Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009949

Physical Location & Seq

Genomic Coordinates Reverse (-)

24107327 .. 24112646

Gene Structure 5320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATGATGATGATGAGGGGGAATGACGCCAATTGCAATGGATGCGAAATTCATGGTCAAAATCTTGGAGGATTAGATTCATTTGACAAGAGCAGCAGAGGCATTTGCTCAGTGCAGATTGAGTATGATCGAAACGGTCAATTCATTTGGTCCGTTAAGCATGGCAGCAATGGAGGAACTACCCCACATCGAATTAAATTGGAGTATCCTCATGAAGTGCTGACTTGTATATCTGGGTATTATGGTTGCATTAGTAAAAACGAGCGACCTCAAATTATAAAGTCTTTGACATTTTATACCAGCAGAGGCAAGTATGGTCCATTTGGGGAAGAAGTTGGGACATTTTTCACTTCAACTACCACAGAGGGCAAGGTGGTGTGCTTGCATGGCAGGAGCAGCTTCTATTTGGATGCCTTTGGAGTTCATATGCAACATTGGCTGGGAAGTGGCCAGAAAACCTCCAAGATCTCTCTCTTCAAGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

163

Amino Acids

18.13

Weight (kDa)

8.91

Isoelectric Point (pI)

23.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19715 AT1G19715 AT1G19715
fragaria_vesca	FvH4_2g39220
malus_domestica	MD08G1023700.v1.1 MD15G1021200.v1.1
prunus_persica	Prupe.1G227800_v2.0.a1 Prupe.1G372900_v2.0.a1 Prupe.1G372900_v2.0.a1
pyrus_communis	pycom08g01850 pycom15g01750
rosa_chinensis	RchiOBHm_Chr6g0301821
rosa_laevigata	RLG00000011217
rosa_multiflora	Rmu_sc0000407.1_g000013
rosa_roxburghii	Rroxscaffold_7G00166370
rosa_rugosa	Rorug06G0310100
rosa_samantha	Rh6AG421800 Rh6BG428500 Rh6CG435100 Rh6DG421900
rosa_wichuraiana	Rw6G036530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	48, 482
AcyI	GRCGYC	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	354, 478
AluBI	AGCT	1 cut(s)	399
AluI	AGCT	1 cut(s)	399
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	93, 165, 396
ApoI	RAATTY	2 cut(s)	48, 482
AspS9I	GGNCC	2 cut(s)	150, 317
AvaII	GGWCC	2 cut(s)	150, 317
BalI	TGGCCA	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	105, 177, 408
BciVI	GTATCC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	3 cut(s)	94, 166, 397
BlsI	GCNGC	3 cut(s)	95, 167, 398
Bme18I	GGWCC	2 cut(s)	150, 317
BmgT120I	GGNCC	2 cut(s)	150, 317
BmsI	GCATC	2 cut(s)	32, 400
BsaHI	GRCGYC	1 cut(s)	27
Bse3DI	GCAATG	2 cut(s)	43, 175
BseGI	GGATG	2 cut(s)	47, 415
BseMI	GCAATG	2 cut(s)	43, 175
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	105, 177, 408
BseYI	CCCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	127, 465
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	43, 175
BssMI	GATC	2 cut(s)	127, 465
BssNI	GRCGYC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	479
BstACI	GRCGYC	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	47, 415
BstKTI	GATC	2 cut(s)	130, 468
BstMBI	GATC	2 cut(s)	127, 465
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 99, 387, 396, 436
BstV1I	GCAGC	3 cut(s)	105, 177, 408
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	47, 415
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	383
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	150, 317
CseI	GACGC	1 cut(s)	35
CviAII	CATG	4 cut(s)	53, 161, 212, 386
CviJI	RGCY	3 cut(s)	399, 439, 450
CviKI_1	RGCY	3 cut(s)	399, 439, 450
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	2 cut(s)	129, 467
DpnII	GATC	2 cut(s)	127, 465
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	150, 317
FaeI	CATG	4 cut(s)	56, 164, 215, 389
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	4 cut(s)	52, 160, 211, 385
FauNDI	CATATG	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	94, 166, 397
FokI	GGATG	2 cut(s)	54, 422
Fsp4HI	GCNGC	3 cut(s)	94, 166, 397
GluI	GCNGC	3 cut(s)	94, 166, 397
GsaI	CCCAGC	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	450
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	56, 164, 215, 389
HinfI	GANTC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	488
Hpy188III	TCNNGA	2 cut(s)	212, 478
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	36, 115, 249, 385, 430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 99, 387, 396, 436
HpyF3I	CTNAG	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	56, 164, 215, 389
Kzo9I	GATC	2 cut(s)	127, 465
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	5 cut(s)	219, 313, 376, 425, 464
Lsp1109I	GCAGC	3 cut(s)	105, 177, 408
LweI	GCATC	2 cut(s)	32, 400
MalI	GATC	2 cut(s)	129, 467
MboI	GATC	2 cut(s)	127, 465
MboII	GAAGA	2 cut(s)	341, 466
MfeI	CAATTG	1 cut(s)	31
MflI	RGATCY	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	7 cut(s)	31, 48, 140, 192, 197, 273, 482
MluNI	TGGCCA	1 cut(s)	450
MnlI	CCTC	9 cut(s)	9, 62, 92, 167, 219, 279, 299, 358, 469
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	2 cut(s)	156, 195
Msp20I	TGGCCA	1 cut(s)	450
MunI	CAATTG	1 cut(s)	31
MwoI	GCNNNNNNNGC	5 cut(s)	42, 99, 387, 396, 436
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	2 cut(s)	127, 465
NlaIII	CATG	4 cut(s)	56, 164, 215, 389
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	95, 167, 398
PsiI	TTATAA	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	150, 317
PsuI	RGATCY	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	156, 195
SatI	GCNGC	3 cut(s)	94, 166, 397
Sau3AI	GATC	2 cut(s)	127, 465
Sau96I	GGNCC	2 cut(s)	150, 317
SetI	ASST	4 cut(s)	271, 375, 401, 461
SfaNI	GCATC	2 cut(s)	32, 400
SinI	GGWCC	2 cut(s)	150, 317
Sse9I	AATT	7 cut(s)	31, 48, 140, 192, 197, 273, 482
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	130, 190
TasI	AATT	7 cut(s)	31, 48, 140, 192, 197, 273, 482
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	156, 195
Tru9I	TTAA	2 cut(s)	156, 195
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	3 cut(s)	93, 165, 396
TspDTI	ATGAA	5 cut(s)	41, 69, 133, 228, 413
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	150, 317
XapI	RAATTY	2 cut(s)	48, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.