Rorug06G0310100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008721
Physical Location & Seq
Forward (+)
46142317 .. 46146516
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0310100.1

Sequence Viewer

Length: 1659 bp
ATGGAAATGGCCAAGCATTCAGTGAAGCGTCTCCTCTGCAATTCACATTTCACGCAAAGCTTGATGAAGCGAGAGGAATCATACCGGAGGTTGATATATAGCTTCGTGAATCGGTTTCAATCGCAACGGTCGACAGCAGACAAGGTGAATTCAGAGGCACTCAAGGAATCAAATGTTGCTGTTCATCCTCATCAAGCTTCTCTGAGGCTTAGAAAGGATGGCATTGGTAGTTATAGTAGTGGGGATGATGATTTGAGCGAGAATAAGGAGAAAAGATTAGAGCTTTCATGGTTTCCCAAAGCGCTTGAGCCAGCTCTGCAGCTGTGCAGGTGGGCTCTGACAGGCCCAACAGGGAACGGGGTTGGAAACAAACCCCCACCAAGTACTCGATCTGTCTCGGAGATCATTGCAAGCATCCAACGCAGTAAGACAGGCATTCAAGATTGGAGTTTGAGTGATCTCACTGTGGGTTTGTTTCTTATTTATCTTCGTCAAGCGTCTGTAAATCCATTTGAGGATGTTACTGGCATTCAGGTCTCATCAGATAGATTGGTACATGACCTTATTTACCACGTTGAGTTGGCAAAAGGTTGTTATAAGGACAATGCTGCAGCTCTCGCAAGGAACTGCATGCTTCGAGAAAGCAATGTCTTGAAGTTTGTCAAATATTCTAGTGTCATGAGGCCGGGTTATTATATAGGGATTGATACTCGTAGAAAACTTGTGATTCTAGGAATCCGTGGAACTCATACTGTGTATGACCTTATTACTGATGTTGTTTCTTCAAGTGACGGTGAAGTCACTCTTGAAGGGTTTTCAACCCACTTTGGCACTGCAGAAGCTGCTCGTTGGTTTCTTACTCACGAAATGGGAAATATAAGGAAGTGCTTGGAGAAGTATGAGGGATTTAAGTTAAGGCTTGTGGGTCATTCTCTTGGAGGTGCTACAGCTGCTCTACTAGCAATAATGCTCCGGAAAAAGTCGTATAAGGAGCTAGGGTTTAGCCCAGAGATTGTTTCTGCTGTCGGATATGCAGCGCCACCTTGTGTCTCCAAAGAACTTGCTGAAAGCTGCTCCAGTTATGTCAGAACTGTTGTGATGCAGGATGATATTATACCTAGACTTAGTGTAGCATCTCTTATGAGGTTGAGGAATGAAATTCTTCAAACTGATTGGATGAGTGTGATTGAGAAGGAAGACTGGAGAAGTGTAATAGATTTGGTGACAAATGCAAAACAGGTTGTATCTTCAGTGCAAGATGTTGCGGCAAAACTTGCTGATTATGCAAAATTCAGGAGCAATAAAGATTCCCCTGATGATCCGATGATAAAGAAGGTGGCTGCTGCGGCTGCTGCTTCCAGAGTCCCTTTAAATGACAAAACTGTAAGAGATAATGCTGTTGGTAGTCCAAATGCTGCCAGTAGAGTGCCTGAGGAGTTATTCGTACCAGGTACTGTTTACTATTTAAAGAGGAATGTGGATGCTGATACTAGCGATTATTTTACACTTTGGAAGAGGAATCCGGGTGAACATTTTCAAAGGATTGTGCTTTCAAGCAACTTAATATCGGACCACAAGTGTGATAGCCATTATTATGCATTAAGAGATGTACTCAAAGGTTTGCCCTCCTCCAATGATGAAGGCAATTCTCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

552

Amino Acids

61.56

Weight (kDa)

8.85

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 244 - 377 2.8e-26 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AarI CACCTGC 1 cut(s) 318
AasI GACNNNNNNGTC 1 cut(s) 797
Acc36I ACCTGC 1 cut(s) 318
AccI GTMKAC 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 972
AciI CCGC 2 cut(s) 1265, 1346
AclWI GGATC 1 cut(s) 1313
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 3 cut(s) 148, 1158, 1289
AcuI CTGAAG 1 cut(s) 1233
AdeI CACNNNGTG 1 cut(s) 1046
AfaI GTAC 5 cut(s) 385, 555, 1446, 1453, 1611
AfeI AGCGCT 1 cut(s) 303
AgsI TTSAA 9 cut(s) 119, 440, 655, 786, 809, 819, 1166, 1538, 1554
AjnI CCWGG 1 cut(s) 1447
AleI CACNNNNGTG 1 cut(s) 1578
Alw26I GTCTC 4 cut(s) 35, 400, 541, 1054
AlwI GGATC 1 cut(s) 1313
AlwNI CAGNNNCTG 2 cut(s) 842, 1454
Aor13HI TCCGGA 1 cut(s) 972
Aor51HI AGCGCT 1 cut(s) 303
AoxI GGCC 3 cut(s) 9, 343, 683
ApoI RAATTY 3 cut(s) 148, 1158, 1289
Asp700I GAANNNNTTC 2 cut(s) 1161, 1533
AspLEI GCGC 2 cut(s) 304, 1039
AspS9I GGNCC 2 cut(s) 344, 1570
AsuC2I CCSGG 2 cut(s) 687, 1524
AsuHPI GGTGA 4 cut(s) 157, 806, 1234, 1538
AvaII GGWCC 1 cut(s) 1570
AxyI CCTNAGG 1 cut(s) 1431
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 1203
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 1449
BcnI CCSGG 2 cut(s) 687, 1524
BcoDI GTCTC 4 cut(s) 35, 400, 541, 1054
BfaI CTAG 6 cut(s) 672, 731, 959, 995, 1119, 1491
BfmI CTRYAG 4 cut(s) 317, 609, 834, 945
BfoI RGCGCY 2 cut(s) 305, 1040
BfuAI ACCTGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 385
Bme1390I CCNGG 3 cut(s) 687, 1449, 1524
Bme18I GGWCC 1 cut(s) 1570
BmgT120I GGNCC 2 cut(s) 344, 1570
BmrFI CCNGG 3 cut(s) 687, 1449, 1524
BmsI GCATC 4 cut(s) 423, 1089, 1142, 1471
BpiI GAAGAC 1 cut(s) 1203
BplI GAGNNNNNCTC 2 cut(s) 1596, 1628
BpmI CTGGAG 2 cut(s) 1060, 1222
BpuEI CTTGAG 2 cut(s) 146, 326
BpuMI CCSGG 2 cut(s) 687, 1524
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 739
BsaWI WCCGGW 2 cut(s) 84, 972
BsaXI ACNNNNNCTCC 4 cut(s) 439, 469, 983, 1013
Bse1I ACTGG 4 cut(s) 529, 1077, 1205, 1419
Bse21I CCTNAGG 1 cut(s) 1431
Bse3DI GCAATG 2 cut(s) 405, 652
BseAI TCCGGA 1 cut(s) 972
BseBI CCWGG 1 cut(s) 1449
BseDI CCNNGG 1 cut(s) 739
BseGI GGATG 8 cut(s) 184, 223, 250, 414, 523, 1111, 1182, 1486
BseMI GCAATG 2 cut(s) 405, 652
BseMII CTCAG 2 cut(s) 194, 1422
BseNI ACTGG 4 cut(s) 529, 1077, 1205, 1419
BseRI GAGGAG 3 cut(s) 23, 1448, 1618
BsgI GTGCAG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 3 cut(s) 11, 345, 685
BsiEI CGRYCG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 85, 686, 973, 1523
BslFI GGGAC 1 cut(s) 1349
BsmAI GTCTC 4 cut(s) 35, 400, 541, 1054
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 1349
BsmI GAATGC 3 cut(s) 16, 435, 528
BsnI GGCC 3 cut(s) 11, 345, 685
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 337
Bsp13I TCCGGA 1 cut(s) 972
Bsp143I GATC 4 cut(s) 389, 402, 457, 1318
BspACI CCGC 2 cut(s) 1265, 1346
BspANI GGCC 3 cut(s) 11, 345, 685
BspCNI CTCAG 2 cut(s) 195, 1423
BspEI TCCGGA 1 cut(s) 972
BspHI TCATGA 1 cut(s) 678
BspMAI CTGCAG 3 cut(s) 321, 613, 838
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 1 cut(s) 1313
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 405, 652
BsrI ACTGG 4 cut(s) 529, 1077, 1205, 1419
BssECI CCNNGG 1 cut(s) 739
BssMI GATC 4 cut(s) 389, 402, 457, 1318
Bst2UI CCWGG 1 cut(s) 1449
Bst4CI ACNGT 7 cut(s) 129, 466, 754, 794, 1093, 1384, 1456
Bst6I CTCTTC 1 cut(s) 1508
BstAPI GCANNNNNTGC 2 cut(s) 842, 1274
BstC8I GCNNGC 3 cut(s) 312, 412, 632
BstDEI CTNAG 4 cut(s) 203, 209, 1124, 1431
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 8 cut(s) 184, 223, 250, 414, 523, 1111, 1182, 1486
BstH2I RGCGCY 2 cut(s) 305, 1040
BstHHI GCGC 2 cut(s) 304, 1039
BstKTI GATC 4 cut(s) 392, 405, 460, 1321
BstMAI GTCTC 4 cut(s) 35, 400, 541, 1054
BstMBI GATC 4 cut(s) 389, 402, 457, 1318
BstMCI CGRYCG 1 cut(s) 131
BstNI CCWGG 1 cut(s) 1449
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 685, 1447, 1522
BstSFI CTRYAG 4 cut(s) 317, 609, 834, 945
BstV2I GAAGAC 1 cut(s) 1203
Bsu36I CCTNAGG 1 cut(s) 1431
BsuRI GGCC 3 cut(s) 11, 345, 685
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 8 cut(s) 184, 223, 250, 414, 523, 1111, 1182, 1486
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 4 cut(s) 27, 462, 831, 1257
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 3 cut(s) 312, 412, 632
CaiI CAGNNNCTG 2 cut(s) 842, 1454
CciI TCATGA 1 cut(s) 678
CfoI GCGC 2 cut(s) 304, 1039
Cfr13I GGNCC 2 cut(s) 344, 1570
CseI GACGC 2 cut(s) 17, 486
CsiI ACCWGGT 1 cut(s) 1447
Csp6I GTAC 5 cut(s) 384, 554, 1445, 1452, 1610
CviAII CATG 4 cut(s) 288, 557, 631, 679
CviQI GTAC 5 cut(s) 384, 554, 1445, 1452, 1610
DdeI CTNAG 4 cut(s) 203, 209, 1124, 1431
DpnI GATC 4 cut(s) 391, 404, 459, 1320
DpnII GATC 4 cut(s) 389, 402, 457, 1318
DraI TTTAAA 2 cut(s) 1371, 1467
DraIII CACNNNGTG 1 cut(s) 1046
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 1508
EarI CTCTTC 1 cut(s) 1508
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 1570
Eco47III AGCGCT 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 1233
Eco81I CCTNAGG 1 cut(s) 1431
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 1447
EcoT22I ATGCAT 1 cut(s) 1600
EcoT38I GRGCYC 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 4 cut(s) 291, 560, 634, 682
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 1 cut(s) 1349
FatI CATG 4 cut(s) 287, 556, 630, 678
FblI GTMKAC 1 cut(s) 131
FokI GGATG 8 cut(s) 171, 230, 257, 401, 530, 1118, 1189, 1493
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 6 cut(s) 672, 731, 959, 995, 1119, 1491
GlaI GCGC 2 cut(s) 303, 1038
GsuI CTGGAG 2 cut(s) 1060, 1222
HaeII RGCGCY 2 cut(s) 305, 1040
HaeIII GGCC 3 cut(s) 11, 345, 685
HapII CCGG 4 cut(s) 85, 686, 973, 1523
HgaI GACGC 2 cut(s) 17, 486
HhaI GCGC 2 cut(s) 304, 1039
Hin1II CATG 4 cut(s) 291, 560, 634, 682
Hin6I GCGC 2 cut(s) 302, 1037
HinP1I GCGC 2 cut(s) 302, 1037
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 2 cut(s) 58, 195
HinfI GANTC 8 cut(s) 77, 109, 167, 727, 735, 1307, 1362, 1519
HpaII CCGG 4 cut(s) 85, 686, 973, 1523
HphI GGTGA 4 cut(s) 157, 806, 1234, 1538
Hpy166II GTNNAC 3 cut(s) 132, 1459, 1529
Hpy188I TCNGA 9 cut(s) 154, 204, 339, 400, 544, 1028, 1088, 1323, 1570
Hpy8I GTNNAC 3 cut(s) 132, 1459, 1529
HpyAV CCTTC 4 cut(s) 803, 1186, 1327, 1634
HpyCH4III ACNGT 7 cut(s) 129, 466, 754, 794, 1093, 1384, 1456
HpyCH4IV ACGT 1 cut(s) 573
HpyF3I CTNAG 4 cut(s) 203, 209, 1124, 1431
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 4 cut(s) 291, 560, 634, 682
HspAI GCGC 2 cut(s) 302, 1037
Kpn2I TCCGGA 1 cut(s) 972
Kzo9I GATC 4 cut(s) 389, 402, 457, 1318
LmnI GCTCC 4 cut(s) 975, 991, 1079, 1296
LweI GCATC 4 cut(s) 423, 1089, 1142, 1471
MabI ACCWGGT 1 cut(s) 1447
MaeI CTAG 6 cut(s) 672, 731, 959, 995, 1119, 1491
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 520, 788, 799, 1222
MalI GATC 4 cut(s) 391, 404, 459, 1320
MboI GATC 4 cut(s) 389, 402, 457, 1318
MboII GAAGA 6 cut(s) 479, 774, 1154, 1208, 1239, 1525
MhlI GDGCHC 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 6 cut(s) 40, 148, 1158, 1289, 1645, 1654
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 1371
MmeI TCCRAC 3 cut(s) 343, 442, 1006
Mox20I TGGCCA 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 1600
MroI TCCGGA 1 cut(s) 972
MroXI GAANNNNTTC 2 cut(s) 1161, 1533
MscI TGGCCA 1 cut(s) 11
MseI TTAA 8 cut(s) 909, 914, 1370, 1466, 1562, 1601, 1653, 1657
MslI CAYNNNNRTG 2 cut(s) 1578, 1593
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 322, 950
MspI CCGG 4 cut(s) 85, 686, 973, 1523
MspR9I CCNGG 3 cut(s) 687, 1449, 1524
Mva1269I GAATGC 3 cut(s) 16, 435, 528
MvaI CCWGG 1 cut(s) 1449
NciI CCSGG 2 cut(s) 687, 1524
NdeII GATC 4 cut(s) 389, 402, 457, 1318
NlaIII CATG 4 cut(s) 291, 560, 634, 682
NmuCI GTSAC 3 cut(s) 788, 799, 1222
NsiI ATGCAT 1 cut(s) 1600
NspI RCATGY 1 cut(s) 634
OliI CACNNNNGTG 1 cut(s) 1578
PacI TTAATTAA 1 cut(s) 1657
PaeI GCATGC 1 cut(s) 634
PagI TCATGA 1 cut(s) 678
PaqCI CACCTGC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 3 cut(s) 16, 435, 528
PdmI GAANNNNTTC 2 cut(s) 1161, 1533
PfeI GAWTC 7 cut(s) 77, 109, 167, 727, 735, 1307, 1519
PleI GAGTC 1 cut(s) 1370
PpsI GAGTC 1 cut(s) 1370
PsiI TTATAA 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 1447
PspGI CCWGG 1 cut(s) 1447
PspPI GGNCC 2 cut(s) 344, 1570
PstI CTGCAG 3 cut(s) 321, 613, 838
PstNI CAGNNNCTG 2 cut(s) 842, 1454
PvuII CAGCTG 2 cut(s) 322, 950
RsaI GTAC 5 cut(s) 385, 555, 1446, 1453, 1611
RsaNI GTAC 5 cut(s) 384, 554, 1445, 1452, 1610
RseI CAYNNNNRTG 2 cut(s) 1578, 1593
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 8 cut(s) 909, 914, 1370, 1466, 1562, 1601, 1653, 1657
Sau3AI GATC 4 cut(s) 389, 402, 457, 1318
Sau96I GGNCC 2 cut(s) 344, 1570
ScaI AGTACT 1 cut(s) 385
SchI GAGTC 1 cut(s) 1371
ScrFI CCNGG 3 cut(s) 687, 1449, 1524
SduI GDGCHC 1 cut(s) 337
SexAI ACCWGGT 1 cut(s) 1447
SfaNI GCATC 4 cut(s) 423, 1089, 1142, 1471
SfcI CTRYAG 4 cut(s) 317, 609, 834, 945
SinI GGWCC 1 cut(s) 1570
SmiMI CAYNNNNRTG 2 cut(s) 1578, 1593
SmlI CTYRAG 2 cut(s) 161, 305
SmoI CTYRAG 2 cut(s) 161, 305
SphI GCATGC 1 cut(s) 634
Sse9I AATT 6 cut(s) 40, 148, 1158, 1289, 1645, 1654
SsiI CCGC 2 cut(s) 1265, 1346
SspI AATATT 1 cut(s) 668
SspMI CTAG 6 cut(s) 672, 731, 959, 995, 1119, 1491
StyD4I CCNGG 3 cut(s) 685, 1447, 1522
TaaI ACNGT 7 cut(s) 129, 466, 754, 794, 1093, 1384, 1456
TaiI ACGT 1 cut(s) 576
TaqI TCGA 3 cut(s) 131, 388, 637
TasI AATT 6 cut(s) 40, 148, 1158, 1289, 1645, 1654
TatI WGTACW 2 cut(s) 383, 1609
TauI GCSGC 2 cut(s) 1268, 1349
TfiI GAWTC 7 cut(s) 77, 109, 167, 727, 735, 1307, 1519
Tru1I TTAA 8 cut(s) 909, 914, 1370, 1466, 1562, 1601, 1653, 1657
Tru9I TTAA 8 cut(s) 909, 914, 1370, 1466, 1562, 1601, 1653, 1657
TscAI CASTG 4 cut(s) 27, 469, 838, 1257
TseFI GTSAC 3 cut(s) 788, 799, 1222
Tsp45I GTSAC 3 cut(s) 788, 799, 1222
TspDTI ATGAA 5 cut(s) 80, 173, 276, 1170, 1653
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 4 cut(s) 27, 469, 838, 1257
VpaK11BI GGWCC 1 cut(s) 1570
XapI RAATTY 3 cut(s) 148, 1158, 1289
XceI RCATGY 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 131
XmnI GAANNNNTTC 2 cut(s) 1161, 1533
XspI CTAG 6 cut(s) 672, 731, 959, 995, 1119, 1491
ZrmI AGTACT 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.