Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015972

Physical Location & Seq

Genomic Coordinates Forward (+)

7324879 .. 7325951

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGATCTACAAATCCCTAGAAATCTTTCAGAAAAACCCCAAATCCTCCGTCTTCTACCTCCACCTCAACCGCCCCAGCCACCGCAACGCCCTCTCGCGCGACTTTTTCACCGAATTCCCTGAGGCCCTCTCTTCCCTCGACCAAAACCCTAACGTCAACGTCATCGTCCTCAGCGGCACCGGTGACCACTTCTGCGCCGGAATCGACCTGAAAACGCTTACATCGATCTCCGAAAAGTTCGTCTCCGTAGACCGAGGCCGCGTCGGGGAGCAGTTTCGGCGGGAGATCAAGTGGTTGCAGGACGCGATCACGGCGATTGAGCGGTGCCGGAAGCCGGTGATTGCGTCCATCCACGGAGCGTGTATCGGCGGTGGTATCGATATCGTGACCGCCTGCGACATAAGGTATTGCAGCAAGGACGCGTTCTTTTCGGTCAAAGAGGTCGACTTGGCGATCACGGCGGACCTCGGGACGCTTCAGAGGCTGCCGGGAATTGTCGGGTACGGAAACGCGATTGAACTGGCGCTTACGGGTCGGAGGTTCTCGGGTCCGGAGGCTAAGCAGCTGGGCCTGGTTTCTGGAGTGTTCGACTCCAGGGACGAGTTGGAAAACGGTGTACGCCTCATCGCTGAGGGAATTGGATTGAAATCTCCACTGGCTGTGACCGGGACGAAAGCGGTATTGCAAAGAAGTAGGGAGCTGAATGTGGAGCAAGGATTGGATTATGTTGCAACATGGAATTCGGCAATGCTGTTATCTGATGATTTAACGGAGGCTGTCTCAGCATCTGCCCAGAAAAGAAAGCCCATCTTTGCCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0051750 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

ECH_1

Protein Analysis

276

Amino Acids

30.06

Weight (kDa)

7.63

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43280
fragaria_vesca	FvH4_4g23150
malus_domestica	MD13G1124500.v1.1
prunus_persica	Prupe.1G220600_v2.0.a1
pyrus_communis	pycom13g10880
rosa_chinensis	RchiOBHm_Chr4g0429491
rosa_laevigata	RLG00000007066
rosa_multiflora	Rmu_sc0003708.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371190
rosa_rugosa	Rorug04G0236400
rosa_samantha	Rh4AG292100 Rh4BG297900 Rh4CG313400 Rh4DG295000
rosa_wichuraiana	Rw4G025300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 327
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	252, 447
AccII	CGCG	6 cut(s)	100, 102, 264, 308, 425, 515
AccIII	TCCGGA	1 cut(s)	553
AcsI	RAATTY	2 cut(s)	116, 742
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	506, 621
AfiI	CCNNNNNNNGG	2 cut(s)	268, 337
AflIII	ACRYGT	1 cut(s)	423
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	521, 649
AjnI	CCWGG	2 cut(s)	573, 596
AluBI	AGCT	3 cut(s)	568, 703, 823
AluI	AGCT	3 cut(s)	568, 703, 823
Alw26I	GTCTC	2 cut(s)	250, 787
AlwNI	CAGNNNCTG	2 cut(s)	487, 791
Ama87I	CYCGRG	2 cut(s)	470, 547
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	3 cut(s)	126, 259, 571
ApeKI	GCWGC	3 cut(s)	414, 487, 565
ApoI	RAATTY	2 cut(s)	116, 742
ArsI	GACNNNNNNTTYG	4 cut(s)	36, 68, 228, 260
AsiGI	ACCGGT	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	3 cut(s)	102, 200, 529
AspS9I	GGNCC	4 cut(s)	127, 466, 551, 571
AsuC2I	CCSGG	2 cut(s)	492, 670
AsuHPI	GGTGA	3 cut(s)	103, 197, 352
AvaI	CYCGRG	2 cut(s)	470, 547
AvaII	GGWCC	2 cut(s)	466, 551
AxyI	CCTNAGG	1 cut(s)	123
BanI	GGYRCC	2 cut(s)	179, 327
BbsI	GAAGAC	1 cut(s)	46
BbvCI	CCTCAGC	2 cut(s)	173, 633
BbvI	GCAGC	3 cut(s)	426, 474, 577
BccI	CCATC	2 cut(s)	359, 818
BceAI	ACGGC	2 cut(s)	330, 477
BciT130I	CCWGG	2 cut(s)	575, 598
BcnI	CCSGG	2 cut(s)	492, 670
BcoDI	GTCTC	2 cut(s)	250, 787
BfaI	CTAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	530
BisI	GCNGC	5 cut(s)	178, 262, 415, 488, 566
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	5 cut(s)	179, 263, 416, 489, 567
Bme1390I	CCNGG	4 cut(s)	492, 575, 598, 670
Bme18I	GGWCC	2 cut(s)	466, 551
BmeT110I	CYCGRG	2 cut(s)	470, 547
BmgT120I	GGNCC	4 cut(s)	127, 466, 551, 571
BmiI	GGNNCC	3 cut(s)	181, 329, 552
BmrFI	CCNGG	4 cut(s)	492, 575, 598, 670
BmsI	GCATC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	46
BplI	GAGNNNNNCTC	4 cut(s)	116, 148, 767, 799
BpmI	CTGGAG	2 cut(s)	580, 603
Bpu10I	CCTNAGC	2 cut(s)	173, 633
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuMI	CCSGG	2 cut(s)	492, 670
Bsa29I	ATCGAT	2 cut(s)	227, 381
BsaBI	GATNNNNATC	1 cut(s)	649
BsaJI	CCNNGG	4 cut(s)	256, 355, 469, 597
BsaWI	WCCGGW	2 cut(s)	182, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 337
Bse118I	RCCGGY	2 cut(s)	182, 337
Bse1I	ACTGG	2 cut(s)	528, 663
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	649
BseAI	TCCGGA	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	575, 598
BseCI	ATCGAT	2 cut(s)	227, 381
BseDI	CCNNGG	4 cut(s)	256, 355, 469, 597
BseGI	GGATG	1 cut(s)	351
BseJI	GATNNNNATC	1 cut(s)	649
BseLI	CCNNNNNNNGG	2 cut(s)	268, 337
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	4 cut(s)	114, 187, 624, 798
BseNI	ACTGG	2 cut(s)	528, 663
BseXI	GCAGC	3 cut(s)	426, 474, 577
BseYI	CCCAGC	2 cut(s)	77, 568
Bsh1236I	CGCG	6 cut(s)	100, 102, 264, 308, 425, 515
BshFI	GGCC	3 cut(s)	128, 261, 573
BshNI	GGYRCC	2 cut(s)	179, 327
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	227, 381
BsiHKCI	CYCGRG	2 cut(s)	470, 547
BsiSI	CCGG	7 cut(s)	183, 201, 331, 338, 491, 554, 669
BslFI	GGGAC	3 cut(s)	487, 614, 685
BslI	CCNNNNNNNGG	2 cut(s)	268, 337
BsmAI	GTCTC	2 cut(s)	250, 787
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	3 cut(s)	487, 614, 685
BsnI	GGCC	3 cut(s)	128, 261, 573
BsoBI	CYCGRG	2 cut(s)	470, 547
Bsp13I	TCCGGA	1 cut(s)	553
Bsp143I	GATC	5 cut(s)	6, 228, 288, 309, 456
Bsp1720I	GCTNAGC	1 cut(s)	561
BspANI	GGCC	3 cut(s)	128, 261, 573
BspCNI	CTCAG	4 cut(s)	115, 186, 625, 797
BspDI	ATCGAT	2 cut(s)	227, 381
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	6 cut(s)	100, 102, 264, 308, 425, 515
BspLI	GGNNCC	3 cut(s)	181, 329, 552
BspT107I	GGYRCC	2 cut(s)	179, 327
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	2 cut(s)	182, 337
BsrI	ACTGG	2 cut(s)	528, 663
BssAI	RCCGGY	2 cut(s)	182, 337
BssECI	CCNNGG	4 cut(s)	256, 355, 469, 597
BssMI	GATC	5 cut(s)	6, 228, 288, 309, 456
Bst2UI	CCWGG	2 cut(s)	575, 598
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	5 cut(s)	123, 173, 561, 633, 784
BstDSI	CCRYGG	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	6 cut(s)	100, 102, 264, 308, 425, 515
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	3 cut(s)	102, 200, 529
BstKTI	GATC	5 cut(s)	9, 231, 291, 312, 459
BstMAI	GTCTC	2 cut(s)	250, 787
BstMBI	GATC	5 cut(s)	6, 228, 288, 309, 456
BstMWI	GCNNNNNNNGC	5 cut(s)	280, 314, 461, 484, 785
BstNI	CCWGG	2 cut(s)	575, 598
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	4 cut(s)	490, 573, 596, 668
BstUI	CGCG	6 cut(s)	100, 102, 264, 308, 425, 515
BstV1I	GCAGC	3 cut(s)	426, 474, 577
BstV2I	GAAGAC	1 cut(s)	46
Bsu15I	ATCGAT	2 cut(s)	227, 381
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	128, 261, 573
BsuTUI	ATCGAT	2 cut(s)	227, 381
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	397
CaiI	CAGNNNCTG	2 cut(s)	487, 791
CfoI	GCGC	3 cut(s)	102, 200, 529
Cfr10I	RCCGGY	2 cut(s)	182, 337
Cfr13I	GGNCC	4 cut(s)	127, 466, 551, 571
ClaI	ATCGAT	2 cut(s)	227, 381
CseI	GACGC	5 cut(s)	253, 314, 336, 431, 484
Csp6I	GTAC	2 cut(s)	505, 620
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	1 cut(s)	738
CviQI	GTAC	2 cut(s)	505, 620
DdeI	CTNAG	5 cut(s)	123, 173, 561, 633, 784
DpnI	GATC	5 cut(s)	8, 230, 290, 311, 458
DpnII	GATC	5 cut(s)	6, 228, 288, 309, 456
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	466, 551
Eco57I	CTGAAG	1 cut(s)	464
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	470, 547
Eco91I	GGTNACC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	185
EcoRI	GAATTC	2 cut(s)	116, 742
EcoRII	CCWGG	2 cut(s)	573, 596
EcoRV	GATATC	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	741
FaiI	YATR	3 cut(s)	404, 729, 739
FalI	AAGNNNNNCTT	1 cut(s)	797
FaqI	GGGAC	3 cut(s)	487, 614, 685
FatI	CATG	1 cut(s)	737
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	252, 447
Fnu4HI	GCNGC	5 cut(s)	178, 262, 415, 488, 566
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	5 cut(s)	178, 262, 415, 488, 566
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	3 cut(s)	101, 199, 528
GluI	GCNGC	5 cut(s)	178, 262, 415, 488, 566
GsaI	CCCAGC	2 cut(s)	81, 572
GsuI	CTGGAG	2 cut(s)	580, 603
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	3 cut(s)	128, 261, 573
HapII	CCGG	7 cut(s)	183, 201, 331, 338, 491, 554, 669
HgaI	GACGC	5 cut(s)	253, 314, 336, 431, 484
HhaI	GCGC	3 cut(s)	102, 200, 529
Hin1II	CATG	1 cut(s)	741
Hin6I	GCGC	3 cut(s)	100, 198, 527
HinP1I	GCGC	3 cut(s)	100, 198, 527
HincII	GTYRAC	2 cut(s)	160, 448
HindII	GTYRAC	2 cut(s)	160, 448
HinfI	GANTC	2 cut(s)	204, 593
HpaII	CCGG	7 cut(s)	183, 201, 331, 338, 491, 554, 669
HphI	GGTGA	3 cut(s)	103, 197, 352
Hpy166II	GTNNAC	4 cut(s)	160, 253, 448, 620
Hpy188I	TCNGA	5 cut(s)	33, 235, 483, 540, 763
Hpy188III	TCNNGA	4 cut(s)	388, 472, 554, 582
Hpy8I	GTNNAC	4 cut(s)	160, 253, 448, 620
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	2 cut(s)	156, 162
HpyCH4V	TGCA	4 cut(s)	301, 414, 688, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	280, 314, 461, 484, 785
HpyF3I	CTNAG	5 cut(s)	123, 173, 561, 633, 784
HpySE526I	ACGT	2 cut(s)	156, 162
Hsp92II	CATG	1 cut(s)	741
HspAI	GCGC	3 cut(s)	100, 198, 527
Kpn2I	TCCGGA	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	6, 228, 288, 309, 456
LmnI	GCTCC	4 cut(s)	271, 359, 700, 712
Lsp1109I	GCAGC	3 cut(s)	426, 474, 577
LweI	GCATC	1 cut(s)	797
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	156, 162
MaeIII	GTNAC	3 cut(s)	185, 388, 664
MalI	GATC	5 cut(s)	8, 230, 290, 311, 458
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	5 cut(s)	6, 228, 288, 309, 456
MboII	GAAGA	2 cut(s)	46, 126
MluCI	AATT	4 cut(s)	116, 495, 639, 742
MluI	ACGCGT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	2 cut(s)	518, 588
MroI	TCCGGA	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	770
MspA1I	CMGCKG	2 cut(s)	177, 568
MspI	CCGG	7 cut(s)	183, 201, 331, 338, 491, 554, 669
MspR9I	CCNGG	4 cut(s)	492, 575, 598, 670
MvaI	CCWGG	2 cut(s)	575, 598
MvnI	CGCG	6 cut(s)	100, 102, 264, 308, 425, 515
MwoI	GCNNNNNNNGC	5 cut(s)	280, 314, 461, 484, 785
NciI	CCSGG	2 cut(s)	492, 670
NdeII	GATC	5 cut(s)	6, 228, 288, 309, 456
NlaIII	CATG	1 cut(s)	741
NlaIV	GGNNCC	3 cut(s)	181, 329, 552
NmuCI	GTSAC	3 cut(s)	185, 388, 664
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	204
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	179, 263, 416, 489, 567
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	573, 596
PspEI	GGTNACC	1 cut(s)	185
PspFI	CCCAGC	2 cut(s)	77, 568
PspGI	CCWGG	2 cut(s)	573, 596
PspN4I	GGNNCC	3 cut(s)	181, 329, 552
PspPI	GGNCC	4 cut(s)	127, 466, 551, 571
PstNI	CAGNNNCTG	2 cut(s)	487, 791
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	506, 621
RsaNI	GTAC	2 cut(s)	505, 620
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	770
SatI	GCNGC	5 cut(s)	178, 262, 415, 488, 566
Sau3AI	GATC	5 cut(s)	6, 228, 288, 309, 456
Sau96I	GGNCC	4 cut(s)	127, 466, 551, 571
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	4 cut(s)	492, 575, 598, 670
SfaNI	GCATC	1 cut(s)	797
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	2 cut(s)	466, 551
Sse9I	AATT	4 cut(s)	116, 495, 639, 742
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	490, 573, 596, 668
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	2 cut(s)	159, 165
TaqI	TCGA	6 cut(s)	141, 207, 227, 381, 447, 591
TaqII	GACCGA	2 cut(s)	270, 424
TasI	AATT	4 cut(s)	116, 495, 639, 742
TauI	GCSGC	2 cut(s)	180, 264
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	770
Tru9I	TTAA	1 cut(s)	770
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	3 cut(s)	185, 388, 664
TseI	GCWGC	3 cut(s)	414, 487, 565
Tsp45I	GTSAC	3 cut(s)	185, 388, 664
TspGWI	ACGGA	5 cut(s)	40, 238, 372, 522, 788
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	466, 551
XapI	RAATTY	2 cut(s)	116, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmiI	GTMKAC	2 cut(s)	252, 447
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.