Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

9084704 .. 9117160

Gene Structure 32457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0112400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGACATGGATGTTGATGAACCAACCAAAGGCCAAGAAGAAAAGCAAGGAAAGCCCATAATCGTAGTATTGATGGGTGCACCCGGTAGCGGCAAGTCCACATTCTGCGAACAAGTCATGGGCTCCTCTGTTCGTCCCTGGGTTCGGATCTGCCAGGATACTATCAAAAATGGGAAAGCCGGAACGAAAGCTCAGTGTATAGAGAGTGCGAGGAGTACATTGAGGGAAGGAAAGAGTGTGTTTATAGATAGATGCAATCTAGAGAAAGAGCAAAGATATGAGTTTGTGAAGCTTGGTGGTCCTCAAGTGGATGTTCATGCTGTGGTGCTTGATCTTCCTGCTAAGCTTTGTATATCGCGGTCGGTGAAGCGAACGGGACATGAGGGGAACTTGCAAGGCGGAAAAGCTGCGGCTGTTGTGAATAGAATGCTGCAGAAGAAAGAATTGCCGAATCTGAGCGAAGGGTTTGGTAGGATCACTTTTTGCCAGAATGAGAGTGATGTTGAATCTGCCATTCGTACATATAGTGGACTCGGTCCGTTGGATACACTTCCCCATGGCACTTTTGGCCAGAAGAGCCCGGGTGCAAAAGTTCAACTTGGTATAATGAAATTCCTAAAGAAAACAGATGCTCCTACTAATACTGAATCGACTTCGAACAAGGTTCAGGATTCTAATGCTTCTCAAATTACCGGGGGAAAGGATACCAGTGTGAAAGGAACAGGTTTGTTTATTGAAAGTGGTAGTATGGAGTCCAAGAAAGGTGAACGGCCTGTTGTAGATTCTGCTGGCACTGATGTCTCTCTTGACAATGCTCCCACCCTGGCATTTCCATCTATTTCCACAGCAGATTTTCAGTTTGACCTTGAGAAGGCATCTGACATTATTGTAGAGAAAGTTGCAGAATTTGTAAATAAACTTGGAAATGCAAGACTTGTTTTAGTGGACTTGACTCATAAATCGAAGATTTTGTCCTTGGTGAGGGCTAAAGCTTCACAGAAAAACATTGACTCCAAGAGGTTCTTCACATTTGTAGGAGATATCACTAAGCTTCATTCAGAAGGAGGTCTTTGCTGCAATGTGATAGCTAATGCTGCTAACTGGCGACTTAAACCAGGAGGTGGTGGTGTCAATGCTGCAATCTTCAATGCTGGAGGTCCAGCTTTAGAGGTTGCAACCAAAGAACAAGCCAAATCTCTGTATCCTGGGAATGCTGTGGTTGTTCCTCTCCCTTCAACTTCTCCTTTGTTTTGTAGGGAAGGGGTAACCCATGTCATACATGTTCTTGGACCCAATATGAACCCACAGAGACCAAATTATCTTGACAATGACTATAGCAAAGGCTGCAAAATTCTCCATGACACTTATACTTCACTTTTCGAAGGTTTTGCATCAATAGTGAGGACCCAAAAGAAGGTATTTAAGGGAAGCTTTGGAAACCTTCGGTTGAAGCTGCCAGAGTCAAAAGATCACTCTGAGAGTGGGCCTACAAATCACTCTACAAATACCTATCAAAAGATCAAGAGAGAGGATCTTCATGAATCTGAAAGGAACAAACGGAGTAAAGGAGATCAAGCTGAAGCTGAAAACGTCTCTGATTCTAATGCTAGTAAATCAAACCTCCACTCTGATGGAAGCAAGAATAAATCCTGGGGAACATGGGCCCAGGCTGTCTACAACATTGCCATGCATCCAGAGAAGCAGAGGGATGTAGTACTAGAGATATCAGATGATGTCGTTGTACTAAATGATCTTTATCCAAAGGCACAAAAGCATCTCCTGGTGGTAGCGCGACATCCTGGTCTTGATCGCTTGGCAGATGTATGCAAAGAACACATTCAGTTGCTAAGGACAATGCATGTGGTTGGTTTGAAATGGGCTGAAAAGTTCTTACATGATGATTCAACATTGGTCTTTCGTCTTGGATATCACTCGGAACCATCAATGCGACAGCTGCACCTACATGTAATCAGCCAGGATTTTAATTCAGCACATTTGAAGAACAAGAAACATTGGAACTCCTTTAATACTGCTTTCTTTCTCGACTCTGTGGATGTGCTAGAGGAAGTCAGTAGTGACAGGAAGGCAATACTGAATGATGATGAAAGCCTGATGTCTATGGAGTTACGATGTAATCGATGTAGAAGTGCTCACCCCACCATTCCCAAATTGAAATTGCACATTGGCAGATGTCGAGCCTACTTCCCAAGCACCCTGCTTGAAAATGGTCGGCTGGTAACTGCACCAAGCAACTTCAGCAATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

756

Amino Acids

83.14

Weight (kDa)

8.87

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	22 - 148	6.5e-12	AAA domain
Macro	PF01661	364 - 445	1.2e-06	Macro domain
DcpS_C	PF11969	557 - 671	1.2e-24	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	567 - 660	9.7e-09	HIT domain
zf-C2HE	PF16278	676 - 728	1e-08	C2HE / C2H2 / C2HC zinc-binding finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1800
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	1674
AccII	CGCG	2 cut(s)	358, 1792
AciI	CCGC	4 cut(s)	90, 358, 399, 410
AclWI	GGATC	4 cut(s)	155, 482, 1539, 2258
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	3 cut(s)	611, 905, 1350
AcuI	CTGAAG	2 cut(s)	1599, 2239
AfaI	GTAC	4 cut(s)	217, 520, 1716, 1743
AfiI	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 871, 981, 1121, 1414
AflIII	ACRYGT	2 cut(s)	1279, 1963
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
Alw21I	GWGCWC	2 cut(s)	82, 2152
Alw26I	GTCTC	3 cut(s)	805, 1303, 1597
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	4 cut(s)	155, 482, 1539, 2258
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	5 cut(s)	31, 568, 770, 1484, 1662
ApaI	GGGCCC	1 cut(s)	1666
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	8 cut(s)	407, 430, 1074, 1094, 1136, 1344, 1453, 1954
ApoI	RAATTY	3 cut(s)	611, 905, 1350
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
Asp700I	GAANNNNTTC	1 cut(s)	1836
AspLEI	GCGC	1 cut(s)	1792
AspS9I	GGNCC	8 cut(s)	299, 536, 1157, 1289, 1404, 1484, 1662, 1663
AsuC2I	CCSGG	4 cut(s)	84, 581, 582, 694
AsuHPI	GGTGA	4 cut(s)	376, 776, 991, 2144
AsuII	TTCGAA	2 cut(s)	656, 1380
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	5 cut(s)	299, 536, 1157, 1289, 1404
BaeGI	GKGCMC	2 cut(s)	82, 1666
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	1 cut(s)	570
BanII	GRGCYC	3 cut(s)	125, 581, 1666
Bbv12I	GWGCWC	2 cut(s)	82, 2152
BbvI	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BccI	CCATC	4 cut(s)	67, 841, 1625, 1948
BceAI	ACGGC	1 cut(s)	785
BcgI	CGANNNNNNTGC	2 cut(s)	1370, 1404
BciVI	GTATCC	4 cut(s)	151, 538, 697, 1212
BcnI	CCSGG	4 cut(s)	84, 581, 582, 694
BcoDI	GTCTC	3 cut(s)	805, 1303, 1597
BfaI	CTAG	4 cut(s)	260, 1608, 1718, 2060
BfmI	CTRYAG	2 cut(s)	431, 1333
BfuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BlpI	GCTNAGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	1716
Bme18I	GGWCC	5 cut(s)	299, 536, 1157, 1289, 1404
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	8 cut(s)	299, 536, 1157, 1289, 1404, 1484, 1662, 1663
BmiI	GGNNCC	5 cut(s)	124, 1291, 1406, 1664, 1938
BmsI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
BpmI	CTGGAG	1 cut(s)	1173
Bpu10I	CCTNAGC	1 cut(s)	1847
Bpu1102I	GCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	2 cut(s)	656, 1380
BpuEI	CTTGAG	2 cut(s)	288, 887
BpuMI	CCSGG	4 cut(s)	84, 581, 582, 694
Bsa29I	ATCGAT	1 cut(s)	2137
BsaBI	GATNNNNATC	1 cut(s)	1755
BsaI	GGTCTC	1 cut(s)	1303
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 995, 1025
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 871, 981, 1121, 1414
Bse1I	ACTGG	2 cut(s)	708, 1106
Bse3DI	GCAATG	3 cut(s)	1084, 1680, 2266
Bse8I	GATNNNNATC	1 cut(s)	1755
BseCI	ATCGAT	1 cut(s)	2137
BseGI	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BseJI	GATNNNNATC	1 cut(s)	1755
BseLI	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 871, 981, 1121, 1414
BseMI	GCAATG	3 cut(s)	1084, 1680, 2266
BseMII	CTCAG	3 cut(s)	206, 446, 1467
BseNI	ACTGG	2 cut(s)	708, 1106
BseRI	GAGGAG	2 cut(s)	115, 226
BseSI	GKGCMC	2 cut(s)	82, 1666
BseXI	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BsgI	GTGCAG	2 cut(s)	1940, 2226
Bsh1236I	CGCG	2 cut(s)	358, 1792
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	33, 570, 772, 1486, 1664
BshVI	ATCGAT	1 cut(s)	2137
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	82, 2152
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	4 cut(s)	84, 180, 581, 693
BslFI	GGGAC	2 cut(s)	120, 390
BslI	CCNNNNNNNGG	7 cut(s)	29, 89, 144, 871, 981, 1121, 1414
BsmAI	GTCTC	3 cut(s)	805, 1303, 1597
BsmBI	CGTCTC	1 cut(s)	1597
BsmFI	GGGAC	2 cut(s)	120, 390
BsmI	GAATGC	2 cut(s)	432, 1216
BsnI	GGCC	5 cut(s)	33, 570, 772, 1486, 1664
Bso31I	GGTCTC	1 cut(s)	1303
BsoBI	CYCGRG	1 cut(s)	580
Bsp119I	TTCGAA	2 cut(s)	656, 1380
Bsp120I	GGGCCC	1 cut(s)	1662
Bsp1286I	GDGCHC	5 cut(s)	82, 125, 581, 1666, 2152
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	4 cut(s)	90, 358, 399, 410
BspANI	GGCC	5 cut(s)	33, 570, 772, 1486, 1664
BspCNI	CTCAG	3 cut(s)	205, 447, 1468
BspDI	ATCGAT	1 cut(s)	2137
BspFNI	CGCG	2 cut(s)	358, 1792
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	5 cut(s)	124, 1291, 1406, 1664, 1938
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	4 cut(s)	155, 482, 1539, 2258
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	2 cut(s)	656, 1380
BspTNI	GGTCTC	1 cut(s)	1303
BsrDI	GCAATG	3 cut(s)	1084, 1680, 2266
BsrI	ACTGG	2 cut(s)	708, 1106
BssT1I	CCWWGG	2 cut(s)	556, 975
Bst6I	CTCTTC	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	1344
BstBI	TTCGAA	2 cut(s)	656, 1380
BstC8I	GCNNGC	1 cut(s)	790
BstDEI	CTNAG	6 cut(s)	192, 342, 455, 1047, 1476, 1847
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	1264
BstENI	CCTNNNNNAGG	2 cut(s)	869, 979
BstF5I	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BstFNI	CGCG	2 cut(s)	358, 1792
BstHHI	GCGC	1 cut(s)	1792
BstMAI	GTCTC	3 cut(s)	805, 1303, 1597
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 567, 576, 1094, 1344, 1954, 2256
BstNSI	RCATGY	3 cut(s)	1283, 1862, 1967
BstPI	GGTNACC	1 cut(s)	1264
BstSFI	CTRYAG	2 cut(s)	431, 1333
BstSLI	GKGCMC	2 cut(s)	82, 1666
BstUI	CGCG	2 cut(s)	358, 1792
BstV1I	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
BstX2I	RGATCY	2 cut(s)	147, 1531
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	2 cut(s)	147, 1531
Bsu15I	ATCGAT	1 cut(s)	2137
BsuI	GTATCC	4 cut(s)	151, 538, 697, 1212
BsuRI	GGCC	5 cut(s)	33, 570, 772, 1486, 1664
BsuTUI	ATCGAT	1 cut(s)	2137
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	6 cut(s)	16, 316, 1690, 1714, 1795, 2059
BtsIMutI	CAGTG	3 cut(s)	200, 715, 792
Cac8I	GCNNGC	1 cut(s)	790
CciI	TCATGA	1 cut(s)	1537
CfoI	GCGC	1 cut(s)	1792
Cfr13I	GGNCC	8 cut(s)	299, 536, 1157, 1289, 1404, 1484, 1662, 1663
Cfr9I	CCCGGG	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	2137
CpoI	CGGWCCG	1 cut(s)	536
Csp6I	GTAC	4 cut(s)	216, 519, 1715, 1742
CspCI	CAANNNNNGTGG	2 cut(s)	1842, 1877
CspI	CGGWCCG	1 cut(s)	536
CviQI	GTAC	4 cut(s)	216, 519, 1715, 1742
DdeI	CTNAG	6 cut(s)	192, 342, 455, 1047, 1476, 1847
DrdI	GACNNNNNNGTC	1 cut(s)	1800
DseDI	GACNNNNNNGTC	1 cut(s)	1800
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	2 cut(s)	556, 975
Eco24I	GRGCYC	3 cut(s)	125, 581, 1666
Eco31I	GGTCTC	1 cut(s)	1303
Eco32I	GATATC	3 cut(s)	1042, 1725, 1928
Eco47I	GGWCC	5 cut(s)	299, 536, 1157, 1289, 1404
Eco57I	CTGAAG	2 cut(s)	1599, 2239
Eco88I	CYCGRG	1 cut(s)	580
Eco91I	GGTNACC	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	2 cut(s)	869, 979
EcoO109I	RGGNCCY	1 cut(s)	1404
EcoO65I	GGTNACC	1 cut(s)	1264
EcoRV	GATATC	3 cut(s)	1042, 1725, 1928
EcoT14I	CCWWGG	2 cut(s)	556, 975
EcoT22I	ATGCAT	2 cut(s)	1692, 1860
EcoT38I	GRGCYC	3 cut(s)	125, 581, 1666
ErhI	CCWWGG	2 cut(s)	556, 975
Esp3I	CGTCTC	1 cut(s)	1597
FalI	AAGNNNNNCTT	8 cut(s)	582, 614, 1007, 1039, 1053, 1085, 1415, 1447
FaqI	GGGAC	2 cut(s)	120, 390
FblI	GTMKAC	1 cut(s)	1674
FokI	GGATG	6 cut(s)	23, 323, 1677, 1721, 1782, 2066
FriOI	GRGCYC	3 cut(s)	125, 581, 1666
FspBI	CTAG	4 cut(s)	260, 1608, 1718, 2060
GlaI	GCGC	1 cut(s)	1791
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	5 cut(s)	33, 570, 772, 1486, 1664
HapII	CCGG	4 cut(s)	84, 180, 581, 693
HhaI	GCGC	1 cut(s)	1792
Hin6I	GCGC	1 cut(s)	1790
HinP1I	GCGC	1 cut(s)	1790
HindIII	AAGCTT	5 cut(s)	290, 344, 990, 1049, 1429
HpaII	CCGG	4 cut(s)	84, 180, 581, 693
HphI	GGTGA	4 cut(s)	376, 776, 991, 2144
Hpy166II	GTNNAC	6 cut(s)	80, 99, 530, 767, 946, 1675
Hpy188III	TCNNGA	9 cut(s)	260, 668, 806, 1322, 1522, 1538, 1694, 1805, 2042
Hpy8I	GTNNAC	6 cut(s)	80, 99, 530, 767, 946, 1675
HpyCH4IV	ACGT	1 cut(s)	1590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 567, 576, 1094, 1344, 1954, 2256
HpyF3I	CTNAG	6 cut(s)	192, 342, 455, 1047, 1476, 1847
HpySE526I	ACGT	1 cut(s)	1590
HspAI	GCGC	1 cut(s)	1790
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	3 cut(s)	128, 637, 820
Lsp1109I	GCAGC	8 cut(s)	394, 417, 1061, 1081, 1123, 1331, 1440, 1941
LweI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
MaeI	CTAG	4 cut(s)	260, 1608, 1718, 2060
MaeII	ACGT	1 cut(s)	1590
MaeIII	GTNAC	4 cut(s)	1264, 2075, 2124, 2236
MboII	GAAGA	9 cut(s)	50, 326, 448, 586, 976, 1015, 1135, 1526, 2011
MflI	RGATCY	2 cut(s)	147, 1531
MhlI	GDGCHC	5 cut(s)	82, 125, 581, 1666, 2152
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	9 cut(s)	443, 611, 687, 905, 1315, 1350, 1984, 2168, 2174
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	6 cut(s)	525, 761, 946, 1004, 1469, 2039
MmeI	TCCRAC	1 cut(s)	522
Mox20I	TGGCCA	1 cut(s)	570
Mph1103I	ATGCAT	2 cut(s)	1692, 1860
MroXI	GAANNNNTTC	1 cut(s)	1836
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
MslI	CAYNNNNRTG	3 cut(s)	1629, 1685, 1962
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	1954
MspI	CCGG	4 cut(s)	84, 180, 581, 693
Mva1269I	GAATGC	2 cut(s)	432, 1216
MvnI	CGCG	2 cut(s)	358, 1792
MwoI	GCNNNNNNNGC	7 cut(s)	52, 567, 576, 1094, 1344, 1954, 2256
NciI	CCSGG	4 cut(s)	84, 581, 582, 694
NcoI	CCATGG	1 cut(s)	556
NlaIV	GGNNCC	5 cut(s)	124, 1291, 1406, 1664, 1938
NmuCI	GTSAC	1 cut(s)	2075
NsiI	ATGCAT	2 cut(s)	1692, 1860
NspI	RCATGY	3 cut(s)	1283, 1862, 1967
NspV	TTCGAA	2 cut(s)	656, 1380
PagI	TCATGA	1 cut(s)	1537
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	2 cut(s)	1279, 1963
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	2134
PctI	GAATGC	2 cut(s)	432, 1216
PdmI	GAANNNNTTC	1 cut(s)	1836
PfeI	GAWTC	8 cut(s)	451, 506, 647, 671, 782, 1541, 1598, 1901
PflFI	GACNNNGTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	6 cut(s)	525, 760, 946, 1004, 1468, 2039
PpsI	GAGTC	6 cut(s)	525, 760, 946, 1004, 1468, 2039
PpuMI	RGGWCCY	1 cut(s)	1404
PscI	ACATGT	2 cut(s)	1279, 1963
Psp5II	RGGWCCY	1 cut(s)	1404
PspEI	GGTNACC	1 cut(s)	1264
PspN4I	GGNNCC	5 cut(s)	124, 1291, 1406, 1664, 1938
PspOMI	GGGCCC	1 cut(s)	1662
PspPI	GGNCC	8 cut(s)	299, 536, 1157, 1289, 1404, 1484, 1662, 1663
PspPPI	RGGWCCY	1 cut(s)	1404
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	147, 1531
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	1954
RsaI	GTAC	4 cut(s)	217, 520, 1716, 1743
RsaNI	GTAC	4 cut(s)	216, 519, 1715, 1742
RseI	CAYNNNNRTG	3 cut(s)	1629, 1685, 1962
Rsr2I	CGGWCCG	1 cut(s)	536
RsrII	CGGWCCG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Sau96I	GGNCC	8 cut(s)	299, 536, 1157, 1289, 1404, 1484, 1662, 1663
ScaI	AGTACT	1 cut(s)	1716
SchI	GAGTC	6 cut(s)	525, 761, 946, 1004, 1469, 2039
SduI	GDGCHC	5 cut(s)	82, 125, 581, 1666, 2152
SfaNI	GCATC	6 cut(s)	242, 619, 884, 1400, 1699, 1783
SfcI	CTRYAG	2 cut(s)	431, 1333
SfuI	TTCGAA	2 cut(s)	656, 1380
SinI	GGWCC	5 cut(s)	299, 536, 1157, 1289, 1404
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	3 cut(s)	1629, 1685, 1962
SmlI	CTYRAG	2 cut(s)	303, 866
SmoI	CTYRAG	2 cut(s)	303, 866
Sse9I	AATT	9 cut(s)	443, 611, 687, 905, 1315, 1350, 1984, 2168, 2174
SsiI	CCGC	4 cut(s)	90, 358, 399, 410
SspMI	CTAG	4 cut(s)	260, 1608, 1718, 2060
StyI	CCWWGG	2 cut(s)	556, 975
TaiI	ACGT	1 cut(s)	1593
TaqI	TCGA	7 cut(s)	650, 656, 962, 1380, 2043, 2137, 2194
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	9 cut(s)	443, 611, 687, 905, 1315, 1350, 1984, 2168, 2174
TatI	WGTACW	3 cut(s)	215, 1714, 1741
TauI	GCSGC	2 cut(s)	93, 413
TfiI	GAWTC	8 cut(s)	451, 506, 647, 671, 782, 1541, 1598, 1901
Tru1I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
Tru9I	TTAA	4 cut(s)	1110, 1422, 1983, 2025
TscAI	CASTG	3 cut(s)	200, 715, 799
TseFI	GTSAC	1 cut(s)	2075
TseI	GCWGC	8 cut(s)	407, 430, 1074, 1094, 1136, 1344, 1453, 1954
Tsp45I	GTSAC	1 cut(s)	2075
TspDTI	ATGAA	8 cut(s)	33, 305, 623, 1043, 1313, 1526, 1554, 2118
TspGWI	ACGGA	2 cut(s)	528, 1573
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	3 cut(s)	200, 715, 799
Tth111I	GACNNNGTC	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	1121
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	5 cut(s)	299, 536, 1157, 1289, 1404
XagI	CCTNNNNNAGG	2 cut(s)	869, 979
XapI	RAATTY	3 cut(s)	611, 905, 1350
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	3 cut(s)	1283, 1862, 1967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	1674
XmnI	GAANNNNTTC	1 cut(s)	1836
XspI	CTAG	4 cut(s)	260, 1608, 1718, 2060
ZrmI	AGTACT	1 cut(s)	1716
Zsp2I	ATGCAT	2 cut(s)	1692, 1860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.