Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

64439516 .. 64440726

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTGCAGTCCTCTGATATCAGAATGAGAGGAATCAAAGAGAACTCAATCTTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTCGACGTTCAGGTGACCAAAGATGACTGTCCAGTAATTTTCCATGACAACTTTATTGTCAGCGAGGACAAGGATGTTTTCATTGAGAAGAGAGTTACAGACCTTAAGCTACCAAAATTTCTTTCCTATGGACCCCAGAAACAGCTTGGAGAGTTTGATGATCATCACATAGTCTACAAAGAGAGACAGCTCAAGCATGTTCTTCAAGTAATCTTGCAGGTGGTAAATGAGTATGCAAAGGGCAAACCAATCTTCTTTTCAACCTTTCAGCCTGATGCTGCTCTTTTGATAAGAAAAATGGAGAGCAGTTACCCTGTAAGAGGGTCTCAAATGTATGATGATGTTAGAAAGAACTCTTTGGAAGAAGCAGTTACGATGTGCATGGCAGGTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

164

Amino Acids

18.93

Weight (kDa)

5.56

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	13 - 72	1.8e-14	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	304, 473
Acc36I	ACCTGC	2 cut(s)	304, 473
AccI	GTMKAC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	416
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	61, 302, 357
AjuI	GAANNNNNNNTTGG	4 cut(s)	202, 234, 337, 369
AluBI	AGCT	3 cut(s)	205, 241, 286
AluI	AGCT	3 cut(s)	205, 241, 286
Alw26I	GTCTC	2 cut(s)	274, 426
ApeKI	GCWGC	2 cut(s)	68, 374
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	55, 361
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	274, 426
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	2 cut(s)	304, 473
BisI	GCNGC	2 cut(s)	69, 375
BlsI	GCNGC	2 cut(s)	70, 376
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	258
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	55, 361
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	274, 426
Bso31I	GGTCTC	1 cut(s)	426
Bsp143I	GATC	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	2 cut(s)	304, 473
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	200
BstEII	GGTNACC	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	2 cut(s)	274, 426
BstMBI	GATC	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	55, 361
BtsCI	GGATG	1 cut(s)	175
BveI	ACCTGC	2 cut(s)	304, 473
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	3 cut(s)	140, 293, 478
CviJI	RGCY	4 cut(s)	205, 241, 286, 367
CviKI_1	RGCY	4 cut(s)	205, 241, 286, 367
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoO65I	GGTNACC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	3 cut(s)	143, 296, 481
FaiI	YATR	7 cut(s)	141, 225, 266, 294, 330, 432, 479
FatI	CATG	3 cut(s)	139, 292, 477
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	69, 375
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	69, 375
GluI	GCNGC	2 cut(s)	69, 375
Hin1II	CATG	3 cut(s)	143, 296, 481
HinfI	GANTC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	16, 23
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	7, 313, 332, 477
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	143, 296, 481
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	7 cut(s)	92, 141, 245, 299, 381, 423, 468
Lsp1109I	GCAGC	2 cut(s)	55, 361
LweI	GCATC	1 cut(s)	361
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	109, 190, 404, 466
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	43, 196, 290, 340, 470
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	4 cut(s)	74, 81, 132, 212
MnlI	CCTC	4 cut(s)	22, 23, 154, 410
MseI	TTAA	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	81
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	143, 296, 481
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	296
PaqCI	CACCTGC	2 cut(s)	304, 473
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	70, 376
PspEI	GGTNACC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	2 cut(s)	69, 375
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	227
SetI	ASST	9 cut(s)	105, 111, 201, 207, 243, 288, 318, 362, 487
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	200, 287
SmoI	CTYRAG	2 cut(s)	200, 287
Sse9I	AATT	4 cut(s)	74, 81, 132, 212
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	74, 81, 132, 212
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	68, 374
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.