Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

52814531 .. 52816206

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTACGGCCCTCAAGGCTGTGTATGTCTCGGACGTTCCCACTGTCGACCAAGTCTCGGAAATTAATGCTGCATTGGCCCTAATCAAAGCTCCATGGTCAGCACGAGGTGTGAATGATCGTGATGAAGGCGTAGAAACTAAATGCGGATTCAAATGGCCAAAGTTTGTGGTGATGGGACACAGAGGCAGCGGAATGAACATGTTGCAATCATCTGATGACAGAATGAAATCCATCAAAGAGAACTCAATTCGCTCCTTCAACTCTGCCGCTAAATTCCCTATCGATTACATTGAATTTGATGTTCAAGGTGTTCTGGTTGAGAAAAGAGTTACAGACATTACTTTGCCAGAATTTCTTTCATATGGACCCCAGAAAGAACTTGGAAAGGCAGGAATCCCTATGTTTAGAAAAACCAAAGAGGGGACAATTTTTGAGTGGAAGGTAGAGAAGGATGACCCCCTATGCACATTGCAAGATGTGTTTGAGAAAGTCGACCACTCTATGGGTTTCAATATAGAACTGAAGTTTGATGATCAGTTTGTGTACAATGAGAAACAACACCAACATGTTCTTGAAGTAGTCTTGCAGGTATATTTCCTCACCAATGGAGGGTCCGAAATATACAAAGATGTTAGAAGGAACTCTTTGGAAGAGGCAATTAAGGTGTGTATGGCTGGCGGTTTGCAAGGAGTTGTATCAGAAGCGAGAGCTATCTTGAAAGATCCGAATGCAGTAACCAGGATTAAAGACTCCAACCTTTCCCTTCTAACCTATGGCCAATTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

263

Amino Acids

29.56

Weight (kDa)

5.9

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	61 - 103	2.7e-07	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccI	GTMKAC	2 cut(s)	48, 495
AciI	CCGC	4 cut(s)	147, 192, 270, 681
AclWI	GGATC	1 cut(s)	719
AcoI	YGGCCR	2 cut(s)	158, 778
AcsI	RAATTY	3 cut(s)	275, 296, 353
AcuI	CTGAAG	1 cut(s)	545
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	4 cut(s)	58, 423, 505, 612
AflIII	ACRYGT	2 cut(s)	201, 568
AgsI	TTSAA	7 cut(s)	154, 262, 296, 308, 514, 578, 721
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	2 cut(s)	92, 713
AluI	AGCT	2 cut(s)	92, 713
Alw26I	GTCTC	2 cut(s)	34, 61
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	4 cut(s)	9, 78, 158, 778
ApeKI	GCWGC	2 cut(s)	71, 189
ApoI	RAATTY	3 cut(s)	275, 296, 353
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	4 cut(s)	10, 79, 368, 615
AsuHPI	GGTGA	2 cut(s)	184, 595
AvaII	GGWCC	2 cut(s)	368, 615
BalI	TGGCCA	2 cut(s)	160, 780
BauI	CACGAG	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	58, 201
BccI	CCATC	2 cut(s)	169, 242
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	742
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	34, 61
BfuAI	ACCTGC	1 cut(s)	580
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	72, 190, 270
BlsI	GCNGC	3 cut(s)	73, 191, 271
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	2 cut(s)	368, 615
BmgT120I	GGNCC	4 cut(s)	10, 79, 368, 615
BmiI	GGNNCC	2 cut(s)	370, 616
BmrFI	CCNGG	1 cut(s)	742
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 423, 505, 612
Bse3DI	GCAATG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	742
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	4 cut(s)	58, 423, 505, 612
BseMI	GCAATG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	58, 201
BshFI	GGCC	4 cut(s)	11, 80, 160, 780
BshVI	ATCGAT	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	192, 439
BslI	CCNNNNNNNGG	4 cut(s)	58, 423, 505, 612
BsmAI	GTCTC	2 cut(s)	34, 61
BsmFI	GGGAC	2 cut(s)	192, 439
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	4 cut(s)	11, 80, 160, 780
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	118, 535, 724
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	4 cut(s)	147, 192, 270, 681
BspANI	GGCC	4 cut(s)	11, 80, 160, 780
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	370, 616
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	118, 535, 724
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	648
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	679
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	3 cut(s)	121, 538, 727
BstMAI	GTCTC	2 cut(s)	34, 61
BstMBI	GATC	3 cut(s)	118, 535, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 77
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	2 cut(s)	205, 572
BstSCI	CCNGG	1 cut(s)	740
BstV1I	GCAGC	2 cut(s)	58, 201
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	11, 80, 160, 780
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	679
Cfr13I	GGNCC	4 cut(s)	10, 79, 368, 615
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	547
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	3 cut(s)	96, 202, 569
CviJI	RGCY	9 cut(s)	5, 11, 20, 80, 92, 160, 677, 713, 780
CviKI_1	RGCY	9 cut(s)	5, 11, 20, 80, 92, 160, 677, 713, 780
CviQI	GTAC	1 cut(s)	547
DpnI	GATC	3 cut(s)	120, 537, 726
DpnII	GATC	3 cut(s)	118, 535, 724
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	158, 778
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	368, 615
Eco57I	CTGAAG	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	740
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	3 cut(s)	99, 205, 572
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FaqI	GGGAC	2 cut(s)	192, 439
FatI	CATG	3 cut(s)	95, 201, 568
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	2 cut(s)	48, 495
Fnu4HI	GCNGC	3 cut(s)	72, 190, 270
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	72, 190, 270
GluI	GCNGC	3 cut(s)	72, 190, 270
HaeIII	GGCC	4 cut(s)	11, 80, 160, 780
Hin1II	CATG	3 cut(s)	99, 205, 572
HincII	GTYRAC	2 cut(s)	49, 496
HindII	GTYRAC	2 cut(s)	49, 496
HinfI	GANTC	3 cut(s)	150, 396, 752
HphI	GGTGA	2 cut(s)	184, 595
Hpy166II	GTNNAC	3 cut(s)	49, 496, 547
Hpy188I	TCNGA	6 cut(s)	34, 61, 217, 619, 703, 729
Hpy188III	TCNNGA	3 cut(s)	122, 575, 718
Hpy8I	GTNNAC	3 cut(s)	49, 496, 547
HpyAV	CCTTC	6 cut(s)	122, 268, 436, 445, 633, 776
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	7 cut(s)	74, 208, 468, 475, 589, 688, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 77
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	99, 205, 572
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	118, 535, 724
LmnI	GCTCC	2 cut(s)	97, 260
LpnPI	CCDG	8 cut(s)	302, 363, 378, 386, 575, 663, 727, 754
Lsp1109I	GCAGC	2 cut(s)	58, 201
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	331, 736
MalI	GATC	3 cut(s)	120, 537, 726
MboI	GATC	3 cut(s)	118, 535, 724
MboII	GAAGA	1 cut(s)	665
MflI	RGATCY	1 cut(s)	724
MlsI	TGGCCA	2 cut(s)	160, 780
MluCI	AATT	8 cut(s)	63, 249, 275, 296, 353, 429, 660, 782
MluNI	TGGCCA	2 cut(s)	160, 780
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	7 cut(s)	23, 101, 179, 415, 605, 611, 649
Mox20I	TGGCCA	2 cut(s)	160, 780
MscI	TGGCCA	2 cut(s)	160, 780
MseI	TTAA	4 cut(s)	66, 663, 747, 785
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	2 cut(s)	160, 780
MspA1I	CMGCKG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	2 cut(s)	17, 77
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	3 cut(s)	118, 535, 724
NlaIII	CATG	3 cut(s)	99, 205, 572
NlaIV	GGNNCC	2 cut(s)	370, 616
NspI	RCATGY	2 cut(s)	205, 572
PciI	ACATGT	2 cut(s)	201, 568
PctI	GAATGC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	150, 396
PflFI	GACNNNGTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	73, 191, 271
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
PscI	ACATGT	2 cut(s)	201, 568
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	370, 616
PspPI	GGNCC	4 cut(s)	10, 79, 368, 615
PsuI	RGATCY	1 cut(s)	724
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	567
SalI	GTCGAC	2 cut(s)	47, 494
SaqAI	TTAA	4 cut(s)	66, 663, 747, 785
SatI	GCNGC	3 cut(s)	72, 190, 270
Sau3AI	GATC	3 cut(s)	118, 535, 724
Sau96I	GGNCC	4 cut(s)	10, 79, 368, 615
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	1 cut(s)	742
SinI	GGWCC	2 cut(s)	368, 615
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	8 cut(s)	63, 249, 275, 296, 353, 429, 660, 782
SsiI	CCGC	4 cut(s)	147, 192, 270, 681
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	48, 285, 495
TasI	AATT	8 cut(s)	63, 249, 275, 296, 353, 429, 660, 782
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	150, 396
Tru1I	TTAA	4 cut(s)	66, 663, 747, 785
Tru9I	TTAA	4 cut(s)	66, 663, 747, 785
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	71, 189
TspDTI	ATGAA	4 cut(s)	141, 212, 242, 351
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	368, 615
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	3 cut(s)	275, 296, 353
XceI	RCATGY	2 cut(s)	205, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	48, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.