Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

25726934 .. 25729328

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTACGGCCCTTAAGGCTGTGCATGTCTCAGACGTTCCCAATCTTGACCAAGCCTCGGAAATTAATGCGGCATTGGCCCTTATCAAAGCTCCATGGTCGGCACATGGTGTAAATGATCATGATGAAGGCGTAGAGACCAAATGTGGATTCAAATGGCCGAAATTTGTGGTGATGGGACACAGAGGCAGCGGAATGAACATGTTGCAATCATCTGATGACAGAATGAAATCCATTAAAGAAAACTCAATTCGCTCCTTCAACTCTGCCGCTCAATTGCCTATCGATTACATTGAATTTGATGTTCAAGTGACCAAAGATGACTGTCCAGTCATTTTTCATGACAGCTTTATCGCCACGGAGGAGAAGGGTGTTTTTGTTGAAAAGAGAGTTACAGACATTACTTTGCCAGAATTTCTTTCATATGGACCCCAGACAGACCTTGGAAAGGTGAGTATCCCTATGTTTAGAAAAACAAAAGAGGGGACAATTTTTGAGTGGAAGGTAGAGAAGGATGATTCCCTATGTACATTGCAAGATGTGTTTGAGAAGGTCGACCGTTCGATGGGTTTCAATATAGAACTGAAGTTTGATGATCAGTTTGTGTACATTGAGAAACAACTCCGACATGTCCTCCAAGTAGTCTTGCAGGTGGTAAACAAGCATGCGAAGGACAGACCGATTATGTTTTCGAGCTTTCAGCCTGATGTAGTGCTGATGATCAGAAAACTGCAGAGCACCTATCCGGTATATTTCCTCACCAATGGAGGGTCGGAAATTTACAAAGATGTTAGAAGGAACTCTTTGGAAGAGGCAATTAAGGTGTGTATGGCTGGCGGTTTGCAAGGAATTGTGTCAGAAGTAAGAGCTATCTTGAGAGATCCAAATGCAGTAACCCGGATTAAAGACTCCAATCTTTGCCTTCTAACCTATGGCCAATTAAATAATATACCAGAGAAAGTTTACATGCAACATCTCATGGGTGTCGAGGGAGTGATTGTTGACCTTGTCGGAGAGATCACCGAGGCAGTTTCTGATCCAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

350

Amino Acids

39.3

Weight (kDa)

5.38

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	61 - 338	7.6e-47	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	640
AccBSI	CCGCTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	4 cut(s)	71, 192, 270, 837
AclWI	GGATC	2 cut(s)	875, 1031
AcoI	YGGCCR	2 cut(s)	158, 934
AcsI	RAATTY	4 cut(s)	164, 296, 413, 777
AcuI	CTGAAG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	529, 608
AfiI	CCNNNNNNNGG	4 cut(s)	58, 448, 565, 768
AflII	CTTAAG	1 cut(s)	14
AflIII	ACRYGT	2 cut(s)	201, 628
AgsI	TTSAA	6 cut(s)	154, 262, 296, 308, 383, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	4 cut(s)	92, 348, 696, 869
AluI	AGCT	4 cut(s)	92, 348, 696, 869
Alw21I	GWGCWC	1 cut(s)	740
Alw26I	GTCTC	2 cut(s)	34, 131
AlwI	GGATC	2 cut(s)	875, 1031
AlwNI	CAGNNNCTG	1 cut(s)	1034
AoxI	GGCC	4 cut(s)	9, 78, 158, 934
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	4 cut(s)	164, 296, 413, 777
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	10, 79, 428
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	4 cut(s)	184, 463, 751, 1012
AvaII	GGWCC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	740
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	2 cut(s)	169, 559
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	3 cut(s)	118, 595, 720
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	2 cut(s)	34, 131
BfmI	CTRYAG	1 cut(s)	731
BfrI	CTTAAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	467
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	72, 190, 270
BlsI	GCNGC	3 cut(s)	73, 191, 271
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	10, 79, 428
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	898
BpuEI	CTTGAG	1 cut(s)	895
BpuMI	CCSGG	1 cut(s)	898
Bsa29I	ATCGAT	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	57, 95, 357, 442, 1023
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	4 cut(s)	618, 648, 984, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 448, 565, 768
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	530
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	5 cut(s)	57, 95, 357, 442, 1023
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	58, 448, 565, 768
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	559
BshFI	GGCC	4 cut(s)	11, 80, 160, 936
BshVI	ATCGAT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	746, 898
BslFI	GGGAC	2 cut(s)	192, 499
BslI	CCNNNNNNNGG	4 cut(s)	58, 448, 565, 768
BsmAI	GTCTC	2 cut(s)	34, 131
BsmFI	GGGAC	2 cut(s)	192, 499
BsnI	GGCC	4 cut(s)	11, 80, 160, 936
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp1407I	TGTACA	2 cut(s)	527, 606
Bsp143I	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	4 cut(s)	71, 192, 270, 837
BspANI	GGCC	4 cut(s)	11, 80, 160, 936
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	121, 340
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	875, 1031
BspTI	CTTAAG	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	530
BsrGI	TGTACA	2 cut(s)	527, 606
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	5 cut(s)	57, 95, 357, 442, 1023
BssMI	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
BssT1I	CCWWGG	2 cut(s)	95, 442
Bst4CI	ACNGT	2 cut(s)	326, 560
Bst6I	CTCTTC	1 cut(s)	804
BstAFI	CTTAAG	1 cut(s)	14
BstAUI	TGTACA	2 cut(s)	527, 606
BstC8I	GCNNGC	2 cut(s)	666, 835
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	2 cut(s)	95, 357
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	6 cut(s)	121, 598, 723, 883, 1020, 1039
BstMAI	GTCTC	2 cut(s)	34, 131
BstMBI	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
BstMCI	CGRYCG	1 cut(s)	559
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 77
BstNSI	RCATGY	5 cut(s)	29, 205, 632, 668, 970
BstSCI	CCNGG	1 cut(s)	896
BstSFI	CTRYAG	1 cut(s)	731
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
Bsu15I	ATCGAT	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	4 cut(s)	11, 80, 160, 936
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	95, 357
BtsCI	GGATG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	666, 835
CaiI	CAGNNNCTG	1 cut(s)	1034
CciI	TCATGA	2 cut(s)	121, 340
Cfr13I	GGNCC	3 cut(s)	10, 79, 428
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	528, 607
CviQI	GTAC	2 cut(s)	528, 607
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	6 cut(s)	120, 597, 722, 882, 1019, 1038
DpnII	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
DraIII	CACNNNGTG	1 cut(s)	110
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	2 cut(s)	158, 934
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	2 cut(s)	95, 442
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoT14I	CCWWGG	2 cut(s)	95, 442
ErhI	CCWWGG	2 cut(s)	95, 442
FalI	AAGNNNNNCTT	2 cut(s)	787, 819
FaqI	GGGAC	2 cut(s)	192, 499
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	3 cut(s)	118, 595, 720
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	3 cut(s)	72, 190, 270
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	72, 190, 270
GluI	GCNGC	3 cut(s)	72, 190, 270
HaeIII	GGCC	4 cut(s)	11, 80, 160, 936
HapII	CCGG	2 cut(s)	746, 898
HincII	GTYRAC	2 cut(s)	556, 1003
HindII	GTYRAC	2 cut(s)	556, 1003
HinfI	GANTC	3 cut(s)	150, 518, 908
HpaII	CCGG	2 cut(s)	746, 898
HphI	GGTGA	4 cut(s)	184, 463, 751, 1012
Hpy166II	GTNNAC	5 cut(s)	556, 607, 658, 964, 1003
Hpy188I	TCNGA	9 cut(s)	34, 61, 217, 626, 725, 775, 859, 1013, 1036
Hpy188III	TCNNGA	4 cut(s)	47, 122, 341, 874
Hpy8I	GTNNAC	5 cut(s)	556, 607, 658, 964, 1003
HpyAV	CCTTC	9 cut(s)	122, 268, 361, 496, 505, 544, 664, 789, 932
HpyCH4III	ACNGT	2 cut(s)	326, 560
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	8 cut(s)	25, 208, 535, 649, 733, 844, 890, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 77
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	36
Ksp22I	TGATCA	3 cut(s)	118, 595, 720
Kzo9I	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
LmnI	GCTCC	2 cut(s)	97, 260
LpnPI	CCDG	9 cut(s)	342, 423, 446, 635, 717, 759, 819, 911, 966
Lsp1109I	GCAGC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	310, 391, 892
MalI	GATC	6 cut(s)	120, 597, 722, 882, 1019, 1038
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
MboII	GAAGA	1 cut(s)	821
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	936
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	3 cut(s)	649, 753, 991
Mox20I	TGGCCA	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	6 cut(s)	15, 66, 237, 819, 903, 941
Msp20I	TGGCCA	1 cut(s)	936
MspA1I	CMGCKG	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	2 cut(s)	746, 898
MspR9I	CCNGG	1 cut(s)	898
MunI	CAATTG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	17, 77
NciI	CCSGG	1 cut(s)	898
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	5 cut(s)	29, 205, 632, 668, 970
PaeI	GCATGC	1 cut(s)	668
PagI	TCATGA	2 cut(s)	121, 340
PaqCI	CACCTGC	1 cut(s)	640
PciI	ACATGT	2 cut(s)	201, 628
PfeI	GAWTC	2 cut(s)	150, 518
PflFI	GACNNNGTC	1 cut(s)	1007
PkrI	GCNGC	3 cut(s)	73, 191, 271
PleI	GAGTC	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	902
PscI	ACATGT	2 cut(s)	201, 628
PshBI	ATTAAT	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	3 cut(s)	10, 79, 428
PstI	CTGCAG	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	1 cut(s)	880
PsyI	GACNNNGTC	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	529, 608
RsaNI	GTAC	2 cut(s)	528, 607
SalI	GTCGAC	1 cut(s)	554
SaqAI	TTAA	6 cut(s)	15, 66, 237, 819, 903, 941
SatI	GCNGC	3 cut(s)	72, 190, 270
Sau3AI	GATC	6 cut(s)	118, 595, 720, 880, 1017, 1036
Sau96I	GGNCC	3 cut(s)	10, 79, 428
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	1 cut(s)	898
SduI	GDGCHC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	731
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	14, 874
SmoI	CTYRAG	2 cut(s)	14, 874
SphI	GCATGC	1 cut(s)	668
SsiI	CCGC	4 cut(s)	71, 192, 270, 837
StyD4I	CCNGG	1 cut(s)	896
StyI	CCWWGG	2 cut(s)	95, 442
TaaI	ACNGT	2 cut(s)	326, 560
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	5 cut(s)	285, 555, 563, 692, 987
TaqII	GACCGA	1 cut(s)	694
TatI	WGTACW	2 cut(s)	527, 606
TauI	GCSGC	2 cut(s)	74, 272
TfiI	GAWTC	2 cut(s)	150, 518
Tru1I	TTAA	6 cut(s)	15, 66, 237, 819, 903, 941
Tru9I	TTAA	6 cut(s)	15, 66, 237, 819, 903, 941
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	141, 212, 242, 329, 411
TspGWI	ACGGA	1 cut(s)	374
Tth111I	GACNNNGTC	1 cut(s)	1007
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	4 cut(s)	164, 296, 413, 777
XceI	RCATGY	5 cut(s)	29, 205, 632, 668, 970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.