Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

10519477 .. 10520157

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0129700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTGTCTCCAATTCCAGTAGCTCTTTGCTAGCTTTGGTGATTCTTCTAGTTGCTTGTGCATCAGAGAAGTCTTTAGCTGTTGAAGCTAGGCCACTTTCCCTCTTTTCACAACAAGGATATTCAAAGGTATTTGGAACCCTTGGGATAGCTTGTGAGTGTTGTGATGGAGTTGGAGGTGAATGCAAAAGTAGGTGGACTGGTTCTTGCAGTAGCCTCAAATGTCTTCCTTGGAAGCAACATAATTTGAAACTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

86

Amino Acids

9.07

Weight (kDa)

8.54

Isoelectric Point (pI)

64.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	86, 126, 250
AluBI	AGCT	5 cut(s)	24, 35, 80, 89, 152
AluI	AGCT	5 cut(s)	24, 35, 80, 89, 152
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	52, 191
AsuNHI	GCTAGC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	218
BccI	CCATC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	32, 50, 90
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	71
BmtI	GCTAGC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	142, 230
Bse1I	ACTGG	2 cut(s)	18, 205
BseDI	CCNNGG	2 cut(s)	142, 230
BseNI	ACTGG	2 cut(s)	18, 205
BshFI	GGCC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	139
BspOI	GCTAGC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	18, 205
BssECI	CCNNGG	2 cut(s)	142, 230
BssT1I	CCWWGG	2 cut(s)	142, 230
BstC8I	GCNNGC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	33
CviJI	RGCY	7 cut(s)	24, 35, 80, 89, 94, 152, 216
CviKI_1	RGCY	7 cut(s)	24, 35, 80, 89, 94, 152, 216
Eco130I	CCWWGG	2 cut(s)	142, 230
EcoT14I	CCWWGG	2 cut(s)	142, 230
ErhI	CCWWGG	2 cut(s)	142, 230
FaiI	YATR	1 cut(s)	243
FspBI	CTAG	3 cut(s)	32, 50, 90
HaeIII	GGCC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	2 cut(s)	52, 191
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	62, 186, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
LpnPI	CCDG	2 cut(s)	31, 186
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	32, 50, 90
MboII	GAAGA	2 cut(s)	38, 218
MluCI	AATT	3 cut(s)	13, 244, 256
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	113, 170, 227
MseI	TTAA	1 cut(s)	259
Mva1269I	GAATGC	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	86
NheI	GCTAGC	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	259
SetI	ASST	8 cut(s)	26, 37, 82, 91, 132, 154, 181, 197
SfaNI	GCATC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	13, 244, 256
SspMI	CTAG	3 cut(s)	32, 50, 90
StyI	CCWWGG	2 cut(s)	142, 230
TasI	AATT	3 cut(s)	13, 244, 256
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
XspI	CTAG	3 cut(s)	32, 50, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.