Rw6G036520

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008721
Physical Location & Seq
Reverse (-)
61001235 .. 61005466
4232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036520.1

Sequence Viewer

Length: 2673 bp
ATGGAGAATTTCACTCTCCCATGCAAATCAAACCCTCTCATTCCCATAATACCCACCAAACCAGGCAACCCATCAGACTTCTCACCCAGACCCACCAAGGCCACCATCACTTTCTCCAGGAAAACCCGCCCAAATCCACCCGTAGACAATTTGAACCTCCTCTGCAGGAACGGCCAGTTCACGGAGGCCATCGCCGTTCTCGACTCCCTTGCCCAAAGCGGGTCCAAGGTACCGCCCACTACTTACATGAACTTACTTCAGTGCTGCATTGACACAAATTCTATTCAACTGGGCCGGAAGCTCCATCAGAATATTGATGTGGTTGATAAAGTGAACCCCTTTGTGGAGACCAAGCTGGTGAGCATGTACGCGAAATGTGGGTTCTTGGAAGACGCACGCAAGGTGTTCGACGGAATGCGTGAGAGGAATTTGTACTCTTGGTCGGCCATGATCGGTGCGTGTCTCAGAGACCGGAGGTGGAATGAGGTGGTGGAGCTTTTTGTGTTGATGGTGAGAGACGGAGTTTTGCCGGATTACTTTCTGTTTCCGAAGGTGTTGCAGGCCTGTGGGAACTGTTGTGATTTCGAGGCCTCGAAAATGATACATTCCATGGTGGTGAGGTCCAATTTGAGTGGTACTATACATATAAACAATTCGTTATTGGCGGTTTACGCCAAGTGTGGGAAGTTGAAGTGGGCGAGGAAGTTTTTTGAGAAAATGGAGGTGAGGGATGGGGTGACTTGGAACACAATTATATCTGGTTATTGCCAGAATGGTGAGAATGAAGAAGCTCGGAGGCTGATTGATGCAATGATCAAACAGGGGATTGAACCGGGGTTGGTCACTTGGAATATATTGATTTCTAGTTTTAATAAGTCGGGGCAGTGTGATGTAGCGATGGAACTGATGAAGAAGATGGAGAACTCTGGGATCACTCCTGATGTGTATACTTGGACTTCTATGATTTCGGGGTTTGCTCAGAACAACAGGACGAATCAGGCATTGGATTTGTGGAAGAAGATGCTTTTGTCTGGGGTACAACCAAATGGCATTACGATTGCTAGTGCAATCTCAGCTTGCACATCTTTGAAATCACTGACCAAAGGTTTGGAAATTTATGCTTTTGCTGTGAAGATGGGACTCATTGATGATGTACTCATTGGAAATTCGCTCATTGACATGTTTTCAAAGTGTGGGGACCTGGAAGCTGCTGAGCAAATCTTTACTATGATCTCAGATAAAGACGTCTACACTTGGAACTCCATGATAGGAGGATATTGCCAAGCTAGGTACTGTGGTAAGGCCTATGAACTGTTCATGAAGATGCAGGAATCAGATGTACATCCTAATGCCATCACGTATAATGTGATGATCACAGGCTACATTCAGAATGGAGATGCTGATCAAGCAATGGATCTCTTCCAAATGATGGAACGAGATGGGAAAGTTAAGCGGAATACAGCATCGTGGAACTCTCTTATTGCTGGTTTTGCTCAACTTGGGGAAATAAATGAGGCACTTAGGATATTCAGGAAGATGCAAGCCTTCAGTGTTAGCCCCAATTCAGTTACTTTGTTGAGTATCCTGCCCGCTTGTGGGAGTTTAGTTGCCATGAAAAAGGTGAAAGAGATCCATTGTAGTGTATTTCGAAGAAATTTGGAGTCTGAAGTCCCTGTTGCAAATTCTCTGATAGACACATATGCAAAATCAGGAAACATAGAGTATTCAAGAACCATATTCGATAGACTGTCATCGAAAGATATTATTACCTGGAACTCGGCAATTTCTGGTTATGTTTTACATGGTCATCCAGATATTGCACTTGATCTTTTTGACCAGATGAAGAAGTTGGGGCTAAAACCAAATAGAGGTACCTTTGCTAGTATTCTATATGCCTACAGTCTTGCTGGACTGGTAAATGAGGGGACAGAAGCTCTTTCTAGCATCAGTGAAGACTATCAAATAATACCAGGTCCAGAACATTATTCAGCTATTGTAGACCTATATGGACGTTCGGGTAGGCTTCAAGCAGCAATGGGGTTTATTGAAGATATGCCGATAGAACCAGACTCCTCTGTTTGGGCTGCCTTACTTACAGCATGCAGGATTCATGGGAACCTTGGCTTGGCAATTCATGCAGGGGAGCGCTTAATTGACTTGGAACCAGCGAATGTTCTGATTCAACAGTTTTTATTACAGGCATATGCTTTATCCGGGAAGCCGGATGATACCTCAAAGTTGAGAAGGTTTGGAAAAGAGAATGCAACAATAAAGAGATCTCTTGGTCAGTGCTGGATGGAAGTCAAAAACACAGTGCATACGTTTGTTGCAGGTGATAGGTCGAAATTATGCTCAAAGTATGTAAACTCGTGGTTACAAGACATAGCAGAAAAGGCAAAAGGACCTGGTTTTCGTTGTGCGCTTGGTGTTGAGGATGAAGAGGAGGGAATCAGCATGGTCCACAGTGAAAAACTTGCCCTTGCTTTTGCTCTCATTGGCTCTCCATCTCTACCCAAAAGTATCAGGATAGAAAAAAATCTGAGAATGTGTGGAGATTGCCACAGGACAGCTAAATATATATCAATGGCTTTTGGATGTGATATATATTTAAGTGATTCAAAGTCCTTACACCATTTTAGCAATGGGCGTTGTTCTTGTGGCGATTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

890

Amino Acids

99.02

Weight (kDa)

7.85

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 244 - 282 6.2e-10 PPR repeat family
PPR_3 PF13812 244 - 290 6.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 244 - 271 3.9e-08 PPR repeat
PPR PF01535 246 - 276 1.8e-08 PPR repeat
PPR_1 PF12854 275 - 307 2.1e-06 PPR repeat
PPR_2 PF13041 278 - 326 3.6e-14 PPR repeat family
PPR PF01535 281 - 311 7e-07 PPR repeat
PPR_3 PF13812 302 - 360 1.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 310 - 341 6.8e-08 PPR repeat
PPR_2 PF13041 313 - 360 1e-10 PPR repeat family
PPR PF01535 316 - 346 1e-06 PPR repeat
PPR_2 PF13041 414 - 461 7.1e-15 PPR repeat family
PPR_3 PF13812 415 - 461 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 417 - 446 5.6e-08 PPR repeat
PPR_long PF17177 433 - 535 3.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 447 - 478 4.8e-07 PPR repeat
PPR_2 PF13041 449 - 481 1.4e-07 PPR repeat family
PPR PF01535 452 - 481 4.5e-08 PPR repeat
TPR_24 PF23276 463 - 574 3.3e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 486 - 532 5.5e-09 PPR repeat family
PPR PF01535 489 - 515 2.6e-06 PPR repeat
PPR_2 PF13041 586 - 632 8.1e-11 PPR repeat family
PPR_3 PF13812 587 - 633 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 589 - 619 3.8e-07 PPR repeat
DYW_deaminase PF14432 811 - 890 3.2e-26 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2321
AatII GACGTC 1 cut(s) 1248
Acc36I ACCTGC 1 cut(s) 2321
Acc65I GGTACC 2 cut(s) 229, 1871
AccB1I GGYRCC 2 cut(s) 229, 1871
AccB7I CCANNNNNTGG 1 cut(s) 1429
AccI GTMKAC 4 cut(s) 144, 947, 1248, 1998
AccII CGCG 1 cut(s) 371
AciI CCGC 6 cut(s) 127, 219, 233, 665, 1453, 1590
AclWI GGATC 3 cut(s) 938, 1422, 1624
AcoI YGGCCR 2 cut(s) 172, 444
AcsI RAATTY 7 cut(s) 7, 277, 427, 1113, 1165, 1654, 1681
AcuI CTGAAG 3 cut(s) 242, 1531, 1686
AcyI GRCGYC 1 cut(s) 1245
AfaI GTAC 9 cut(s) 231, 368, 434, 637, 1038, 1155, 1292, 1341, 1873
AfeI AGCGCT 1 cut(s) 2147
AflIII ACRYGT 1 cut(s) 1179
AjnI CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
AjuI GAANNNNNNNTTGG 4 cut(s) 986, 1018, 2108, 2140
Alw26I GTCTC 4 cut(s) 341, 462, 467, 510
AlwI GGATC 3 cut(s) 938, 1422, 1624
Aor51HI AGCGCT 1 cut(s) 2147
AoxI GGCC 8 cut(s) 99, 172, 186, 292, 444, 561, 588, 1302
ApeKI GCWGC 4 cut(s) 264, 1208, 2030, 2084
ApoI RAATTY 7 cut(s) 7, 277, 427, 1113, 1165, 1654, 1681
ArsI GACNNNNNNTTYG 4 cut(s) 1090, 1122, 2394, 2426
Asp718I GGTACC 2 cut(s) 229, 1871
AspLEI GCGC 2 cut(s) 2148, 2422
AspS9I GGNCC 7 cut(s) 222, 292, 621, 1198, 1973, 2402, 2458
AsuC2I CCSGG 2 cut(s) 834, 2215
AsuHPI GGTGA 9 cut(s) 75, 370, 523, 628, 736, 748, 788, 1633, 2345
AsuII TTCGAA 1 cut(s) 1648
AvaII GGWCC 6 cut(s) 222, 621, 1198, 1973, 2402, 2458
BaeI ACNNNNGTAYC 2 cut(s) 1282, 1315
BanI GGYRCC 2 cut(s) 229, 1871
BauI CACGAG 1 cut(s) 2368
BbsI GAAGAC 2 cut(s) 396, 1959
BbvI GCAGC 4 cut(s) 251, 1195, 2042, 2071
BceAI ACGGC 2 cut(s) 179, 187
BcgI CGANNNNNNTGC 6 cut(s) 191, 225, 388, 422, 538, 572
BciT130I CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
BciVI GTATCC 1 cut(s) 1592
BclI TGATCA 3 cut(s) 813, 1371, 1402
BcnI CCSGG 2 cut(s) 834, 2215
BcoDI GTCTC 4 cut(s) 341, 462, 467, 510
BfaI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
BfmI CTRYAG 2 cut(s) 163, 1897
BfoI RGCGCY 1 cut(s) 2149
BfuAI ACCTGC 1 cut(s) 2321
BfuI GTATCC 1 cut(s) 1592
BglII AGATCT 1 cut(s) 2276
BisI GCNGC 4 cut(s) 265, 1209, 2031, 2085
BlpI GCTNAGC 1 cut(s) 1212
BlsI GCNGC 4 cut(s) 266, 1210, 2032, 2086
Bme1390I CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
Bme18I GGWCC 6 cut(s) 222, 621, 1198, 1973, 2402, 2458
BmgT120I GGNCC 7 cut(s) 222, 292, 621, 1198, 1973, 2402, 2458
BmiI GGNNCC 6 cut(s) 223, 231, 1199, 1873, 2117, 2163
BmrFI CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 7 cut(s) 796, 1011, 1314, 1387, 1472, 1527, 1953
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 2 cut(s) 396, 1959
BpmI CTGGAG 1 cut(s) 100
Bpu1102I GCTNAGC 1 cut(s) 1212
Bpu14I TTCGAA 1 cut(s) 1648
BpuMI CCSGG 2 cut(s) 834, 2215
BsaAI YACGTR 1 cut(s) 1359
BsaBI GATNNNNATC 2 cut(s) 1341, 1401
BsaHI GRCGYC 1 cut(s) 1245
BsaI GGTCTC 2 cut(s) 341, 462
BsaJI CCNNGG 5 cut(s) 96, 225, 609, 833, 2119
BsaWI WCCGGW 1 cut(s) 471
Bse1I ACTGG 3 cut(s) 175, 294, 1917
Bse3DI GCAATG 4 cut(s) 816, 1416, 2040, 2647
Bse8I GATNNNNATC 2 cut(s) 1341, 1401
BseBI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
BseDI CCNNGG 5 cut(s) 96, 225, 609, 833, 2119
BseGI GGATG 7 cut(s) 736, 1342, 1807, 2230, 2301, 2440, 2600
BseJI GATNNNNATC 2 cut(s) 1341, 1401
BseMI GCAATG 4 cut(s) 816, 1416, 2040, 2647
BseMII CTCAG 6 cut(s) 478, 992, 1086, 1203, 1248, 2531
BseNI ACTGG 3 cut(s) 175, 294, 1917
BseRI GAGGAG 3 cut(s) 149, 2062, 2456
BseXI GCAGC 4 cut(s) 251, 1195, 2042, 2071
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 8 cut(s) 101, 174, 188, 294, 446, 563, 590, 1304
BshNI GGYRCC 2 cut(s) 229, 1871
BsiSI CCGG 6 cut(s) 295, 472, 530, 833, 2214, 2222
BslFI GGGAC 4 cut(s) 1152, 1211, 1655, 1939
BsmAI GTCTC 4 cut(s) 341, 462, 467, 510
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 4 cut(s) 1152, 1211, 1655, 1939
BsmI GAATGC 2 cut(s) 420, 2266
BsnI GGCC 8 cut(s) 101, 174, 188, 294, 446, 563, 590, 1304
Bso31I GGTCTC 2 cut(s) 341, 462
Bsp119I TTCGAA 1 cut(s) 1648
Bsp1407I TGTACA 1 cut(s) 1339
Bsp1720I GCTNAGC 1 cut(s) 1212
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 6 cut(s) 127, 219, 233, 665, 1453, 1590
BspANI GGCC 8 cut(s) 101, 174, 188, 294, 446, 563, 590, 1304
BspCNI CTCAG 6 cut(s) 477, 991, 1085, 1204, 1247, 2532
BspFNI CGCG 1 cut(s) 371
BspHI TCATGA 1 cut(s) 1317
BspLI GGNNCC 6 cut(s) 223, 231, 1199, 1873, 2117, 2163
BspMAI CTGCAG 1 cut(s) 167
BspMI ACCTGC 1 cut(s) 2321
BspPI GGATC 3 cut(s) 938, 1422, 1624
BspT104I TTCGAA 1 cut(s) 1648
BspT107I GGYRCC 2 cut(s) 229, 1871
BspTNI GGTCTC 2 cut(s) 341, 462
BsrDI GCAATG 4 cut(s) 816, 1416, 2040, 2647
BsrGI TGTACA 1 cut(s) 1339
BsrI ACTGG 3 cut(s) 175, 294, 1917
BssECI CCNNGG 5 cut(s) 96, 225, 609, 833, 2119
BssNAI GTATAC 1 cut(s) 948
BssNI GRCGYC 1 cut(s) 1245
BssSI CACGAG 1 cut(s) 2368
BssT1I CCWWGG 4 cut(s) 96, 225, 609, 2119
Bst1107I GTATAC 1 cut(s) 948
Bst2BI CACGAG 1 cut(s) 2368
Bst2UI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
Bst4CI ACNGT 8 cut(s) 575, 1295, 1314, 1749, 1901, 2187, 2314, 2465
Bst6I CTCTTC 2 cut(s) 1424, 2433
BstACI GRCGYC 1 cut(s) 1245
BstAPI GCANNNNNTGC 1 cut(s) 2135
BstAUI TGTACA 1 cut(s) 1339
BstBAI YACGTR 1 cut(s) 1359
BstBI TTCGAA 1 cut(s) 1648
BstC8I GCNNGC 6 cut(s) 397, 561, 1078, 1542, 1590, 2101
BstDEI CTNAG 7 cut(s) 464, 978, 1072, 1212, 1234, 1520, 2540
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 7 cut(s) 736, 1342, 1807, 2230, 2301, 2440, 2600
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 2149
BstHHI GCGC 2 cut(s) 2148, 2422
BstMAI GTCTC 4 cut(s) 341, 462, 467, 510
BstMWI GCNNNNNNNGC 7 cut(s) 171, 671, 1073, 1406, 1490, 2135, 2393
BstNI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
BstNSI RCATGY 3 cut(s) 367, 1183, 2103
BstSCI CCNGG 8 cut(s) 61, 116, 832, 1200, 1769, 1969, 2213, 2404
BstSFI CTRYAG 2 cut(s) 163, 1897
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 4 cut(s) 251, 1195, 2042, 2071
BstV2I GAAGAC 2 cut(s) 396, 1959
BstX2I RGATCY 3 cut(s) 1414, 1629, 2276
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 3 cut(s) 1414, 1629, 2276
BstZ17I GTATAC 1 cut(s) 948
BsuI GTATCC 1 cut(s) 1592
BsuRI GGCC 8 cut(s) 101, 174, 188, 294, 446, 563, 590, 1304
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 2 cut(s) 175, 911
BtsCI GGATG 7 cut(s) 736, 1342, 1807, 2230, 2301, 2440, 2600
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 8 cut(s) 266, 890, 1094, 1555, 1954, 2294, 2319, 2470
BveI ACCTGC 1 cut(s) 2321
Cac8I GCNNGC 6 cut(s) 397, 561, 1078, 1542, 1590, 2101
CciI TCATGA 1 cut(s) 1317
CfoI GCGC 2 cut(s) 2148, 2422
Cfr13I GGNCC 7 cut(s) 222, 292, 621, 1198, 1973, 2402, 2458
CseI GACGC 1 cut(s) 401
CsiI ACCWGGT 2 cut(s) 1969, 2404
Csp6I GTAC 9 cut(s) 230, 367, 433, 636, 1037, 1154, 1291, 1340, 1872
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviQI GTAC 9 cut(s) 230, 367, 433, 636, 1037, 1154, 1291, 1340, 1872
DdeI CTNAG 7 cut(s) 464, 978, 1072, 1212, 1234, 1520, 2540
EaeI YGGCCR 2 cut(s) 172, 444
Eam1104I CTCTTC 2 cut(s) 1424, 2433
EarI CTCTTC 2 cut(s) 1424, 2433
Eco130I CCWWGG 4 cut(s) 96, 225, 609, 2119
Eco147I AGGCCT 3 cut(s) 563, 590, 1304
Eco31I GGTCTC 2 cut(s) 341, 462
Eco47I GGWCC 6 cut(s) 222, 621, 1198, 1973, 2402, 2458
Eco47III AGCGCT 1 cut(s) 2147
Eco57I CTGAAG 3 cut(s) 242, 1531, 1686
EcoO109I RGGNCCY 2 cut(s) 1198, 2402
EcoRII CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
EcoT14I CCWWGG 4 cut(s) 96, 225, 609, 2119
ErhI CCWWGG 4 cut(s) 96, 225, 609, 2119
Esp3I CGTCTC 1 cut(s) 510
FaqI GGGAC 4 cut(s) 1152, 1211, 1655, 1939
FauI CCCGC 3 cut(s) 134, 212, 1597
FauNDI CATATG 2 cut(s) 1699, 2203
FbaI TGATCA 3 cut(s) 813, 1371, 1402
FblI GTMKAC 4 cut(s) 144, 947, 1248, 1998
Fnu4HI GCNGC 4 cut(s) 265, 1209, 2031, 2085
FokI GGATG 7 cut(s) 743, 1329, 1794, 2237, 2308, 2447, 2607
Fsp4HI GCNGC 4 cut(s) 265, 1209, 2031, 2085
FspBI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
GlaI GCGC 2 cut(s) 2147, 2421
GluI GCNGC 4 cut(s) 265, 1209, 2031, 2085
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 2149
HaeIII GGCC 8 cut(s) 101, 174, 188, 294, 446, 563, 590, 1304
HapII CCGG 6 cut(s) 295, 472, 530, 833, 2214, 2222
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 2148, 2422
Hin1I GRCGYC 1 cut(s) 1245
Hin6I GCGC 2 cut(s) 2146, 2420
HinP1I GCGC 2 cut(s) 2146, 2420
HpaII CCGG 6 cut(s) 295, 472, 530, 833, 2214, 2222
HphI GGTGA 9 cut(s) 75, 370, 523, 628, 736, 748, 788, 1633, 2345
Hpy166II GTNNAC 9 cut(s) 145, 180, 334, 670, 948, 1249, 1999, 2365, 2461
Hpy188III TCNNGA 9 cut(s) 200, 938, 1318, 1531, 1710, 1728, 1811, 1976, 2524
Hpy8I GTNNAC 9 cut(s) 145, 180, 334, 670, 948, 1249, 1999, 2365, 2461
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 3 cut(s) 544, 1555, 2238
HpyCH4III ACNGT 8 cut(s) 575, 1295, 1314, 1749, 1901, 2187, 2314, 2465
HpyCH4IV ACGT 4 cut(s) 1245, 1358, 2011, 2321
HpyF10VI GCNNNNNNNGC 7 cut(s) 171, 671, 1073, 1406, 1490, 2135, 2393
HpyF3I CTNAG 7 cut(s) 464, 978, 1072, 1212, 1234, 1520, 2540
HpySE526I ACGT 4 cut(s) 1245, 1358, 2011, 2321
Hsp92I GRCGYC 1 cut(s) 1245
HspAI GCGC 2 cut(s) 2146, 2420
KpnI GGTACC 2 cut(s) 233, 1875
Ksp22I TGATCA 3 cut(s) 813, 1371, 1402
LmnI GCTCC 3 cut(s) 306, 493, 2143
Lsp1109I GCAGC 4 cut(s) 251, 1195, 2042, 2071
LweI GCATC 7 cut(s) 796, 1011, 1314, 1387, 1472, 1527, 1953
MabI ACCWGGT 2 cut(s) 1969, 2404
MaeI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
MaeII ACGT 4 cut(s) 1245, 1358, 2011, 2321
MaeIII GTNAC 4 cut(s) 736, 841, 1567, 2373
MflI RGATCY 3 cut(s) 1414, 1629, 2276
MlyI GAGTC 4 cut(s) 197, 1134, 1670, 2063
MseI TTAA 4 cut(s) 870, 1449, 2150, 2609
MslI CAYNNNNRTG 5 cut(s) 614, 1178, 1322, 1347, 1638
MspI CCGG 6 cut(s) 295, 472, 530, 833, 2214, 2222
MspR9I CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
Mva1269I GAATGC 2 cut(s) 420, 2266
MvaI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 7 cut(s) 171, 671, 1073, 1406, 1490, 2135, 2393
NciI CCSGG 2 cut(s) 834, 2215
NcoI CCATGG 1 cut(s) 609
NdeI CATATG 2 cut(s) 1699, 2203
NlaIV GGNNCC 6 cut(s) 223, 231, 1199, 1873, 2117, 2163
NmeAIII GCCGAG 1 cut(s) 1757
NmuCI GTSAC 2 cut(s) 736, 841
NspI RCATGY 3 cut(s) 367, 1183, 2103
NspV TTCGAA 1 cut(s) 1648
PaeI GCATGC 1 cut(s) 2103
PagI TCATGA 1 cut(s) 1317
PaqCI CACCTGC 1 cut(s) 2321
PceI AGGCCT 3 cut(s) 563, 590, 1304
PciI ACATGT 1 cut(s) 1179
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 420, 2266
PfeI GAWTC 6 cut(s) 994, 1331, 2107, 2179, 2448, 2615
PflMI CCANNNNNTGG 1 cut(s) 1429
PfoI TCCNGGA 2 cut(s) 116, 2213
PkrI GCNGC 4 cut(s) 266, 1210, 2032, 2086
PleI GAGTC 4 cut(s) 197, 1134, 1669, 2063
PpsI GAGTC 4 cut(s) 197, 1134, 1669, 2063
Ppu21I YACGTR 1 cut(s) 1359
PpuMI RGGWCCY 2 cut(s) 1198, 2402
PscI ACATGT 1 cut(s) 1179
Psp5II RGGWCCY 2 cut(s) 1198, 2402
Psp6I CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
PspGI CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
PspN4I GGNNCC 6 cut(s) 223, 231, 1199, 1873, 2117, 2163
PspPI GGNCC 7 cut(s) 222, 292, 621, 1198, 1973, 2402, 2458
PspPPI RGGWCCY 2 cut(s) 1198, 2402
PstI CTGCAG 1 cut(s) 167
PsuI RGATCY 3 cut(s) 1414, 1629, 2276
RsaI GTAC 9 cut(s) 231, 368, 434, 637, 1038, 1155, 1292, 1341, 1873
RsaNI GTAC 9 cut(s) 230, 367, 433, 636, 1037, 1154, 1291, 1340, 1872
RseI CAYNNNNRTG 5 cut(s) 614, 1178, 1322, 1347, 1638
SaqAI TTAA 4 cut(s) 870, 1449, 2150, 2609
SatI GCNGC 4 cut(s) 265, 1209, 2031, 2085
Sau96I GGNCC 7 cut(s) 222, 292, 621, 1198, 1973, 2402, 2458
SchI GAGTC 4 cut(s) 197, 1134, 1670, 2063
ScrFI CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
SexAI ACCWGGT 2 cut(s) 1969, 2404
SfaNI GCATC 7 cut(s) 796, 1011, 1314, 1387, 1472, 1527, 1953
SfcI CTRYAG 2 cut(s) 163, 1897
SfuI TTCGAA 1 cut(s) 1648
SinI GGWCC 6 cut(s) 222, 621, 1198, 1973, 2402, 2458
SmiMI CAYNNNNRTG 5 cut(s) 614, 1178, 1322, 1347, 1638
SphI GCATGC 1 cut(s) 2103
SseBI AGGCCT 3 cut(s) 563, 590, 1304
SsiI CCGC 6 cut(s) 127, 219, 233, 665, 1453, 1590
SspI AATATT 1 cut(s) 313
SspMI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
StuI AGGCCT 3 cut(s) 563, 590, 1304
StyD4I CCNGG 8 cut(s) 61, 116, 832, 1200, 1769, 1969, 2213, 2404
StyI CCWWGG 4 cut(s) 96, 225, 609, 2119
TaaI ACNGT 8 cut(s) 575, 1295, 1314, 1749, 1901, 2187, 2314, 2465
TaiI ACGT 4 cut(s) 1248, 1361, 2014, 2324
TaqI TCGA 8 cut(s) 201, 408, 585, 593, 1648, 1740, 1754, 2342
TatI WGTACW 3 cut(s) 432, 1153, 1339
TfiI GAWTC 6 cut(s) 994, 1331, 2107, 2179, 2448, 2615
Tru1I TTAA 4 cut(s) 870, 1449, 2150, 2609
Tru9I TTAA 4 cut(s) 870, 1449, 2150, 2609
TscAI CASTG 8 cut(s) 266, 890, 1101, 1555, 1954, 2294, 2319, 2470
TseFI GTSAC 2 cut(s) 736, 841
TseI GCWGC 4 cut(s) 264, 1208, 2030, 2084
Tsp45I GTSAC 2 cut(s) 736, 841
TspGWI ACGGA 3 cut(s) 197, 426, 534
TspRI CASTG 8 cut(s) 266, 890, 1101, 1555, 1954, 2294, 2319, 2470
Van91I CCANNNNNTGG 1 cut(s) 1429
VpaK11BI GGWCC 6 cut(s) 222, 621, 1198, 1973, 2402, 2458
XapI RAATTY 7 cut(s) 7, 277, 427, 1113, 1165, 1654, 1681
XceI RCATGY 3 cut(s) 367, 1183, 2103
XcmI CCANNNNNNNNNTGG 1 cut(s) 2639
XmiI GTMKAC 4 cut(s) 144, 947, 1248, 1998
XspI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
ZraI GACGTC 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.