Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

66510107 .. 66511398

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG418100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGCAGTCCTCTGATATCAGAATGAGAGGAATCAAAGAGAACTCAATCTTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTCGACGTTCAGGTGGCCAAAGATGACTGTCCAGTAATTTTCCATGACAACTTTATCGTCAGTGAGGACAAGGATGTTTTCATTGAGAAGAGAGTTACAGACCTTAAGCTACCAAAATTTCTTTCCTATGGACCCCAGAAACAGCTTGGAGAGGTCATCATCAATGTTGATTTGTTCGTTTTCATATTGATAATTTTTGTATCTGTGGATTTTTTGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

106

Amino Acids

12.31

Weight (kDa)

4.54

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	13 - 53	1.9e-13	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	212
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	2 cut(s)	205, 241
AluI	AGCT	2 cut(s)	205, 241
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	113, 205, 241
CviKI_1	RGCY	3 cut(s)	113, 205, 241
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	1 cut(s)	143
FaiI	YATR	3 cut(s)	141, 225, 281
FatI	CATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	16, 23
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	7
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	92, 141, 245
Lsp1109I	GCAGC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	43, 196
MfeI	CAATTG	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	6 cut(s)	74, 81, 132, 212, 288, 316
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	4 cut(s)	22, 23, 154, 241
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	81
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	227
SetI	ASST	6 cut(s)	105, 111, 201, 207, 243, 252
SgeI	CNNG	6 cut(s)	119, 140, 152, 178, 244, 254
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	6 cut(s)	74, 81, 132, 212, 288, 316
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	74, 81, 132, 212, 288, 316
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	166, 268
TspRI	CASTG	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.