GATC	3 cut(s)	267, 592, 678
NlaIII	CATG	5 cut(s)	23, 190, 329, 629, 817
NlaIV	GGNNCC	2 cut(s)	343, 415
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	49, 295, 889
NspI	RCATGY	2 cut(s)	190, 629
NspV	TTCGAA	1 cut(s)	790
PagI	TCATGA	1 cut(s)	325
PaqCI	CACCTGC	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	2 cut(s)	186, 625
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 282, 285
PdmI	GAANNNNTTC	2 cut(s)	627, 796
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	64, 67, 176, 253, 709
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	509
PscI	ACATGT	2 cut(s)	186, 625
PshAI	GACNNNNGTC	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	880
PspEI	GGTNACC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	2 cut(s)	343, 415
PspPI	GGNCC	1 cut(s)	413
PsyI	GACNNNGTC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	213, 570, 657, 900, 938
SatI	GCNGC	5 cut(s)	63, 66, 175, 252, 708
Sau3AI	GATC	3 cut(s)	267, 592, 678
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	882
SfaNI	GCATC	2 cut(s)	193, 694
SfoI	GGCGCC	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	790
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	8, 96, 871
SmoI	CTYRAG	3 cut(s)	8, 96, 871
Sse9I	AATT	8 cut(s)	398, 486, 639, 654, 774, 796, 846, 935
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	5 cut(s)	63, 66, 177, 252, 429
SspDI	GGCGCC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	2 cut(s)	561, 666
TaaI	ACNGT	2 cut(s)	311, 557
TaiI	ACGT	2 cut(s)	33, 291
TasI	AATT	8 cut(s)	398, 486, 639, 654, 774, 796, 846, 935
TauI	GCSGC	3 cut(s)	65, 68, 254
Tru1I	TTAA	5 cut(s)	213, 570, 657, 900, 938
Tru9I	TTAA	5 cut(s)	213, 570, 657, 900, 938
TseFI	GTSAC	3 cut(s)	49, 295, 889
TseI	GCWGC	2 cut(s)	174, 707
Tsp45I	GTSAC	3 cut(s)	49, 295, 889
TspDTI	ATGAA	5 cut(s)	8, 126, 197, 314, 830
TspGWI	ACGGA	2 cut(s)	426, 777
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	4 cut(s)	398, 486, 774, 796
XceI	RCATGY	2 cut(s)	190, 629
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	2 cut(s)	627, 796
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.