Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008721

Physical Location & Seq

Genomic Coordinates Reverse (-)

24086817 .. 24088713

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGAGAATTTCACAATCCCATGCAAATCAAGCCCTCCCACACCTATTCTACCCTCCAAACTTGGCAACCCATCTGAATTCTCACTAAGACACGCCAAACCCATAATCTCTTTCTCCAGGAAAACTCTCCCAAAATTCACCGACACTCATTTAAACTATCTCTGCAAGAATGGCCAGTTCAGCGAGGCCATCACGGTTCTTGACTCTATTGCCCAAATTGGGTACAAGGTACCACCCACCACTTATATGAATTTACTTCAATCTTTTGAGGAAATAAACCCATTTGTTGAGACTAAGTTGGTGAGCATGTATGCCAAATGTGGGTTTTTGGATGATGCTCGTAAGGTGTTTCACGCAATGCGTGAGAGAAATTTGTACGCTTGGTCAGCCATGATTGGTGCGTGTCTTAGAGACCAAAGGTGGAAAGAGGTTGTGGAGCTTTTTTTCTCGATGATGAAAGATGGAGTTTTTCCGGATTACTTTTTGTTCCCTAAGATATTGCAGGCTTGTGGGAATTGTTCCAATATCGAGGCCACGAAATTGATACATTCCATTGCGGTTCGGTGTAATTTGACTAGTTGTTTTTTTGACAACATGGATGAGAGGGATGGGGTGAGTTGGAATGCAATTATATCTGGTTATTGCCACAAGGGTGAGAGTGAAGAAGCTCGTAGACTGTTTGATGCGATGAGCAAAGAAGGGATTGAACCAGGTTTGGTAACGTGGAATACGTTAATTGCTAGTCATAACCAGTTACGGCATTGCGATGTTGCGATGGAACTGATGAGAAGGATGGAGAGCTGTGGGATAACTCCTGATAAGATGCTTTTGGCAGGGGTACAACCAAACGGGATTACAATTACTAGTGCAATCTCAGCATGCACATCTTTAAAATCACTGAACCAAGGGTTGGAAATCTATTCTCTTGCTATCAAGATGGGTTGCATTGATGACGTACTGGTTGGAAATTCACTCATTGACATGTTTTCAAAGTGTGGGGAAGTGGAAGCTGCTCAGAAGGTCTTCAGTATGATCCCAGAGAAAGATGTCTACACTTGGAACTCAATGATAGGAGGATATTGCCAAGCCAAGTATTGTGGTAAGGCGTATGAACTGTTCACGAAGATGCAGGAATCAGATGTACATCCCAATGCCGTGACCTGGAATGTGATGATCACAGGATACATGCAGAATGGAGATGCTGATCAAGCAATGGACCTCTTCCAAAAGATGGAAAAAGATGGGAAAATTAAACGAAATACGGCATCATGGAACTCTCTTGTCTCTGGCTACCTGCAACTTGGGGAAAAAAACAAGCCATTTGGGGTGTTCAGGCAGATGCAGGCCTACTGTGTTAATCCCAATTCAGTTACTATATTGAGTGTCCTACCTTCTTGTGCGAATTTAGTTGCCATGAAAAAGGTGAAAGAGATTCATGGTAGTGTATTGCGTCGAAATTTGGAGTCTGAAATCCCTGTTGCAAATTCCCTGATCGACACTTATGCCAAATCAGGAAACATAGCATATTCAAGAATCATATTTGATACAATGTCGTCCAAAGATACCATCACCTGGAACTCGGCAATTTCTGGTTATGTCTTACATGGTCGTTCAGATGTTGCACTTGATCTTTTCGATCAGATGAAGAAGTCGGGGTTTAAACCAAATAGAGGTACCTTTGCAAATATCATACATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

567

Amino Acids

63.35

Weight (kDa)

8.0

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19720
fragaria_vesca	FvH4_5g24641
malus_domestica	MD08G1023800.v1.1 MD15G1021300.v1.1
prunus_persica	Prupe.1G227600_v2.0.a1 Prupe.1G373200_v2.0.a1 Prupe.1G373200_v2.0.a1
pyrus_communis	pycom08g01860 pycom15g01760 pycom15g01770
rosa_chinensis	RchiOBHm_Chr6g0301801
rosa_laevigata	RLG00000011220
rosa_multiflora	Rmu_sc0005454.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166390
rosa_rugosa	Rorug06G0309900.1 Rorug06G0310000.1 Rorug06G0310100 Rorug06G0310100
rosa_samantha	Rh6AG421700 Rh6BG428400 Rh6CG435000 Rh6DG421800
rosa_wichuraiana	Rw6G036520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1302
Acc65I	GGTACC	2 cut(s)	229, 1673
AccB1I	GGYRCC	2 cut(s)	229, 1673
AccB7I	CCANNNNNTGG	3 cut(s)	910, 1231, 1572
AccI	GTMKAC	2 cut(s)	673, 1050
AccIII	TCCGGA	1 cut(s)	472
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	1027
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	9 cut(s)	7, 77, 134, 250, 370, 967, 1402, 1456, 1483
AcuI	CTGAAG	1 cut(s)	1009
AfaI	GTAC	7 cut(s)	224, 231, 377, 840, 957, 1143, 1675
AfiI	CCNNNNNNNGG	7 cut(s)	219, 321, 910, 1161, 1231, 1572, 1670
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	4 cut(s)	260, 707, 990, 1530
AhlI	ACTAGT	2 cut(s)	575, 863
AjnI	CCWGG	4 cut(s)	116, 709, 1160, 1571
AjuI	GAANNNNNNNTTGG	2 cut(s)	893, 925
AleI	CACNNNNGTG	1 cut(s)	651
AluBI	AGCT	4 cut(s)	439, 668, 801, 1010
AluI	AGCT	4 cut(s)	439, 668, 801, 1010
Alw26I	GTCTC	3 cut(s)	284, 405, 1288
AlwI	GGATC	1 cut(s)	1027
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	4 cut(s)	172, 186, 531, 1344
ApeKI	GCWGC	1 cut(s)	1010
ApoI	RAATTY	9 cut(s)	7, 77, 134, 250, 370, 967, 1402, 1456, 1483
Asp700I	GAANNNNTTC	1 cut(s)	1022
Asp718I	GGTACC	2 cut(s)	229, 1673
AspS9I	GGNCC	1 cut(s)	1216
AsuHPI	GGTGA	6 cut(s)	130, 313, 625, 665, 1435, 1561
AvaII	GGWCC	1 cut(s)	1216
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	2 cut(s)	229, 1673
BbsI	GAAGAC	1 cut(s)	1015
BbvI	GCAGC	1 cut(s)	997
BceAI	ACGGC	3 cut(s)	773, 1139, 1278
BcgI	CGANNNNNNTGC	2 cut(s)	1484, 1518
BciT130I	CCWGG	4 cut(s)	118, 711, 1162, 1573
BciVI	GTATCC	1 cut(s)	1175
BclI	TGATCA	2 cut(s)	1173, 1204
BcoDI	GTCTC	3 cut(s)	284, 405, 1288
BcuI	ACTAGT	2 cut(s)	575, 863
BfaI	CTAG	3 cut(s)	576, 741, 864
BfuAI	ACCTGC	1 cut(s)	1302
BfuI	GTATCC	1 cut(s)	1175
BisI	GCNGC	1 cut(s)	1011
BlsI	GCNGC	1 cut(s)	1012
Bme1390I	CCNGG	4 cut(s)	118, 711, 1162, 1573
Bme18I	GGWCC	1 cut(s)	1216
BmgT120I	GGNCC	1 cut(s)	1216
BmiI	GGNNCC	2 cut(s)	231, 1675
BmrFI	CCNGG	4 cut(s)	118, 711, 1162, 1573
BmsI	GCATC	7 cut(s)	325, 673, 813, 1116, 1189, 1274, 1329
BpiI	GAAGAC	1 cut(s)	1015
BpmI	CTGGAG	1 cut(s)	100
BsaBI	GATNNNNATC	2 cut(s)	1143, 1203
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	904
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	7 cut(s)	219, 321, 910, 1161, 1231, 1572, 1670
Bse1I	ACTGG	3 cut(s)	175, 751, 963
Bse3DI	GCAATG	4 cut(s)	363, 552, 760, 1218
Bse8I	GATNNNNATC	2 cut(s)	1143, 1203
BseAI	TCCGGA	1 cut(s)	472
BseBI	CCWGG	4 cut(s)	118, 711, 1162, 1573
BseDI	CCNNGG	1 cut(s)	904
BseGI	GGATG	5 cut(s)	337, 604, 613, 798, 1144
BseJI	GATNNNNATC	2 cut(s)	1143, 1203
BseLI	CCNNNNNNNGG	7 cut(s)	219, 321, 910, 1161, 1231, 1572, 1670
BseMI	GCAATG	4 cut(s)	363, 552, 760, 1218
BseMII	CTCAG	2 cut(s)	888, 1028
BseNI	ACTGG	3 cut(s)	175, 751, 963
BseXI	GCAGC	1 cut(s)	997
BshFI	GGCC	4 cut(s)	174, 188, 533, 1346
BshNI	GGYRCC	2 cut(s)	229, 1673
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	7 cut(s)	219, 321, 910, 1161, 1231, 1572, 1670
BsmAI	GTCTC	3 cut(s)	284, 405, 1288
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	4 cut(s)	174, 188, 533, 1346
Bso31I	GGTCTC	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	472
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp143I	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	4 cut(s)	174, 188, 533, 1346
BspCNI	CTCAG	2 cut(s)	887, 1027
BspEI	TCCGGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	231, 1675
BspMI	ACCTGC	1 cut(s)	1302
BspPI	GGATC	1 cut(s)	1027
BspT107I	GGYRCC	2 cut(s)	229, 1673
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	4 cut(s)	363, 552, 760, 1218
BsrGI	TGTACA	1 cut(s)	1141
BsrI	ACTGG	3 cut(s)	175, 751, 963
BssECI	CCNNGG	1 cut(s)	904
BssMI	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
BssT1I	CCWWGG	1 cut(s)	904
Bst2UI	CCWGG	4 cut(s)	118, 711, 1162, 1573
Bst4CI	ACNGT	4 cut(s)	196, 678, 1116, 1352
Bst6I	CTCTTC	1 cut(s)	1226
BstAUI	TGTACA	1 cut(s)	1141
BstC8I	GCNNGC	3 cut(s)	504, 880, 1344
BstDEI	CTNAG	6 cut(s)	86, 294, 407, 492, 874, 1014
BstF5I	GGATG	5 cut(s)	337, 604, 613, 798, 1144
BstKTI	GATC	6 cut(s)	1035, 1176, 1207, 1494, 1630, 1639
BstMAI	GTCTC	3 cut(s)	284, 405, 1288
BstMBI	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 171, 180, 386, 875, 1208
BstNI	CCWGG	4 cut(s)	118, 711, 1162, 1573
BstNSI	RCATGY	5 cut(s)	310, 882, 985, 1189, 1697
BstSCI	CCNGG	4 cut(s)	116, 709, 1160, 1571
BstV1I	GCAGC	1 cut(s)	997
BstV2I	GAAGAC	1 cut(s)	1015
BsuI	GTATCC	1 cut(s)	1175
BsuRI	GGCC	4 cut(s)	174, 188, 533, 1346
BtgZI	GCGATG	3 cut(s)	701, 780, 788
BtsCI	GGATG	5 cut(s)	337, 604, 613, 798, 1144
BtsIMutI	CAGTG	1 cut(s)	896
BveI	ACCTGC	1 cut(s)	1302
Cac8I	GCNNGC	3 cut(s)	504, 880, 1344
Cfr13I	GGNCC	1 cut(s)	1216
CseI	GACGC	1 cut(s)	1439
CsiI	ACCWGGT	1 cut(s)	709
Csp6I	GTAC	7 cut(s)	223, 230, 376, 839, 956, 1142, 1674
CspCI	CAANNNNNGTGG	2 cut(s)	1078, 1113
CviQI	GTAC	7 cut(s)	223, 230, 376, 839, 956, 1142, 1674
DdeI	CTNAG	6 cut(s)	86, 294, 407, 492, 874, 1014
DpnI	GATC	6 cut(s)	1034, 1175, 1206, 1493, 1629, 1638
DpnII	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
DraI	TTTAAA	3 cut(s)	153, 891, 1660
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	1226
EarI	CTCTTC	1 cut(s)	1226
Eco130I	CCWWGG	1 cut(s)	904
Eco147I	AGGCCT	1 cut(s)	1346
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	1216
Eco57I	CTGAAG	1 cut(s)	1009
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	4 cut(s)	116, 709, 1160, 1571
EcoT14I	CCWWGG	1 cut(s)	904
EcoT22I	ATGCAT	1 cut(s)	1699
ErhI	CCWWGG	1 cut(s)	904
FbaI	TGATCA	2 cut(s)	1173, 1204
FblI	GTMKAC	2 cut(s)	673, 1050
Fnu4HI	GCNGC	1 cut(s)	1011
FokI	GGATG	5 cut(s)	344, 611, 620, 805, 1131
Fsp4HI	GCNGC	1 cut(s)	1011
FspBI	CTAG	3 cut(s)	576, 741, 864
GluI	GCNGC	1 cut(s)	1011
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	4 cut(s)	174, 188, 533, 1346
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	1439
HinfI	GANTC	5 cut(s)	203, 1133, 1432, 1463, 1533
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	6 cut(s)	130, 313, 625, 665, 1435, 1561
Hpy166II	GTNNAC	3 cut(s)	674, 1051, 1119
Hpy188I	TCNGA	6 cut(s)	76, 1017, 1138, 1468, 1615, 1641
Hpy188III	TCNNGA	8 cut(s)	200, 448, 473, 815, 934, 1120, 1512, 1530
Hpy8I	GTNNAC	3 cut(s)	674, 1051, 1119
Hpy99I	CGWCG	1 cut(s)	1455
HpyAV	CCTTC	4 cut(s)	692, 783, 1012, 1401
HpyCH4III	ACNGT	4 cut(s)	196, 678, 1116, 1352
HpyCH4IV	ACGT	3 cut(s)	722, 731, 954
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 171, 180, 386, 875, 1208
HpyF3I	CTNAG	6 cut(s)	86, 294, 407, 492, 874, 1014
HpySE526I	ACGT	3 cut(s)	722, 731, 954
Kpn2I	TCCGGA	1 cut(s)	472
KpnI	GGTACC	2 cut(s)	233, 1677
Ksp22I	TGATCA	2 cut(s)	1173, 1204
Kzo9I	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	7 cut(s)	325, 673, 813, 1116, 1189, 1274, 1329
MabI	ACCWGGT	1 cut(s)	709
MaeI	CTAG	3 cut(s)	576, 741, 864
MaeII	ACGT	3 cut(s)	722, 731, 954
MaeIII	GTNAC	4 cut(s)	718, 753, 1156, 1369
MalI	GATC	6 cut(s)	1034, 1175, 1206, 1493, 1629, 1638
MboI	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
MboII	GAAGA	5 cut(s)	674, 1015, 1135, 1213, 1657
MlsI	TGGCCA	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	197, 1472
MmeI	TCCRAC	3 cut(s)	599, 891, 943
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	1699
MroI	TCCGGA	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	1022
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	6 cut(s)	152, 734, 890, 1251, 1356, 1659
MslI	CAYNNNNRTG	7 cut(s)	245, 651, 765, 980, 1124, 1149, 1440
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	4 cut(s)	118, 711, 1162, 1573
MssI	GTTTAAAC	1 cut(s)	1660
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	4 cut(s)	118, 711, 1162, 1573
MwoI	GCNNNNNNNGC	6 cut(s)	30, 171, 180, 386, 875, 1208
NdeII	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
NlaIV	GGNNCC	2 cut(s)	231, 1675
NmeAIII	GCCGAG	1 cut(s)	1559
NmuCI	GTSAC	1 cut(s)	1156
NsiI	ATGCAT	1 cut(s)	1699
NspI	RCATGY	5 cut(s)	310, 882, 985, 1189, 1697
OliI	CACNNNNGTG	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	882
PceI	AGGCCT	1 cut(s)	1346
PciI	ACATGT	1 cut(s)	981
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	3 cut(s)	1133, 1432, 1533
PflMI	CCANNNNNTGG	3 cut(s)	910, 1231, 1572
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	1012
PleI	GAGTC	2 cut(s)	197, 1471
PmeI	GTTTAAAC	1 cut(s)	1660
PpsI	GAGTC	2 cut(s)	197, 1471
PscI	ACATGT	1 cut(s)	981
Psp6I	CCWGG	4 cut(s)	116, 709, 1160, 1571
PspGI	CCWGG	4 cut(s)	116, 709, 1160, 1571
PspN4I	GGNNCC	2 cut(s)	231, 1675
PspPI	GGNCC	1 cut(s)	1216
PsrI	GAACNNNNNNTAC	2 cut(s)	1100, 1132
RsaI	GTAC	7 cut(s)	224, 231, 377, 840, 957, 1143, 1675
RsaNI	GTAC	7 cut(s)	223, 230, 376, 839, 956, 1142, 1674
RseI	CAYNNNNRTG	7 cut(s)	245, 651, 765, 980, 1124, 1149, 1440
SaqAI	TTAA	6 cut(s)	152, 734, 890, 1251, 1356, 1659
SatI	GCNGC	1 cut(s)	1011
Sau3AI	GATC	6 cut(s)	1032, 1173, 1204, 1491, 1627, 1636
Sau96I	GGNCC	1 cut(s)	1216
SchI	GAGTC	2 cut(s)	197, 1472
ScrFI	CCNGG	4 cut(s)	118, 711, 1162, 1573
SexAI	ACCWGGT	1 cut(s)	709
SfaNI	GCATC	7 cut(s)	325, 673, 813, 1116, 1189, 1274, 1329
SinI	GGWCC	1 cut(s)	1216
SmiMI	CAYNNNNRTG	7 cut(s)	245, 651, 765, 980, 1124, 1149, 1440
SpeI	ACTAGT	2 cut(s)	575, 863
SphI	GCATGC	1 cut(s)	882
SseBI	AGGCCT	1 cut(s)	1346
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	576, 741, 864
StuI	AGGCCT	1 cut(s)	1346
StyD4I	CCNGG	4 cut(s)	116, 709, 1160, 1571
StyI	CCWWGG	1 cut(s)	904
TaaI	ACNGT	4 cut(s)	196, 678, 1116, 1352
TaiI	ACGT	3 cut(s)	725, 734, 957
TaqI	TCGA	5 cut(s)	449, 528, 1453, 1494, 1635
TatI	WGTACW	1 cut(s)	1141
TfiI	GAWTC	3 cut(s)	1133, 1432, 1533
Tru1I	TTAA	6 cut(s)	152, 734, 890, 1251, 1356, 1659
Tru9I	TTAA	6 cut(s)	152, 734, 890, 1251, 1356, 1659
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	1 cut(s)	1156
TseI	GCWGC	1 cut(s)	1010
Tsp45I	GTSAC	1 cut(s)	1156
TspDTI	ATGAA	6 cut(s)	263, 470, 1125, 1424, 1430, 1658
TspRI	CASTG	1 cut(s)	903
Van91I	CCANNNNNTGG	3 cut(s)	910, 1231, 1572
VpaK11BI	GGWCC	1 cut(s)	1216
XapI	RAATTY	9 cut(s)	7, 77, 134, 250, 370, 967, 1402, 1456, 1483
XceI	RCATGY	5 cut(s)	310, 882, 985, 1189, 1697
XmiI	GTMKAC	2 cut(s)	673, 1050
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	3 cut(s)	576, 741, 864
Zsp2I	ATGCAT	1 cut(s)	1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.