Rh6BG428400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008721
Physical Location & Seq
Reverse (-)
64910168 .. 64915187
5020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG428400.1

Sequence Viewer

Length: 2661 bp
ATGGAGAATTTCACTCTCCCATGCCAATCAAACCCTCTCATTCCCATAATACCCTCCAAACCAGGCAACCCATCAAGACCCGCCAAGCCCACCGTCACTTTCTCCAGGAAAACCCGCCCAAATCCACCCGTAGACAATTTGAACCTCCTCTGCAGGAACGGCCAGTTCACCGAGGCCATCGCCGTTCTCAACTCCCTTGCCCAAAGTGGGTCCAAGGTACCGCCCACTACTTACATGAACTTACTTCAGTGCTGCATTGACACCAATTCTATTCAACTGGGCCGGAAGCTCCATCAGAATATTGATGTGGTTGATAAGGTGAACCCCTTTGTGGAGACCAAGCTGGTGAGCATGTACGCGAAATGTGGCTTCTTGGAAGATGCACGCAAGGTGTTCGACGGAATGCGTGAGAGGAATTTGTACTCTTGGTCGGCCATGATCGGTGCGTGTCTCAGAGACCGGAGGTGGAATGAGGTGGTGGAGCTTTTTGTGTTGATGGTGAGAGACGGAGTTTTGCCGGATTACTTTCTGTTTCCGAAGGTGTTGCAGGCCTGTGGGAACTGTTGTGATTTCGAGGCCTCGAAAATGATACATTCCATGGTGGTGAGGTGCAATTTGAGCGGGACTATACATATAAACAATTCGGTATTGGCGGTTTACGCCAAGTGTGGGAAGTTGAAGTGGGCGAGGAAGTTTTTTGAGAAAATGCAGGTGAGGGATGGGGTGAGTTGGAACACTATTATATCTGGTTATTGCCAGAATGGTGAGAATGAAGAAGCTCGGAGGCTGATTGATGCAATGATCAAACAGGGGATTGAACCGGGGTTGGTCACTTGGAATATATTGATTTCTAGTTTTAATAAGTCGGGGCAGTGTGATGTTGCGATGGAACTGATGAAGAAGATGGACAACTGTGGGATCACTCCTGATGTGTATACTTGGACTTCTATGATTTCGGGGTTTGCTCAGAACAACAGGACGAATCAGGCATTGGATTTGTGGAAGAAGATGCTTTTGTCAGGGGTACAACCAAATGGCATTACTATTGCTAGTGCAATCTCAGCTTGCACATCTTTGAAATCACTGACCAAAGGTTTGGAAATTTATGCTTTTGCTGTGAAGATGGGACTCATTGATGATGTACTCATTGGAAATTCGCTCATTGACATGTTTTCAAAGTGTGGGGACCTGGCAGCTGCTGAGCAAGTCTTTACTATGATCTCAGATAAAGACGTCTACACTTGGAACTCCATGATAGGAGGATATTGCCAAGCTAGGTACTGTGGTAAGGCCTATGAACTGTTCATGAAGATGCAGGAATCAGATGTACATCCTAATGCCATCACGTATAATGTGATGATCACAGGGTACATTCAGAATGGAGATGCTGATCAAGCAATGGATCTCTTCCAAATGATGGAACGAGATGGGAAAGTTAAGCGGAATACAGCATCGTGGAACTCTCTTATTGCTGGTTTTGCTCAACTTGGGGAAATAAATGAGGCACTTAGGATATTCAGGAAGATGCAGGCCTTCAGTGTTAGGCCCAATTCAGTTACTTTGTTGAGTATCCTGCCCGCTTGTGGGAGTTTAGTTGCCATGAAAAAGGTGAAAGAGATCCATGGTAGTGTATTTCGAAGAAATTTGGAGTCTGAAGTCCCTGTTGCAAATTCTCTGATAGACACATATGCAAAATCAGGAAACATAGAGTATTCAAGAACCATATTTGATAGACTGTCATCGAAAGATATTATTACCTGGAACTCGGCAATTTCTGGTTATGTTTTACATGGTCATCCAGATATTGCACTTGATCTTTTTGACCAGATGAAGAAGTTGGGGCTAAAACCAAATAGAGGTACCTTTGCTAGTATTCTATATGCCTACAGTCTTGCTGGACTGGTAAACGAGGGGACAGAAGCTCTTTCTAGCATCAGTGAAGACTATCAAATAATACCGGGTCCAGAACATTATTCAGCTATTGTAGACCTATATGGACGTTCGGGTAGGCTTCAAGCAGCAATGGGGTTTATTGAAGATATGCCGATAGAACCAGACTCCTCTGTTTGGGCTGCCTTACTTACAGCATGCAGGATTCATGGGAACCTTGGCTTGGCAATTCATGCAGGGGAGCGCTTAATTGACTTGGAACCAGCGAATGTTCTGATTCAACAGTTTTTATTACAGGCATATGCTTTATCCGGGAAGCCGGATGATACCTCAAAGTTGAGAAGGTTTGGAAAAGAGAATGCAACAATAAAAAGATCTCTTGGTCAGTGCTGGATGGAAGTCAACAACACAGTGCATACGTTTGTTGCAGGTGATAGGTCGAAATTATGCTCAAAGTATGTAAACTCGTGGTTACAAGACATAGCAGAAAAGGCAAAAGGACCTGGTTTTCGTTGTGGGCTTGGTGTTGAGGATGAAGAGGAGGGAATCAGCATGGTCCACAGTGAAAAACTTGCACTTGCTTTTGCTCTCATTGGCTCTCCATCTCTACCCAAAAGTATCAGGATAGTAAAAGATCTGAGAATGTGTGGAGATTGCCACAGGACAGCTAAATATATATCAATCGCTTTTGGATGTGATATATATTTAAGTGATTCAAAGTCCTTACACTATTTTAGCAATGGGCGTTGTTCTTGTGGCGATTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

886

Amino Acids

98.43

Weight (kDa)

8.2

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 240 - 278 1.9e-09 PPR repeat family
PPR_3 PF13812 240 - 286 3.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 240 - 267 4.4e-07 PPR repeat
PPR PF01535 242 - 272 3.8e-08 PPR repeat
PPR_1 PF12854 271 - 302 5e-06 PPR repeat
PPR_2 PF13041 274 - 322 2.3e-13 PPR repeat family
PPR PF01535 277 - 307 2.5e-06 PPR repeat
PPR_3 PF13812 298 - 356 4.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 306 - 337 9e-08 PPR repeat
PPR_2 PF13041 309 - 356 1e-10 PPR repeat family
PPR PF01535 312 - 342 1e-06 PPR repeat
PPR_2 PF13041 410 - 457 7e-15 PPR repeat family
PPR_3 PF13812 411 - 457 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 413 - 442 5.6e-08 PPR repeat
PPR_long PF17177 429 - 533 4.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 443 - 474 4.8e-07 PPR repeat
PPR_2 PF13041 445 - 477 1.4e-07 PPR repeat family
PPR PF01535 448 - 477 4.5e-08 PPR repeat
TPR_24 PF23276 459 - 570 3.6e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 482 - 528 8.4e-09 PPR repeat family
PPR PF01535 485 - 511 2.6e-06 PPR repeat
PPR_2 PF13041 582 - 628 8.1e-11 PPR repeat family
PPR_3 PF13812 583 - 629 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 585 - 615 3.8e-07 PPR repeat
DYW_deaminase PF14432 807 - 886 1.6e-24 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 700, 2309
AatII GACGTC 1 cut(s) 1236
Acc36I ACCTGC 2 cut(s) 700, 2309
Acc65I GGTACC 2 cut(s) 217, 1859
AccB1I GGYRCC 2 cut(s) 217, 1859
AccB7I CCANNNNNTGG 1 cut(s) 1417
AccBSI CCGCTC 1 cut(s) 621
AccI GTMKAC 4 cut(s) 132, 935, 1236, 1986
AccII CGCG 1 cut(s) 359
AciI CCGC 7 cut(s) 81, 115, 221, 621, 653, 1441, 1578
AclWI GGATC 3 cut(s) 926, 1410, 1612
AcoI YGGCCR 2 cut(s) 160, 432
AcsI RAATTY 6 cut(s) 7, 415, 1101, 1153, 1642, 1669
AcuI CTGAAG 3 cut(s) 230, 1519, 1674
AcyI GRCGYC 1 cut(s) 1233
AfaI GTAC 9 cut(s) 219, 356, 422, 1026, 1143, 1280, 1329, 1370, 1861
AfeI AGCGCT 1 cut(s) 2135
AfiI CCNNNNNNNGG 9 cut(s) 207, 331, 669, 1417, 1583, 1584, 1856, 2067, 2113
AflIII ACRYGT 1 cut(s) 1167
AjnI CCWGG 5 cut(s) 61, 104, 1188, 1757, 2392
AjuI GAANNNNNNNTTGG 4 cut(s) 974, 1006, 2096, 2128
Alw26I GTCTC 4 cut(s) 329, 450, 455, 498
AlwI GGATC 3 cut(s) 926, 1410, 1612
AlwNI CAGNNNCTG 1 cut(s) 1199
Aor51HI AGCGCT 1 cut(s) 2135
AoxI GGCC 9 cut(s) 160, 174, 280, 432, 549, 576, 1290, 1530, 1544
ApeKI GCWGC 5 cut(s) 252, 1193, 1196, 2018, 2072
ApoI RAATTY 6 cut(s) 7, 415, 1101, 1153, 1642, 1669
ArsI GACNNNNNNTTYG 4 cut(s) 1078, 1110, 2382, 2414
Asp718I GGTACC 2 cut(s) 217, 1859
AspLEI GCGC 1 cut(s) 2136
AspS9I GGNCC 7 cut(s) 210, 280, 1186, 1545, 1961, 2390, 2446
AsuC2I CCSGG 3 cut(s) 822, 1959, 2203
AsuII TTCGAA 1 cut(s) 1636
AvaII GGWCC 5 cut(s) 210, 1186, 1961, 2390, 2446
BaeI ACNNNNGTAYC 2 cut(s) 1270, 1303
BanI GGYRCC 2 cut(s) 217, 1859
BauI CACGAG 1 cut(s) 2356
BbsI GAAGAC 1 cut(s) 1947
BbvI GCAGC 5 cut(s) 239, 1183, 1205, 2030, 2059
BceAI ACGGC 2 cut(s) 167, 175
BcgI CGANNNNNNTGC 4 cut(s) 376, 410, 526, 560
BciT130I CCWGG 5 cut(s) 63, 106, 1190, 1759, 2394
BciVI GTATCC 1 cut(s) 1580
BclI TGATCA 3 cut(s) 801, 1359, 1390
BcnI CCSGG 3 cut(s) 822, 1959, 2203
BcoDI GTCTC 4 cut(s) 329, 450, 455, 498
BfaI CTAG 5 cut(s) 852, 1050, 1275, 1869, 1929
BfmI CTRYAG 2 cut(s) 151, 1885
BfoI RGCGCY 1 cut(s) 2137
BfuAI ACCTGC 2 cut(s) 700, 2309
BfuI GTATCC 1 cut(s) 1580
BglII AGATCT 2 cut(s) 2264, 2524
BisI GCNGC 5 cut(s) 253, 1194, 1197, 2019, 2073
BlpI GCTNAGC 1 cut(s) 1200
BlsI GCNGC 5 cut(s) 254, 1195, 1198, 2020, 2074
Bme1390I CCNGG 8 cut(s) 63, 106, 822, 1190, 1759, 1959, 2203, 2394
Bme18I GGWCC 5 cut(s) 210, 1186, 1961, 2390, 2446
BmgT120I GGNCC 7 cut(s) 210, 280, 1186, 1545, 1961, 2390, 2446
BmiI GGNNCC 7 cut(s) 211, 219, 1187, 1861, 1962, 2105, 2151
BmrFI CCNGG 8 cut(s) 63, 106, 822, 1190, 1759, 1959, 2203, 2394
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 8 cut(s) 370, 784, 999, 1302, 1375, 1460, 1515, 1941
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 1947
BpmI CTGGAG 1 cut(s) 88
Bpu1102I GCTNAGC 1 cut(s) 1200
Bpu14I TTCGAA 1 cut(s) 1636
BpuMI CCSGG 3 cut(s) 822, 1959, 2203
BsaAI YACGTR 1 cut(s) 1347
BsaBI GATNNNNATC 2 cut(s) 1329, 1389
BsaHI GRCGYC 1 cut(s) 1233
BsaI GGTCTC 2 cut(s) 329, 450
BsaJI CCNNGG 6 cut(s) 171, 213, 597, 821, 1621, 2107
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 9 cut(s) 207, 331, 669, 1417, 1583, 1584, 1856, 2067, 2113
Bse1I ACTGG 3 cut(s) 163, 282, 1905
Bse3DI GCAATG 4 cut(s) 804, 1404, 2028, 2635
Bse8I GATNNNNATC 2 cut(s) 1329, 1389
BseBI CCWGG 5 cut(s) 63, 106, 1190, 1759, 2394
BseDI CCNNGG 6 cut(s) 171, 213, 597, 821, 1621, 2107
BseGI GGATG 7 cut(s) 724, 1330, 1795, 2218, 2289, 2428, 2588
BseJI GATNNNNATC 2 cut(s) 1329, 1389
BseLI CCNNNNNNNGG 9 cut(s) 207, 331, 669, 1417, 1583, 1584, 1856, 2067, 2113
BseMI GCAATG 4 cut(s) 804, 1404, 2028, 2635
BseMII CTCAG 6 cut(s) 466, 980, 1074, 1191, 1236, 2519
BseNI ACTGG 3 cut(s) 163, 282, 1905
BseRI GAGGAG 3 cut(s) 137, 2050, 2444
BseXI GCAGC 5 cut(s) 239, 1183, 1205, 2030, 2059
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 9 cut(s) 162, 176, 282, 434, 551, 578, 1292, 1532, 1546
BshNI GGYRCC 2 cut(s) 217, 1859
BsiSI CCGG 7 cut(s) 283, 460, 518, 821, 1958, 2202, 2210
BslFI GGGAC 5 cut(s) 637, 1140, 1199, 1643, 1927
BslI CCNNNNNNNGG 9 cut(s) 207, 331, 669, 1417, 1583, 1584, 1856, 2067, 2113
BsmAI GTCTC 4 cut(s) 329, 450, 455, 498
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 5 cut(s) 637, 1140, 1199, 1643, 1927
BsmI GAATGC 2 cut(s) 408, 2254
BsnI GGCC 9 cut(s) 162, 176, 282, 434, 551, 578, 1292, 1532, 1546
Bso31I GGTCTC 2 cut(s) 329, 450
Bsp119I TTCGAA 1 cut(s) 1636
Bsp1407I TGTACA 1 cut(s) 1327
Bsp1720I GCTNAGC 1 cut(s) 1200
Bsp19I CCATGG 2 cut(s) 597, 1621
BspACI CCGC 7 cut(s) 81, 115, 221, 621, 653, 1441, 1578
BspANI GGCC 9 cut(s) 162, 176, 282, 434, 551, 578, 1292, 1532, 1546
BspCNI CTCAG 6 cut(s) 465, 979, 1073, 1192, 1235, 2520
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 1305
BspLI GGNNCC 7 cut(s) 211, 219, 1187, 1861, 1962, 2105, 2151
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 2 cut(s) 700, 2309
BspPI GGATC 3 cut(s) 926, 1410, 1612
BspT104I TTCGAA 1 cut(s) 1636
BspT107I GGYRCC 2 cut(s) 217, 1859
BspTNI GGTCTC 2 cut(s) 329, 450
BsrBI CCGCTC 1 cut(s) 621
BsrDI GCAATG 4 cut(s) 804, 1404, 2028, 2635
BsrGI TGTACA 1 cut(s) 1327
BsrI ACTGG 3 cut(s) 163, 282, 1905
BssECI CCNNGG 6 cut(s) 171, 213, 597, 821, 1621, 2107
BssNAI GTATAC 1 cut(s) 936
BssNI GRCGYC 1 cut(s) 1233
BssSI CACGAG 1 cut(s) 2356
BssT1I CCWWGG 4 cut(s) 213, 597, 1621, 2107
Bst1107I GTATAC 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 2356
Bst2UI CCWGG 5 cut(s) 63, 106, 1190, 1759, 2394
Bst6I CTCTTC 2 cut(s) 1412, 2421
BstACI GRCGYC 1 cut(s) 1233
BstAPI GCANNNNNTGC 1 cut(s) 2123
BstAUI TGTACA 1 cut(s) 1327
BstBAI YACGTR 1 cut(s) 1347
BstBI TTCGAA 1 cut(s) 1636
BstC8I GCNNGC 6 cut(s) 385, 549, 1066, 1530, 1578, 2089
BstDEI CTNAG 7 cut(s) 452, 966, 1060, 1200, 1222, 1508, 2528
BstDSI CCRYGG 2 cut(s) 597, 1621
BstF5I GGATG 7 cut(s) 724, 1330, 1795, 2218, 2289, 2428, 2588
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 2137
BstHHI GCGC 1 cut(s) 2136
BstMAI GTCTC 4 cut(s) 329, 450, 455, 498
BstMWI GCNNNNNNNGC 8 cut(s) 159, 618, 659, 1061, 1394, 1478, 2123, 2381
BstNI CCWGG 5 cut(s) 63, 106, 1190, 1759, 2394
BstNSI RCATGY 3 cut(s) 355, 1171, 2091
BstSCI CCNGG 8 cut(s) 61, 104, 820, 1188, 1757, 1957, 2201, 2392
BstSFI CTRYAG 2 cut(s) 151, 1885
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 5 cut(s) 239, 1183, 1205, 2030, 2059
BstV2I GAAGAC 1 cut(s) 1947
BstX2I RGATCY 4 cut(s) 1402, 1617, 2264, 2524
BstXI CCANNNNNNTGG 1 cut(s) 1096
BstYI RGATCY 4 cut(s) 1402, 1617, 2264, 2524
BstZ17I GTATAC 1 cut(s) 936
BsuI GTATCC 1 cut(s) 1580
BsuRI GGCC 9 cut(s) 162, 176, 282, 434, 551, 578, 1292, 1532, 1546
BtgI CCRYGG 2 cut(s) 597, 1621
BtgZI GCGATG 2 cut(s) 163, 899
BtsCI GGATG 7 cut(s) 724, 1330, 1795, 2218, 2289, 2428, 2588
BtsI GCAGTG 1 cut(s) 878
BtsIMutI CAGTG 8 cut(s) 254, 878, 1082, 1543, 1942, 2282, 2307, 2458
BveI ACCTGC 2 cut(s) 700, 2309
Cac8I GCNNGC 6 cut(s) 385, 549, 1066, 1530, 1578, 2089
CaiI CAGNNNCTG 1 cut(s) 1199
CciI TCATGA 1 cut(s) 1305
CfoI GCGC 1 cut(s) 2136
Cfr13I GGNCC 7 cut(s) 210, 280, 1186, 1545, 1961, 2390, 2446
CsiI ACCWGGT 1 cut(s) 2392
Csp6I GTAC 9 cut(s) 218, 355, 421, 1025, 1142, 1279, 1328, 1369, 1860
CviQI GTAC 9 cut(s) 218, 355, 421, 1025, 1142, 1279, 1328, 1369, 1860
DdeI CTNAG 7 cut(s) 452, 966, 1060, 1200, 1222, 1508, 2528
EaeI YGGCCR 2 cut(s) 160, 432
Eam1104I CTCTTC 2 cut(s) 1412, 2421
EarI CTCTTC 2 cut(s) 1412, 2421
Eco130I CCWWGG 4 cut(s) 213, 597, 1621, 2107
Eco147I AGGCCT 4 cut(s) 551, 578, 1292, 1532
Eco31I GGTCTC 2 cut(s) 329, 450
Eco47I GGWCC 5 cut(s) 210, 1186, 1961, 2390, 2446
Eco47III AGCGCT 1 cut(s) 2135
Eco57I CTGAAG 3 cut(s) 230, 1519, 1674
EcoO109I RGGNCCY 2 cut(s) 1186, 2390
EcoRII CCWGG 5 cut(s) 61, 104, 1188, 1757, 2392
EcoT14I CCWWGG 4 cut(s) 213, 597, 1621, 2107
ErhI CCWWGG 4 cut(s) 213, 597, 1621, 2107
Esp3I CGTCTC 1 cut(s) 498
FaqI GGGAC 5 cut(s) 637, 1140, 1199, 1643, 1927
FauI CCCGC 4 cut(s) 88, 122, 614, 1585
FauNDI CATATG 2 cut(s) 1687, 2191
FbaI TGATCA 3 cut(s) 801, 1359, 1390
FblI GTMKAC 4 cut(s) 132, 935, 1236, 1986
Fnu4HI GCNGC 5 cut(s) 253, 1194, 1197, 2019, 2073
FokI GGATG 7 cut(s) 731, 1317, 1782, 2225, 2296, 2435, 2595
Fsp4HI GCNGC 5 cut(s) 253, 1194, 1197, 2019, 2073
FspBI CTAG 5 cut(s) 852, 1050, 1275, 1869, 1929
GlaI GCGC 1 cut(s) 2135
GluI GCNGC 5 cut(s) 253, 1194, 1197, 2019, 2073
GsuI CTGGAG 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 2137
HaeIII GGCC 9 cut(s) 162, 176, 282, 434, 551, 578, 1292, 1532, 1546
HapII CCGG 7 cut(s) 283, 460, 518, 821, 1958, 2202, 2210
HhaI GCGC 1 cut(s) 2136
Hin1I GRCGYC 1 cut(s) 1233
Hin6I GCGC 1 cut(s) 2134
HinP1I GCGC 1 cut(s) 2134
HincII GTYRAC 1 cut(s) 2293
HindII GTYRAC 1 cut(s) 2293
HinfI GANTC 9 cut(s) 982, 1128, 1319, 1649, 2057, 2095, 2167, 2436, 2603
HpaII CCGG 7 cut(s) 283, 460, 518, 821, 1958, 2202, 2210
Hpy188III TCNNGA 9 cut(s) 75, 926, 1306, 1519, 1698, 1716, 1799, 1964, 2512
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 532, 1543, 2226
HpyCH4IV ACGT 4 cut(s) 1233, 1346, 1999, 2309
HpyF10VI GCNNNNNNNGC 8 cut(s) 159, 618, 659, 1061, 1394, 1478, 2123, 2381
HpyF3I CTNAG 7 cut(s) 452, 966, 1060, 1200, 1222, 1508, 2528
HpySE526I ACGT 4 cut(s) 1233, 1346, 1999, 2309
Hsp92I GRCGYC 1 cut(s) 1233
HspAI GCGC 1 cut(s) 2134
KpnI GGTACC 2 cut(s) 221, 1863
Ksp22I TGATCA 3 cut(s) 801, 1359, 1390
LmnI GCTCC 3 cut(s) 294, 481, 2131
Lsp1109I GCAGC 5 cut(s) 239, 1183, 1205, 2030, 2059
LweI GCATC 8 cut(s) 370, 784, 999, 1302, 1375, 1460, 1515, 1941
MabI ACCWGGT 1 cut(s) 2392
MaeI CTAG 5 cut(s) 852, 1050, 1275, 1869, 1929
MaeII ACGT 4 cut(s) 1233, 1346, 1999, 2309
MaeIII GTNAC 4 cut(s) 94, 829, 1555, 2361
MbiI CCGCTC 1 cut(s) 621
MflI RGATCY 4 cut(s) 1402, 1617, 2264, 2524
MlyI GAGTC 3 cut(s) 1122, 1658, 2051
MmeI TCCRAC 1 cut(s) 710
MseI TTAA 4 cut(s) 858, 1437, 2138, 2597
MslI CAYNNNNRTG 5 cut(s) 602, 1166, 1310, 1335, 1626
MspA1I CMGCKG 1 cut(s) 1196
MspI CCGG 7 cut(s) 283, 460, 518, 821, 1958, 2202, 2210
MspR9I CCNGG 8 cut(s) 63, 106, 822, 1190, 1759, 1959, 2203, 2394
Mva1269I GAATGC 2 cut(s) 408, 2254
MvaI CCWGG 5 cut(s) 63, 106, 1190, 1759, 2394
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 8 cut(s) 159, 618, 659, 1061, 1394, 1478, 2123, 2381
NciI CCSGG 3 cut(s) 822, 1959, 2203
NcoI CCATGG 2 cut(s) 597, 1621
NdeI CATATG 2 cut(s) 1687, 2191
NlaIV GGNNCC 7 cut(s) 211, 219, 1187, 1861, 1962, 2105, 2151
NmeAIII GCCGAG 1 cut(s) 1745
NmuCI GTSAC 2 cut(s) 94, 829
NspI RCATGY 3 cut(s) 355, 1171, 2091
NspV TTCGAA 1 cut(s) 1636
PaeI GCATGC 1 cut(s) 2091
PagI TCATGA 1 cut(s) 1305
PaqCI CACCTGC 2 cut(s) 700, 2309
PceI AGGCCT 4 cut(s) 551, 578, 1292, 1532
PciI ACATGT 1 cut(s) 1167
PctI GAATGC 2 cut(s) 408, 2254
PfeI GAWTC 6 cut(s) 982, 1319, 2095, 2167, 2436, 2603
PflMI CCANNNNNTGG 1 cut(s) 1417
PfoI TCCNGGA 2 cut(s) 104, 2201
PkrI GCNGC 5 cut(s) 254, 1195, 1198, 2020, 2074
PleI GAGTC 3 cut(s) 1122, 1657, 2051
PpsI GAGTC 3 cut(s) 1122, 1657, 2051
Ppu21I YACGTR 1 cut(s) 1347
PpuMI RGGWCCY 2 cut(s) 1186, 2390
PscI ACATGT 1 cut(s) 1167
Psp5II RGGWCCY 2 cut(s) 1186, 2390
Psp6I CCWGG 5 cut(s) 61, 104, 1188, 1757, 2392
PspGI CCWGG 5 cut(s) 61, 104, 1188, 1757, 2392
PspN4I GGNNCC 7 cut(s) 211, 219, 1187, 1861, 1962, 2105, 2151
PspPI GGNCC 7 cut(s) 210, 280, 1186, 1545, 1961, 2390, 2446
PspPPI RGGWCCY 2 cut(s) 1186, 2390
PstI CTGCAG 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 1199
PsuI RGATCY 4 cut(s) 1402, 1617, 2264, 2524
PvuII CAGCTG 1 cut(s) 1196
RsaI GTAC 9 cut(s) 219, 356, 422, 1026, 1143, 1280, 1329, 1370, 1861
RsaNI GTAC 9 cut(s) 218, 355, 421, 1025, 1142, 1279, 1328, 1369, 1860
RseI CAYNNNNRTG 5 cut(s) 602, 1166, 1310, 1335, 1626
SaqAI TTAA 4 cut(s) 858, 1437, 2138, 2597
SatI GCNGC 5 cut(s) 253, 1194, 1197, 2019, 2073
Sau96I GGNCC 7 cut(s) 210, 280, 1186, 1545, 1961, 2390, 2446
SchI GAGTC 3 cut(s) 1122, 1658, 2051
ScrFI CCNGG 8 cut(s) 63, 106, 822, 1190, 1759, 1959, 2203, 2394
SexAI ACCWGGT 1 cut(s) 2392
SfaNI GCATC 8 cut(s) 370, 784, 999, 1302, 1375, 1460, 1515, 1941
SfcI CTRYAG 2 cut(s) 151, 1885
SfuI TTCGAA 1 cut(s) 1636
SinI GGWCC 5 cut(s) 210, 1186, 1961, 2390, 2446
SmiMI CAYNNNNRTG 5 cut(s) 602, 1166, 1310, 1335, 1626
SphI GCATGC 1 cut(s) 2091
SseBI AGGCCT 4 cut(s) 551, 578, 1292, 1532
SsiI CCGC 7 cut(s) 81, 115, 221, 621, 653, 1441, 1578
SspI AATATT 1 cut(s) 301
SspMI CTAG 5 cut(s) 852, 1050, 1275, 1869, 1929
StuI AGGCCT 4 cut(s) 551, 578, 1292, 1532
StyD4I CCNGG 8 cut(s) 61, 104, 820, 1188, 1757, 1957, 2201, 2392
StyI CCWWGG 4 cut(s) 213, 597, 1621, 2107
TaiI ACGT 4 cut(s) 1236, 1349, 2002, 2312
TaqI TCGA 6 cut(s) 396, 573, 581, 1636, 1742, 2330
TatI WGTACW 3 cut(s) 420, 1141, 1327
TfiI GAWTC 6 cut(s) 982, 1319, 2095, 2167, 2436, 2603
Tru1I TTAA 4 cut(s) 858, 1437, 2138, 2597
Tru9I TTAA 4 cut(s) 858, 1437, 2138, 2597
TscAI CASTG 8 cut(s) 254, 878, 1089, 1543, 1942, 2282, 2307, 2458
TseFI GTSAC 2 cut(s) 94, 829
TseI GCWGC 5 cut(s) 252, 1193, 1196, 2018, 2072
Tsp45I GTSAC 2 cut(s) 94, 829
TspGWI ACGGA 2 cut(s) 414, 522
TspRI CASTG 8 cut(s) 254, 878, 1089, 1543, 1942, 2282, 2307, 2458
Van91I CCANNNNNTGG 1 cut(s) 1417
VpaK11BI GGWCC 5 cut(s) 210, 1186, 1961, 2390, 2446
XapI RAATTY 6 cut(s) 7, 415, 1101, 1153, 1642, 1669
XceI RCATGY 3 cut(s) 355, 1171, 2091
XmiI GTMKAC 4 cut(s) 132, 935, 1236, 1986
XspI CTAG 5 cut(s) 852, 1050, 1275, 1869, 1929
ZraI GACGTC 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.