RchiOBHm_Chr6g0301801

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008721
Physical Location & Seq
Reverse (-)
62102643 .. 62107565
4923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27108

Sequence Viewer

Length: 2817 bp
ATGAATACGATTGGCCAGATGCTCTTCCACAATCCACTCACTGTCCAGCGAGTTCCACAGGGATCACACACCCTGCAATCTCCTCAATCTTTGCTTCGCTCTCTCCGGGAAAGATCAAATCTTTTACAGCTCCATCTTCCAAAAATGGAGAATTTCACTCTCCCATGCAAATCAAACCCTCTCATTCCCATAATACCCTCCAAACCAGGCAACCCATCAGACTTCTCACCCAGACCCACCAAGCCCACCATCACTTTCTCCAGGAAAACCCGCCCAAATCCACCCGTAGACAATTTGAACCTCCTCTGCAAGAACGGCCAGTTCACGGAGGCCATGGCCGTTCTCGACTCCCTTGCCCAAAGTGGGTCCAAGGTACCGCCCACTACTTACATGAACTTACTTGAGTGCTGCATTGACACAAATTCTATTCAACTGGGCCGGAAGCTCCATCAGAATATTGATGTGGTTGATGAAGTGAACCCCTTTGTGGAGACCAAGCTGGTGAGCATGTACGCGAAATGTGGGTTCTTGGAAGATGCACGCAAGGTGTTCGACGGAATGCGTGAGAGGAATTTGTACTCTTGGTCGGCCATGATCGGTGCGTGTCTCAGAGACCGGAGGTGGAATGAGGTGGTGGAGCTTTTTGTGTTGATGGTGAGAGACGGAGTTTTGCCGGATTACTTTCTGTTTCCGAAGGTGTTGCAGGCCTGTGGGAACTGTTGTGATTTCGAGGCCTTGAAAATGATACATTCCATGGTGGTGAGGTGCAATTTGAGTGGTACTATACATATAAACAATTCGTTATTGGCGGTTTACGCCAAGTGTGGGAAGTTGAAGTGGGCGAGGAAGTTTTTTGAGAAAATGGAAGTGAGGGATGGGGTGACTTGGAACACAATTATATCTGGTTATTGCCAGAATGGTGAGAATGAAGAAGCTCGGAGGCTGATTGATGCAATGATCAAACAGGGGATTGAACCGGGGTTGGTCACTTGGAATATATTGATTTCTAGTTTTAATAAGTCGGGGCAGTGTGATGTTGCGATGGAACTGATGAAGAAGATGGAGAACTCTGGGATCACTCCTGATGTGTATACTTGGACTTCTATGATTTCGGGGTTTGCTCAGAACAACAGGACGAATCAGGCTTTGGATTTGTGGAAGAAGATGCTTTTGTCAGGGGTACAACCAAATGGCATTACGATTGCTAGTGCAATCTCAGCTTGCACATCTTTGAAATCACTGACCAAAGGTTTGGAAATTTATGCTTTTGCTGTGAAGATGGGACTCATTGATGATGTACTCATTGGAAATTCGCTCATTGACATGTTTTCAAAGTGTGGGGACCTGGAAGCTGCTGAGCAAATCTTTACTATGATCTCAGATAAAGACGTCTACACTTGGAACTCCATGATAGGAGGATATTGCCAAGCTAGGTACTGTGGTAAGGCCTATGAACTGTTCATGAAGATGCAGGAATCAGATGTACATCCTAATGCCATCACGTATAATGTGATGATCACAGGGTACATTCAGAATGGAGATGCTGATCAAGCAATGGATCTCTTCCAAATGATGGAACGAGATGGGAAAGTTAAGCGGAATACAGCTTCGTGGAACTCTCTTATTGCTGGTTTTGCTCAACTTGGGGAAATAAATGAGGCACTTAGGATATTCAGGAAGATGCAGACCTTCAGTGTTAGCCCCAATTCAGTTACTTTGTTGAGTATCCTGCCCGCTTGTGGGAGTTTAGTTGCCATGAAAAAGGTGAAAGAGATCCATTGTAGTGTATTTCGAAGAAATTTGGAGTCTGAAGTCCCTGTTGCAAATTCTCTGATAGACACATATGCAAAATCAGGAAACATAGAGTATTCAAGAACCATATTCGATAGACTGTCATCGAAAGATATTATTACCTGGAACTCAGCAATTTCTGGTTATGTTTTACATGGTCATCCAGATATTGCACTTGATCTTTTTGATCAGATGAAGAAGTTGGGGCTAAAACCAAATAGAGGTACCTTTGCCAGTATTCTATATGCCTACAGTCTTGCTGGACTGGTAAACGAGGGGACAGAAGCTCTTTCTAGCATCAGTGAAGACTATCAAATAATACCAGGTCCAGAACATTATTCAGCTATTGTAGACCTATATGGACGTTCGGGTAGGCTTCAAGCAGCAATGGGGTTTATTGAAGATATGCCGATAGAACCAGACTCCTCTGTTTGGGCTGCCTTACTTACAGCATGCAGGATTCATGGGAACCTTGGCTTGGCAATTCATGCAGGGGAGCGCTTAATTGACTTGGAACCAGCGAATGTTCTGATTCAACAGTTTTTATTACAGGCATATGCTTTATCTGGGAAGCCGGATGATACCTCAAAGTTGAGAAGGTTTGGAAAAGAGAATGCAACAATAAAGAGATCTCTTGGTCAGTGCTGGATGGAAGTCAAAAACACAGTGCATACGTTTGTTGCAGGTGATAGGTCGAAATTATGCTCAAAGTATGTAAACTCGTGGTTACAAGACATAGCAGAAAAGGCAAAAGGACCTGGTTTTCGTTGTGCGCTTGGTGTTGAGGATGAAGAGGAGGGAATCAGCATGGTCCACAGTGAAAAACTTGCCCTGGCTTTTGCTCTCATTGGCTCTCCATCTTTACCCAAAAGTATCAGGATAGTAAAAAATCTGAGAATGTGTGGAGATTGCCACAGGACAGCTAAATATATATCAATGGCTTTTGGATGTGATATATATTTAAGTGATTCAAAGTCCTTACACCATTTTAGCAATGGGCGTTGTTCTTGTGGCGATTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

938

Amino Acids

104.56

Weight (kDa)

8.11

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 292 - 330 6.6e-10 PPR repeat family
PPR_3 PF13812 292 - 338 7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 292 - 319 4.1e-08 PPR repeat
PPR PF01535 294 - 324 1.9e-08 PPR repeat
PPR_1 PF12854 323 - 355 2.2e-06 PPR repeat
PPR_2 PF13041 326 - 374 3.9e-14 PPR repeat family
PPR PF01535 329 - 359 7.4e-07 PPR repeat
PPR_3 PF13812 350 - 408 1.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 358 - 389 7.2e-08 PPR repeat
PPR_2 PF13041 361 - 408 1.1e-10 PPR repeat family
PPR PF01535 364 - 394 1.1e-06 PPR repeat
PPR_2 PF13041 462 - 509 7.5e-15 PPR repeat family
PPR_3 PF13812 463 - 509 1.2e-06 Pentatricopeptide repeat domain
PPR PF01535 465 - 494 5.9e-08 PPR repeat
PPR_long PF17177 481 - 589 1.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 495 - 526 5.1e-07 PPR repeat
PPR_2 PF13041 497 - 529 1.5e-07 PPR repeat family
PPR PF01535 500 - 529 4.8e-08 PPR repeat
TPR_24 PF23276 511 - 622 2.6e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 534 - 580 5.4e-09 PPR repeat family
PPR PF01535 537 - 564 2.4e-06 PPR repeat
PPR_2 PF13041 634 - 680 8.6e-11 PPR repeat family
PPR_3 PF13812 635 - 681 1.2e-06 Pentatricopeptide repeat domain
PPR PF01535 637 - 667 4e-07 PPR repeat
DYW_deaminase PF14432 859 - 938 8.7e-27 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2465
AatII GACGTC 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 2465
Acc65I GGTACC 2 cut(s) 373, 2015
AccB1I GGYRCC 2 cut(s) 373, 2015
AccB7I CCANNNNNTGG 1 cut(s) 1573
AccI GTMKAC 4 cut(s) 288, 1091, 1392, 2142
AccII CGCG 1 cut(s) 515
AciI CCGC 5 cut(s) 271, 377, 809, 1597, 1734
AclWI GGATC 4 cut(s) 70, 1082, 1566, 1768
AcoI YGGCCR 4 cut(s) 13, 316, 336, 588
AcsI RAATTY 7 cut(s) 151, 421, 571, 1257, 1309, 1798, 1825
AcuI CTGAAG 2 cut(s) 1675, 1830
AcyI GRCGYC 1 cut(s) 1389
AfeI AGCGCT 1 cut(s) 2291
AflIII ACRYGT 1 cut(s) 1323
AjnI CCWGG 7 cut(s) 205, 260, 1344, 1913, 2113, 2548, 2622
AjuI GAANNNNNNNTTGG 4 cut(s) 1130, 1162, 2252, 2284
Alw26I GTCTC 4 cut(s) 485, 606, 611, 654
AlwI GGATC 4 cut(s) 70, 1082, 1566, 1768
Aor51HI AGCGCT 1 cut(s) 2291
AoxI GGCC 9 cut(s) 13, 316, 330, 336, 436, 588, 705, 732, 1446
ApeKI GCWGC 4 cut(s) 408, 1352, 2174, 2228
ApoI RAATTY 7 cut(s) 151, 421, 571, 1257, 1309, 1798, 1825
ArsI GACNNNNNNTTYG 4 cut(s) 1234, 1266, 2538, 2570
Asp718I GGTACC 2 cut(s) 373, 2015
AspLEI GCGC 2 cut(s) 2292, 2566
AspS9I GGNCC 6 cut(s) 366, 436, 1342, 2117, 2546, 2602
AsuC2I CCSGG 2 cut(s) 107, 978
AsuHPI GGTGA 8 cut(s) 219, 514, 667, 772, 892, 932, 1777, 2489
AsuII TTCGAA 1 cut(s) 1792
AvaII GGWCC 5 cut(s) 366, 1342, 2117, 2546, 2602
BaeI ACNNNNGTAYC 2 cut(s) 1426, 1459
BalI TGGCCA 1 cut(s) 15
BanI GGYRCC 2 cut(s) 373, 2015
BauI CACGAG 1 cut(s) 2512
BbsI GAAGAC 1 cut(s) 2103
BbvI GCAGC 4 cut(s) 395, 1339, 2186, 2215
BceAI ACGGC 2 cut(s) 323, 331
BcgI CGANNNNNNTGC 6 cut(s) 335, 369, 532, 566, 682, 716
BciT130I CCWGG 7 cut(s) 207, 262, 1346, 1915, 2115, 2550, 2624
BciVI GTATCC 1 cut(s) 1736
BclI TGATCA 4 cut(s) 957, 1515, 1546, 1978
BcnI CCSGG 2 cut(s) 107, 978
BcoDI GTCTC 4 cut(s) 485, 606, 611, 654
BfaI CTAG 4 cut(s) 1008, 1206, 1431, 2085
BfmI CTRYAG 1 cut(s) 2041
BfoI RGCGCY 1 cut(s) 2293
BfuAI ACCTGC 1 cut(s) 2465
BfuI GTATCC 1 cut(s) 1736
BglII AGATCT 1 cut(s) 2420
BisI GCNGC 4 cut(s) 409, 1353, 2175, 2229
BlpI GCTNAGC 1 cut(s) 1356
BlsI GCNGC 4 cut(s) 410, 1354, 2176, 2230
Bme1390I CCNGG 9 cut(s) 107, 207, 262, 978, 1346, 1915, 2115, 2550, 2624
Bme18I GGWCC 5 cut(s) 366, 1342, 2117, 2546, 2602
BmgT120I GGNCC 6 cut(s) 366, 436, 1342, 2117, 2546, 2602
BmiI GGNNCC 6 cut(s) 367, 375, 1343, 2017, 2261, 2307
BmrFI CCNGG 9 cut(s) 107, 207, 262, 978, 1346, 1915, 2115, 2550, 2624
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 8 cut(s) 9, 526, 940, 1155, 1458, 1531, 1671, 2097
BmuI ACTGGG 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 2103
BpmI CTGGAG 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 1356
Bpu14I TTCGAA 1 cut(s) 1792
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 107, 978
BsaAI YACGTR 1 cut(s) 1503
BsaBI GATNNNNATC 2 cut(s) 1485, 1545
BsaHI GRCGYC 1 cut(s) 1389
BsaI GGTCTC 2 cut(s) 485, 606
BsaJI CCNNGG 6 cut(s) 333, 369, 753, 977, 2263, 2622
BsaWI WCCGGW 1 cut(s) 615
Bse1I ACTGG 4 cut(s) 319, 438, 2025, 2061
Bse3DI GCAATG 4 cut(s) 960, 1560, 2184, 2791
Bse8I GATNNNNATC 2 cut(s) 1485, 1545
BseBI CCWGG 7 cut(s) 207, 262, 1346, 1915, 2115, 2550, 2624
BseDI CCNNGG 6 cut(s) 333, 369, 753, 977, 2263, 2622
BseGI GGATG 7 cut(s) 880, 1486, 1951, 2374, 2445, 2584, 2744
BseJI GATNNNNATC 2 cut(s) 1485, 1545
BseMI GCAATG 4 cut(s) 960, 1560, 2184, 2791
BseMII CTCAG 7 cut(s) 622, 1136, 1230, 1347, 1392, 1935, 2675
BseNI ACTGG 4 cut(s) 319, 438, 2025, 2061
BseRI GAGGAG 4 cut(s) 72, 293, 2206, 2600
BseXI GCAGC 4 cut(s) 395, 1339, 2186, 2215
Bsh1236I CGCG 1 cut(s) 515
BshFI GGCC 9 cut(s) 15, 318, 332, 338, 438, 590, 707, 734, 1448
BshNI GGYRCC 2 cut(s) 373, 2015
BsiSI CCGG 6 cut(s) 106, 439, 616, 674, 977, 2366
BslFI GGGAC 4 cut(s) 1296, 1355, 1799, 2083
BsmAI GTCTC 4 cut(s) 485, 606, 611, 654
BsmBI CGTCTC 1 cut(s) 654
BsmFI GGGAC 4 cut(s) 1296, 1355, 1799, 2083
BsmI GAATGC 2 cut(s) 564, 2410
BsnI GGCC 9 cut(s) 15, 318, 332, 338, 438, 590, 707, 734, 1448
Bso31I GGTCTC 2 cut(s) 485, 606
Bsp119I TTCGAA 1 cut(s) 1792
Bsp1407I TGTACA 1 cut(s) 1483
Bsp1720I GCTNAGC 1 cut(s) 1356
Bsp19I CCATGG 2 cut(s) 333, 753
BspACI CCGC 5 cut(s) 271, 377, 809, 1597, 1734
BspANI GGCC 9 cut(s) 15, 318, 332, 338, 438, 590, 707, 734, 1448
BspCNI CTCAG 7 cut(s) 621, 1135, 1229, 1348, 1391, 1934, 2676
BspFNI CGCG 1 cut(s) 515
BspHI TCATGA 1 cut(s) 1461
BspLI GGNNCC 6 cut(s) 367, 375, 1343, 2017, 2261, 2307
BspMI ACCTGC 1 cut(s) 2465
BspPI GGATC 4 cut(s) 70, 1082, 1566, 1768
BspQI GCTCTTC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 1792
BspT107I GGYRCC 2 cut(s) 373, 2015
BspTNI GGTCTC 2 cut(s) 485, 606
BsrDI GCAATG 4 cut(s) 960, 1560, 2184, 2791
BsrGI TGTACA 1 cut(s) 1483
BsrI ACTGG 4 cut(s) 319, 438, 2025, 2061
BssECI CCNNGG 6 cut(s) 333, 369, 753, 977, 2263, 2622
BssNAI GTATAC 1 cut(s) 1092
BssNI GRCGYC 1 cut(s) 1389
BssSI CACGAG 1 cut(s) 2512
BssT1I CCWWGG 4 cut(s) 333, 369, 753, 2263
Bst1107I GTATAC 1 cut(s) 1092
Bst2BI CACGAG 1 cut(s) 2512
Bst2UI CCWGG 7 cut(s) 207, 262, 1346, 1915, 2115, 2550, 2624
Bst4CI ACNGT 9 cut(s) 43, 719, 1439, 1458, 1893, 2045, 2331, 2458, 2609
Bst6I CTCTTC 3 cut(s) 29, 1568, 2577
BstACI GRCGYC 1 cut(s) 1389
BstAPI GCANNNNNTGC 1 cut(s) 2279
BstAUI TGTACA 1 cut(s) 1483
BstBAI YACGTR 1 cut(s) 1503
BstBI TTCGAA 1 cut(s) 1792
BstC8I GCNNGC 5 cut(s) 541, 705, 1222, 1734, 2245
BstDEI CTNAG 8 cut(s) 608, 1122, 1216, 1356, 1378, 1664, 1921, 2684
BstDSI CCRYGG 2 cut(s) 333, 753
BstF5I GGATG 7 cut(s) 880, 1486, 1951, 2374, 2445, 2584, 2744
BstFNI CGCG 1 cut(s) 515
BstH2I RGCGCY 1 cut(s) 2293
BstHHI GCGC 2 cut(s) 2292, 2566
BstMAI GTCTC 4 cut(s) 485, 606, 611, 654
BstMWI GCNNNNNNNGC 7 cut(s) 315, 815, 1217, 1550, 1634, 2279, 2537
BstNI CCWGG 7 cut(s) 207, 262, 1346, 1915, 2115, 2550, 2624
BstNSI RCATGY 3 cut(s) 511, 1327, 2247
BstSCI CCNGG 9 cut(s) 105, 205, 260, 976, 1344, 1913, 2113, 2548, 2622
BstSFI CTRYAG 1 cut(s) 2041
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 4 cut(s) 395, 1339, 2186, 2215
BstV2I GAAGAC 1 cut(s) 2103
BstX2I RGATCY 3 cut(s) 1558, 1773, 2420
BstXI CCANNNNNNTGG 1 cut(s) 1252
BstYI RGATCY 3 cut(s) 1558, 1773, 2420
BstZ17I GTATAC 1 cut(s) 1092
BsuI GTATCC 1 cut(s) 1736
BsuRI GGCC 9 cut(s) 15, 318, 332, 338, 438, 590, 707, 734, 1448
BtgI CCRYGG 2 cut(s) 333, 753
BtgZI GCGATG 1 cut(s) 1055
BtsCI GGATG 7 cut(s) 880, 1486, 1951, 2374, 2445, 2584, 2744
BtsI GCAGTG 1 cut(s) 1034
BtsIMutI CAGTG 8 cut(s) 39, 1034, 1238, 1699, 2098, 2438, 2463, 2614
BveI ACCTGC 1 cut(s) 2465
Cac8I GCNNGC 5 cut(s) 541, 705, 1222, 1734, 2245
CciI TCATGA 1 cut(s) 1461
CfoI GCGC 2 cut(s) 2292, 2566
Cfr13I GGNCC 6 cut(s) 366, 436, 1342, 2117, 2546, 2602
CsiI ACCWGGT 2 cut(s) 2113, 2548
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
DdeI CTNAG 8 cut(s) 608, 1122, 1216, 1356, 1378, 1664, 1921, 2684
EaeI YGGCCR 4 cut(s) 13, 316, 336, 588
Eam1104I CTCTTC 3 cut(s) 29, 1568, 2577
EarI CTCTTC 3 cut(s) 29, 1568, 2577
Eco130I CCWWGG 4 cut(s) 333, 369, 753, 2263
Eco147I AGGCCT 3 cut(s) 707, 734, 1448
Eco31I GGTCTC 2 cut(s) 485, 606
Eco47I GGWCC 5 cut(s) 366, 1342, 2117, 2546, 2602
Eco47III AGCGCT 1 cut(s) 2291
Eco57I CTGAAG 2 cut(s) 1675, 1830
EcoO109I RGGNCCY 2 cut(s) 1342, 2546
EcoRII CCWGG 7 cut(s) 205, 260, 1344, 1913, 2113, 2548, 2622
EcoT14I CCWWGG 4 cut(s) 333, 369, 753, 2263
ErhI CCWWGG 4 cut(s) 333, 369, 753, 2263
Esp3I CGTCTC 1 cut(s) 654
FaqI GGGAC 4 cut(s) 1296, 1355, 1799, 2083
FauI CCCGC 2 cut(s) 278, 1741
FauNDI CATATG 2 cut(s) 1843, 2347
FbaI TGATCA 4 cut(s) 957, 1515, 1546, 1978
FblI GTMKAC 4 cut(s) 288, 1091, 1392, 2142
Fnu4HI GCNGC 4 cut(s) 409, 1353, 2175, 2229
FokI GGATG 7 cut(s) 887, 1473, 1938, 2381, 2452, 2591, 2751
Fsp4HI GCNGC 4 cut(s) 409, 1353, 2175, 2229
FspBI CTAG 4 cut(s) 1008, 1206, 1431, 2085
GlaI GCGC 2 cut(s) 2291, 2565
GluI GCNGC 4 cut(s) 409, 1353, 2175, 2229
GsuI CTGGAG 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 2293
HaeIII GGCC 9 cut(s) 15, 318, 332, 338, 438, 590, 707, 734, 1448
HapII CCGG 6 cut(s) 106, 439, 616, 674, 977, 2366
HhaI GCGC 2 cut(s) 2292, 2566
Hin1I GRCGYC 1 cut(s) 1389
Hin6I GCGC 2 cut(s) 2290, 2564
HinP1I GCGC 2 cut(s) 2290, 2564
HpaII CCGG 6 cut(s) 106, 439, 616, 674, 977, 2366
HphI GGTGA 8 cut(s) 219, 514, 667, 772, 892, 932, 1777, 2489
Hpy188III TCNNGA 9 cut(s) 344, 1082, 1462, 1675, 1854, 1872, 1955, 2120, 2668
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 3 cut(s) 688, 1699, 2382
HpyCH4III ACNGT 9 cut(s) 43, 719, 1439, 1458, 1893, 2045, 2331, 2458, 2609
HpyCH4IV ACGT 4 cut(s) 1389, 1502, 2155, 2465
HpyF10VI GCNNNNNNNGC 7 cut(s) 315, 815, 1217, 1550, 1634, 2279, 2537
HpyF3I CTNAG 8 cut(s) 608, 1122, 1216, 1356, 1378, 1664, 1921, 2684
HpySE526I ACGT 4 cut(s) 1389, 1502, 2155, 2465
Hsp92I GRCGYC 1 cut(s) 1389
HspAI GCGC 2 cut(s) 2290, 2564
KpnI GGTACC 2 cut(s) 377, 2019
Ksp22I TGATCA 4 cut(s) 957, 1515, 1546, 1978
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 4 cut(s) 135, 450, 637, 2287
Lsp1109I GCAGC 4 cut(s) 395, 1339, 2186, 2215
LweI GCATC 8 cut(s) 9, 526, 940, 1155, 1458, 1531, 1671, 2097
MabI ACCWGGT 2 cut(s) 2113, 2548
MaeI CTAG 4 cut(s) 1008, 1206, 1431, 2085
MaeII ACGT 4 cut(s) 1389, 1502, 2155, 2465
MaeIII GTNAC 4 cut(s) 880, 985, 1711, 2517
MflI RGATCY 3 cut(s) 1558, 1773, 2420
MlsI TGGCCA 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 4 cut(s) 341, 1278, 1814, 2207
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 4 cut(s) 1014, 1593, 2294, 2753
MslI CAYNNNNRTG 5 cut(s) 758, 1322, 1466, 1491, 1782
Msp20I TGGCCA 1 cut(s) 15
MspI CCGG 6 cut(s) 106, 439, 616, 674, 977, 2366
MspR9I CCNGG 9 cut(s) 107, 207, 262, 978, 1346, 1915, 2115, 2550, 2624
Mva1269I GAATGC 2 cut(s) 564, 2410
MvaI CCWGG 7 cut(s) 207, 262, 1346, 1915, 2115, 2550, 2624
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 7 cut(s) 315, 815, 1217, 1550, 1634, 2279, 2537
NciI CCSGG 2 cut(s) 107, 978
NcoI CCATGG 2 cut(s) 333, 753
NdeI CATATG 2 cut(s) 1843, 2347
NlaIV GGNNCC 6 cut(s) 367, 375, 1343, 2017, 2261, 2307
NmuCI GTSAC 2 cut(s) 880, 985
NspI RCATGY 3 cut(s) 511, 1327, 2247
NspV TTCGAA 1 cut(s) 1792
PaeI GCATGC 1 cut(s) 2247
PagI TCATGA 1 cut(s) 1461
PaqCI CACCTGC 1 cut(s) 2465
PceI AGGCCT 3 cut(s) 707, 734, 1448
PciI ACATGT 1 cut(s) 1323
PciSI GCTCTTC 1 cut(s) 29
PctI GAATGC 2 cut(s) 564, 2410
PfeI GAWTC 6 cut(s) 1138, 1475, 2251, 2323, 2592, 2759
PflMI CCANNNNNTGG 1 cut(s) 1573
PfoI TCCNGGA 2 cut(s) 105, 260
PkrI GCNGC 4 cut(s) 410, 1354, 2176, 2230
PleI GAGTC 4 cut(s) 341, 1278, 1813, 2207
PpsI GAGTC 4 cut(s) 341, 1278, 1813, 2207
Ppu21I YACGTR 1 cut(s) 1503
PpuMI RGGWCCY 2 cut(s) 1342, 2546
PscI ACATGT 1 cut(s) 1323
Psp5II RGGWCCY 2 cut(s) 1342, 2546
Psp6I CCWGG 7 cut(s) 205, 260, 1344, 1913, 2113, 2548, 2622
PspGI CCWGG 7 cut(s) 205, 260, 1344, 1913, 2113, 2548, 2622
PspN4I GGNNCC 6 cut(s) 367, 375, 1343, 2017, 2261, 2307
PspPI GGNCC 6 cut(s) 366, 436, 1342, 2117, 2546, 2602
PspPPI RGGWCCY 2 cut(s) 1342, 2546
PsuI RGATCY 3 cut(s) 1558, 1773, 2420
RseI CAYNNNNRTG 5 cut(s) 758, 1322, 1466, 1491, 1782
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 1014, 1593, 2294, 2753
SatI GCNGC 4 cut(s) 409, 1353, 2175, 2229
Sau96I GGNCC 6 cut(s) 366, 436, 1342, 2117, 2546, 2602
SchI GAGTC 4 cut(s) 341, 1278, 1814, 2207
ScrFI CCNGG 9 cut(s) 107, 207, 262, 978, 1346, 1915, 2115, 2550, 2624
SexAI ACCWGGT 2 cut(s) 2113, 2548
SfaNI GCATC 8 cut(s) 9, 526, 940, 1155, 1458, 1531, 1671, 2097
SfcI CTRYAG 1 cut(s) 2041
SfuI TTCGAA 1 cut(s) 1792
SinI GGWCC 5 cut(s) 366, 1342, 2117, 2546, 2602
SmiMI CAYNNNNRTG 5 cut(s) 758, 1322, 1466, 1491, 1782
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 2247
SseBI AGGCCT 3 cut(s) 707, 734, 1448
SsiI CCGC 5 cut(s) 271, 377, 809, 1597, 1734
SspI AATATT 1 cut(s) 457
SspMI CTAG 4 cut(s) 1008, 1206, 1431, 2085
StuI AGGCCT 3 cut(s) 707, 734, 1448
StyD4I CCNGG 9 cut(s) 105, 205, 260, 976, 1344, 1913, 2113, 2548, 2622
StyI CCWWGG 4 cut(s) 333, 369, 753, 2263
TaaI ACNGT 9 cut(s) 43, 719, 1439, 1458, 1893, 2045, 2331, 2458, 2609
TaiI ACGT 4 cut(s) 1392, 1505, 2158, 2468
TaqI TCGA 7 cut(s) 345, 552, 729, 1792, 1884, 1898, 2486
TatI WGTACW 3 cut(s) 576, 1297, 1483
TfiI GAWTC 6 cut(s) 1138, 1475, 2251, 2323, 2592, 2759
Tru1I TTAA 4 cut(s) 1014, 1593, 2294, 2753
Tru9I TTAA 4 cut(s) 1014, 1593, 2294, 2753
TscAI CASTG 8 cut(s) 46, 1034, 1245, 1699, 2098, 2438, 2463, 2614
TseFI GTSAC 2 cut(s) 880, 985
TseI GCWGC 4 cut(s) 408, 1352, 2174, 2228
Tsp45I GTSAC 2 cut(s) 880, 985
TspGWI ACGGA 3 cut(s) 341, 570, 678
TspRI CASTG 8 cut(s) 46, 1034, 1245, 1699, 2098, 2438, 2463, 2614
Van91I CCANNNNNTGG 1 cut(s) 1573
VpaK11BI GGWCC 5 cut(s) 366, 1342, 2117, 2546, 2602
XapI RAATTY 7 cut(s) 151, 421, 571, 1257, 1309, 1798, 1825
XceI RCATGY 3 cut(s) 511, 1327, 2247
XcmI CCANNNNNNNNNTGG 1 cut(s) 2783
XmiI GTMKAC 4 cut(s) 288, 1091, 1392, 2142
XspI CTAG 4 cut(s) 1008, 1206, 1431, 2085
ZraI GACGTC 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.