RLG00000011220

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008721
Physical Location & Seq
Forward (+)
7765666 .. 7768338
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011220

Sequence Viewer

Length: 2673 bp
ATGGAGAATTTCACTTTCCCATGCAAATCAAACCCTCTCATTCCCATAATACCCTCCAAACCAGGCAACCCATCAGACTTCTCACCCAGACCCACCAAGCCCACCATCACTTTCTCCAGGAAAACCCGCCCAAATCCACCCGTAGACAATTTGAACCTCCTCTGCAGGAACGGCCAGTTCACCGAGGCCATCGCCGTTCTCGACTCCCTTGCCCAAAGTGGGTCCAAGGTTCCGCCCACTACTTACATGAACTTACTTCAGTGCTGCATTGACACCAATTCTATTCAACTGGGGCGGAAGCTCCATCAGAATATTGATGTGGTTGATAAAGTGAACCCCTTTGTGGAGACCAAGCTGGTGAGCATGTACGCGAAATGTGGGTCCTTGGAAGATGCACGCAAGGTGTTCGACGGAATGCGTGAGAGGAATTTGTACTCTTGGTCGGCCATGATCGGTGCGTGTCTCAGAGACCGGAGGTGGAATGAGGTGGTGGAGCTTTTTGTGTTGATGGTGAGAGACGGAGTTTTGCCGGATTACTTTCTGTTTCCGAAGGTGCTGCAGGCCTGTGGGAACTGTTGTGATTTCGAGGCCTCGAAAATGATACATTCCATGGTGGTGAGGTGCAATTTGAGTGGTACTATGCACATAAACAATTCGTTATTGGCAGTTTACGCCAAGTGTGGGAAGTTGAAGTGGGCGAGGAAGTTTTTTGAGGAAATGGAGGTGAGGGATGGGGTGAGTTGGAACACAATTATATCTGGTTATTGCCAGAATGGTGAGAATGAAGAAGCTCGGAGGCTGATTGATGCAATGATCAAACAGGGGATTGAACCGGGGTTGGTCACTTGGAATATATTGATTTCTAGTTTTAATAAGTCGGGGCAGTGTGATGTTGCGATAGAACTGATGAAGAAGATGGAGAACTGTGGGATCACTCCTGATGTGTATACTTGGACTTCTATGATTTCGGGATTTGCTCAGAACAACAGGACGAATCAGGCATTGGATTTGTGGAAGAAGATGCTTTTGTCAGGTGTACAACCAAATGGCATTACGATTGCTAGTGCAATCTCAGCTTGCACATCTTTGAAATCACTGACCAAAGGTTTGGAAATTTATGCTTTTGCTGTGAAGATGGGACTTATTGATGGTGTACTCATTGGAAATTCGCTCATTGACATGTTTTCAAAGTGTGGGGACCTGGAAGCTGCTGAGCAAGTCTTCACTATGATCTCAGATAAAGACGTCTACACTTGGAACTCCATGATAGGAGGATATTGCCAAGCTAGGTACTGTGGTAAGGCCTATGAACTGTTCATGAAGATGCAGGAATCAGATGTACATCCAAATGCCATCACGTATAATGTGATGATCACAGGGTACATTCAGAATGGAGATGCTGATCAAGCAATGGATCTCTTCCAAATGATGGAACGAGATGGGAAAGTTAAGCGGAATACAGCATCGTGGAACTCTCTTATTGCTGGTTTTGCTCAACTTGGGGAAATAAATGAGGCACTTAGGATATTCAGGAAGATGCAGGCCTTCAGTGTTAGCCCCAATTCAGTTACTTTGTTGAGTATCCTGCCCGCTTGTGCGAGTTTAGTTGCCATGAAAAAGGTGAAAGAGATCCATGGTAGTGTATTTCGAAGAAATTTGGAGTCTGAAGTCCCTGTTGCAAATTCTCTGATAGACACATATGCAAAATCAGGAAACATAGAGTATTCAAGAACCATATTCGATAGACTGTCATCGAAAGATATTATTACCTGGAACTCGGCAATTTCTGGTTATGTTTTACATGGTCATCCAGATATTGCACTTGATCTTTTTGACCAGATGAAGAAGTTGGGGCTCAAACCAAATAGAGGTACCTTTGCTAGTATTCTATATGCCTACAGTCTTGCTGGACTGGTAAACGAGGGGACAGAAGCTCTTTCTAGCATCAGTGAAGACTATCAAATAATACCAGGTCCAGAACATTATTCAGCTATTGTAGACCTATATGGACGTTCGGGTAGGCTTCAAGCAGCCATGGGGTTTATTGAAGATATGCCGATAGAACCAGACTCCTCTGTTTGGGCTGCCTTACTCACAGCATGCAGGATTCATGGGAACCTTGGCTTGGCAATTCATGCAGGGGAGCGCTTAATTGACTTGGAACCAGCGAATGTTCTGATTCAACAGTTTTTATTACAAGCATATGCTTTATCCGGGAAGCCGGATGATACCTCAAAGTTGAGAAGGTTTGGAAAAGAGAATGCAACAATAAAGAGATCTCTTGGTCAGTGCTGGATGGAAGTCAACAACACAGTGCATACGTTTGTTGCAGGTGATAGGTCGAAATTATGCTCAAAGTATGTAAACTCGTGGTTACAAGACATAGCAGAAAAGGCAAAAGGACCTGGTCTTCGTTGTGGGCTTGGTATTGAGGATGAAGAGGAGGGAATCAGCATGGTCCACAGTGAAAAATTTGCACTTGCTTTTGCTCTCATTGGCTCCCCATCTCTACCCAAAAGTATCAGGATAGTAAAAGATCTGAGAATGTGTGGAGATTGCCACAGGACAGCTAAATATATATCAATGGCTTTTGGATGTGATATATATTTAAGTGATTCAAAGTCCTTACACCATTTTAGCAATGGGCGTTGTTCTTGTGGCGATTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

891

Amino Acids

98.87

Weight (kDa)

7.4

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 244 - 289 3.6e-13 PPR repeat family
PPR_3 PF13812 244 - 290 3.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 244 - 271 4.4e-07 PPR repeat
PPR PF01535 246 - 276 3.9e-08 PPR repeat
PPR_1 PF12854 275 - 307 2.9e-06 PPR repeat
PPR_2 PF13041 278 - 326 1.1e-13 PPR repeat family
PPR PF01535 281 - 311 1.1e-06 PPR repeat
PPR_3 PF13812 302 - 360 4.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 310 - 341 9e-08 PPR repeat
PPR_2 PF13041 313 - 360 1e-10 PPR repeat family
PPR PF01535 316 - 346 1e-06 PPR repeat
PPR_2 PF13041 414 - 461 7.2e-15 PPR repeat family
PPR_3 PF13812 415 - 461 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 417 - 446 5.6e-08 PPR repeat
PPR_long PF17177 433 - 543 7.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 447 - 478 4.8e-07 PPR repeat
PPR_2 PF13041 449 - 481 1.5e-07 PPR repeat family
PPR PF01535 452 - 481 4.5e-08 PPR repeat
TPR_24 PF23276 463 - 575 3.7e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 486 - 533 2.6e-09 PPR repeat family
PPR PF01535 489 - 515 2.6e-06 PPR repeat
PPR_2 PF13041 586 - 632 8.1e-11 PPR repeat family
PPR_3 PF13812 587 - 633 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 589 - 619 3.8e-07 PPR repeat
DYW_deaminase PF14432 811 - 890 2.6e-25 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2321
AatII GACGTC 1 cut(s) 1248
Acc36I ACCTGC 1 cut(s) 2321
Acc65I GGTACC 1 cut(s) 1871
AccB1I GGYRCC 1 cut(s) 1871
AccB7I CCANNNNNTGG 1 cut(s) 1429
AccI GTMKAC 4 cut(s) 144, 947, 1248, 1998
AccII CGCG 1 cut(s) 371
AciI CCGC 5 cut(s) 127, 233, 295, 1453, 1590
AclWI GGATC 3 cut(s) 938, 1422, 1624
AcoI YGGCCR 2 cut(s) 172, 444
AcsI RAATTY 7 cut(s) 7, 427, 1113, 1165, 1654, 1681, 2471
AcuI CTGAAG 3 cut(s) 242, 1531, 1686
AcyI GRCGYC 1 cut(s) 1245
AfaI GTAC 9 cut(s) 368, 434, 637, 1038, 1155, 1292, 1341, 1382, 1873
AfeI AGCGCT 1 cut(s) 2147
AfiI CCNNNNNNNGG 7 cut(s) 219, 343, 681, 1429, 1868, 2079, 2125
AflIII ACRYGT 1 cut(s) 1179
AjnI CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
AjuI GAANNNNNNNTTGG 4 cut(s) 986, 1018, 2108, 2140
Alw26I GTCTC 4 cut(s) 341, 462, 467, 510
AlwI GGATC 3 cut(s) 938, 1422, 1624
Aor51HI AGCGCT 1 cut(s) 2147
AoxI GGCC 7 cut(s) 172, 186, 444, 561, 588, 1302, 1542
ApeKI GCWGC 5 cut(s) 264, 556, 1208, 2030, 2084
ApoI RAATTY 7 cut(s) 7, 427, 1113, 1165, 1654, 1681, 2471
ArsI GACNNNNNNTTYG 6 cut(s) 365, 397, 1090, 1122, 2394, 2426
Asp718I GGTACC 1 cut(s) 1871
AspLEI GCGC 1 cut(s) 2148
AspS9I GGNCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
AsuC2I CCSGG 2 cut(s) 834, 2215
AsuII TTCGAA 1 cut(s) 1648
AvaII GGWCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
BaeI ACNNNNGTAYC 2 cut(s) 1282, 1315
BanI GGYRCC 1 cut(s) 1871
BanII GRGCYC 1 cut(s) 1857
BauI CACGAG 1 cut(s) 2368
BbsI GAAGAC 3 cut(s) 1213, 1959, 2402
BbvI GCAGC 5 cut(s) 251, 543, 1195, 2042, 2071
BceAI ACGGC 2 cut(s) 179, 187
BcgI CGANNNNNNTGC 6 cut(s) 191, 225, 388, 422, 538, 572
BciT130I CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
BciVI GTATCC 1 cut(s) 1592
BclI TGATCA 3 cut(s) 813, 1371, 1402
BcnI CCSGG 2 cut(s) 834, 2215
BcoDI GTCTC 4 cut(s) 341, 462, 467, 510
BfaI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
BfmI CTRYAG 3 cut(s) 163, 557, 1897
BfoI RGCGCY 1 cut(s) 2149
BfuAI ACCTGC 1 cut(s) 2321
BfuI GTATCC 1 cut(s) 1592
BglII AGATCT 2 cut(s) 2276, 2536
BisI GCNGC 5 cut(s) 265, 557, 1209, 2031, 2085
BlpI GCTNAGC 1 cut(s) 1212
BlsI GCNGC 5 cut(s) 266, 558, 1210, 2032, 2086
Bme1390I CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
Bme18I GGWCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
BmgT120I GGNCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
BmiI GGNNCC 8 cut(s) 223, 231, 382, 1199, 1873, 2117, 2163, 2500
BmrFI CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 8 cut(s) 382, 796, 1011, 1314, 1387, 1472, 1527, 1953
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 3 cut(s) 1213, 1959, 2402
BpmI CTGGAG 1 cut(s) 100
Bpu1102I GCTNAGC 1 cut(s) 1212
Bpu14I TTCGAA 1 cut(s) 1648
BpuMI CCSGG 2 cut(s) 834, 2215
BsaAI YACGTR 1 cut(s) 1359
BsaBI GATNNNNATC 2 cut(s) 1341, 1401
BsaHI GRCGYC 1 cut(s) 1245
BsaI GGTCTC 2 cut(s) 341, 462
BsaJI CCNNGG 8 cut(s) 183, 225, 384, 609, 833, 1633, 2034, 2119
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 7 cut(s) 219, 343, 681, 1429, 1868, 2079, 2125
Bse1I ACTGG 3 cut(s) 175, 294, 1917
Bse3DI GCAATG 3 cut(s) 816, 1416, 2647
Bse8I GATNNNNATC 2 cut(s) 1341, 1401
BseBI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
BseDI CCNNGG 8 cut(s) 183, 225, 384, 609, 833, 1633, 2034, 2119
BseGI GGATG 7 cut(s) 736, 1342, 1807, 2230, 2301, 2440, 2600
BseJI GATNNNNATC 2 cut(s) 1341, 1401
BseLI CCNNNNNNNGG 7 cut(s) 219, 343, 681, 1429, 1868, 2079, 2125
BseMI GCAATG 3 cut(s) 816, 1416, 2647
BseMII CTCAG 6 cut(s) 478, 992, 1086, 1203, 1248, 2531
BseNI ACTGG 3 cut(s) 175, 294, 1917
BseRI GAGGAG 3 cut(s) 149, 2062, 2456
BseXI GCAGC 5 cut(s) 251, 543, 1195, 2042, 2071
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 7 cut(s) 174, 188, 446, 563, 590, 1304, 1544
BshNI GGYRCC 1 cut(s) 1871
BsiSI CCGG 5 cut(s) 472, 530, 833, 2214, 2222
BslFI GGGAC 4 cut(s) 1152, 1211, 1655, 1939
BslI CCNNNNNNNGG 7 cut(s) 219, 343, 681, 1429, 1868, 2079, 2125
BsmAI GTCTC 4 cut(s) 341, 462, 467, 510
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 4 cut(s) 1152, 1211, 1655, 1939
BsmI GAATGC 2 cut(s) 420, 2266
BsnI GGCC 7 cut(s) 174, 188, 446, 563, 590, 1304, 1544
Bso31I GGTCTC 2 cut(s) 341, 462
Bsp119I TTCGAA 1 cut(s) 1648
Bsp1286I GDGCHC 1 cut(s) 1857
Bsp1407I TGTACA 2 cut(s) 1036, 1339
Bsp1720I GCTNAGC 1 cut(s) 1212
Bsp19I CCATGG 3 cut(s) 609, 1633, 2034
BspACI CCGC 5 cut(s) 127, 233, 295, 1453, 1590
BspANI GGCC 7 cut(s) 174, 188, 446, 563, 590, 1304, 1544
BspCNI CTCAG 6 cut(s) 477, 991, 1085, 1204, 1247, 2532
BspFNI CGCG 1 cut(s) 371
BspHI TCATGA 1 cut(s) 1317
BspLI GGNNCC 8 cut(s) 223, 231, 382, 1199, 1873, 2117, 2163, 2500
BspMAI CTGCAG 2 cut(s) 167, 561
BspMI ACCTGC 1 cut(s) 2321
BspPI GGATC 3 cut(s) 938, 1422, 1624
BspT104I TTCGAA 1 cut(s) 1648
BspT107I GGYRCC 1 cut(s) 1871
BspTNI GGTCTC 2 cut(s) 341, 462
BsrDI GCAATG 3 cut(s) 816, 1416, 2647
BsrGI TGTACA 2 cut(s) 1036, 1339
BsrI ACTGG 3 cut(s) 175, 294, 1917
BssECI CCNNGG 8 cut(s) 183, 225, 384, 609, 833, 1633, 2034, 2119
BssNAI GTATAC 1 cut(s) 948
BssNI GRCGYC 1 cut(s) 1245
BssSI CACGAG 1 cut(s) 2368
BssT1I CCWWGG 6 cut(s) 225, 384, 609, 1633, 2034, 2119
Bst1107I GTATAC 1 cut(s) 948
Bst2BI CACGAG 1 cut(s) 2368
Bst2UI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
Bst4CI ACNGT 9 cut(s) 575, 926, 1295, 1314, 1749, 1901, 2187, 2314, 2465
Bst6I CTCTTC 2 cut(s) 1424, 2433
BstACI GRCGYC 1 cut(s) 1245
BstAPI GCANNNNNTGC 1 cut(s) 2135
BstAUI TGTACA 2 cut(s) 1036, 1339
BstBAI YACGTR 1 cut(s) 1359
BstBI TTCGAA 1 cut(s) 1648
BstC8I GCNNGC 6 cut(s) 397, 561, 1078, 1542, 1590, 2101
BstDEI CTNAG 7 cut(s) 464, 978, 1072, 1212, 1234, 1520, 2540
BstDSI CCRYGG 3 cut(s) 609, 1633, 2034
BstF5I GGATG 7 cut(s) 736, 1342, 1807, 2230, 2301, 2440, 2600
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 2149
BstHHI GCGC 1 cut(s) 2148
BstMAI GTCTC 4 cut(s) 341, 462, 467, 510
BstMWI GCNNNNNNNGC 7 cut(s) 171, 671, 1073, 1406, 1490, 2135, 2393
BstNI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
BstNSI RCATGY 3 cut(s) 367, 1183, 2103
BstSCI CCNGG 8 cut(s) 61, 116, 832, 1200, 1769, 1969, 2213, 2404
BstSFI CTRYAG 3 cut(s) 163, 557, 1897
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 5 cut(s) 251, 543, 1195, 2042, 2071
BstV2I GAAGAC 3 cut(s) 1213, 1959, 2402
BstX2I RGATCY 4 cut(s) 1414, 1629, 2276, 2536
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 4 cut(s) 1414, 1629, 2276, 2536
BstZ17I GTATAC 1 cut(s) 948
BsuI GTATCC 1 cut(s) 1592
BsuRI GGCC 7 cut(s) 174, 188, 446, 563, 590, 1304, 1544
BtgI CCRYGG 3 cut(s) 609, 1633, 2034
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 7 cut(s) 736, 1342, 1807, 2230, 2301, 2440, 2600
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 8 cut(s) 266, 890, 1094, 1555, 1954, 2294, 2319, 2470
BveI ACCTGC 1 cut(s) 2321
Cac8I GCNNGC 6 cut(s) 397, 561, 1078, 1542, 1590, 2101
CciI TCATGA 1 cut(s) 1317
CfoI GCGC 1 cut(s) 2148
Cfr13I GGNCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
CsiI ACCWGGT 2 cut(s) 1969, 2404
Csp6I GTAC 9 cut(s) 367, 433, 636, 1037, 1154, 1291, 1340, 1381, 1872
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviQI GTAC 9 cut(s) 367, 433, 636, 1037, 1154, 1291, 1340, 1381, 1872
DdeI CTNAG 7 cut(s) 464, 978, 1072, 1212, 1234, 1520, 2540
EaeI YGGCCR 2 cut(s) 172, 444
Eam1104I CTCTTC 2 cut(s) 1424, 2433
EarI CTCTTC 2 cut(s) 1424, 2433
EciI GGCGGA 2 cut(s) 222, 310
Eco130I CCWWGG 6 cut(s) 225, 384, 609, 1633, 2034, 2119
Eco147I AGGCCT 4 cut(s) 563, 590, 1304, 1544
Eco24I GRGCYC 1 cut(s) 1857
Eco31I GGTCTC 2 cut(s) 341, 462
Eco47I GGWCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
Eco47III AGCGCT 1 cut(s) 2147
Eco57I CTGAAG 3 cut(s) 242, 1531, 1686
EcoO109I RGGNCCY 3 cut(s) 381, 1198, 2402
EcoRII CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
EcoT14I CCWWGG 6 cut(s) 225, 384, 609, 1633, 2034, 2119
EcoT38I GRGCYC 1 cut(s) 1857
ErhI CCWWGG 6 cut(s) 225, 384, 609, 1633, 2034, 2119
Esp3I CGTCTC 1 cut(s) 510
FaqI GGGAC 4 cut(s) 1152, 1211, 1655, 1939
FauI CCCGC 2 cut(s) 134, 1597
FauNDI CATATG 2 cut(s) 1699, 2203
FbaI TGATCA 3 cut(s) 813, 1371, 1402
FblI GTMKAC 4 cut(s) 144, 947, 1248, 1998
Fnu4HI GCNGC 5 cut(s) 265, 557, 1209, 2031, 2085
FokI GGATG 7 cut(s) 743, 1329, 1794, 2237, 2308, 2447, 2607
FriOI GRGCYC 1 cut(s) 1857
Fsp4HI GCNGC 5 cut(s) 265, 557, 1209, 2031, 2085
FspBI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
GlaI GCGC 1 cut(s) 2147
GluI GCNGC 5 cut(s) 265, 557, 1209, 2031, 2085
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 2149
HaeIII GGCC 7 cut(s) 174, 188, 446, 563, 590, 1304, 1544
HapII CCGG 5 cut(s) 472, 530, 833, 2214, 2222
HhaI GCGC 1 cut(s) 2148
Hin1I GRCGYC 1 cut(s) 1245
Hin6I GCGC 1 cut(s) 2146
HinP1I GCGC 1 cut(s) 2146
HincII GTYRAC 1 cut(s) 2305
HindII GTYRAC 1 cut(s) 2305
HinfI GANTC 9 cut(s) 203, 994, 1331, 1661, 2069, 2107, 2179, 2448, 2615
HpaII CCGG 5 cut(s) 472, 530, 833, 2214, 2222
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 3 cut(s) 544, 1555, 2238
HpyCH4III ACNGT 9 cut(s) 575, 926, 1295, 1314, 1749, 1901, 2187, 2314, 2465
HpyCH4IV ACGT 4 cut(s) 1245, 1358, 2011, 2321
HpyF10VI GCNNNNNNNGC 7 cut(s) 171, 671, 1073, 1406, 1490, 2135, 2393
HpyF3I CTNAG 7 cut(s) 464, 978, 1072, 1212, 1234, 1520, 2540
HpySE526I ACGT 4 cut(s) 1245, 1358, 2011, 2321
Hsp92I GRCGYC 1 cut(s) 1245
HspAI GCGC 1 cut(s) 2146
KpnI GGTACC 1 cut(s) 1875
Ksp22I TGATCA 3 cut(s) 813, 1371, 1402
LmnI GCTCC 4 cut(s) 306, 493, 2143, 2504
Lsp1109I GCAGC 5 cut(s) 251, 543, 1195, 2042, 2071
LweI GCATC 8 cut(s) 382, 796, 1011, 1314, 1387, 1472, 1527, 1953
MabI ACCWGGT 2 cut(s) 1969, 2404
MaeI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
MaeII ACGT 4 cut(s) 1245, 1358, 2011, 2321
MaeIII GTNAC 3 cut(s) 841, 1567, 2373
MflI RGATCY 4 cut(s) 1414, 1629, 2276, 2536
MhlI GDGCHC 1 cut(s) 1857
MlyI GAGTC 3 cut(s) 197, 1670, 2063
MmeI TCCRAC 1 cut(s) 722
MseI TTAA 4 cut(s) 870, 1449, 2150, 2609
MslI CAYNNNNRTG 5 cut(s) 614, 1178, 1322, 1347, 1638
MspI CCGG 5 cut(s) 472, 530, 833, 2214, 2222
MspR9I CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
Mva1269I GAATGC 2 cut(s) 420, 2266
MvaI CCWGG 6 cut(s) 63, 118, 1202, 1771, 1971, 2406
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 7 cut(s) 171, 671, 1073, 1406, 1490, 2135, 2393
NciI CCSGG 2 cut(s) 834, 2215
NcoI CCATGG 3 cut(s) 609, 1633, 2034
NdeI CATATG 2 cut(s) 1699, 2203
NlaIV GGNNCC 8 cut(s) 223, 231, 382, 1199, 1873, 2117, 2163, 2500
NmeAIII GCCGAG 1 cut(s) 1757
NmuCI GTSAC 1 cut(s) 841
NspI RCATGY 3 cut(s) 367, 1183, 2103
NspV TTCGAA 1 cut(s) 1648
PaeI GCATGC 1 cut(s) 2103
PagI TCATGA 1 cut(s) 1317
PaqCI CACCTGC 1 cut(s) 2321
PceI AGGCCT 4 cut(s) 563, 590, 1304, 1544
PciI ACATGT 1 cut(s) 1179
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 420, 2266
PfeI GAWTC 6 cut(s) 994, 1331, 2107, 2179, 2448, 2615
PflFI GACNNNGTC 1 cut(s) 2406
PflMI CCANNNNNTGG 1 cut(s) 1429
PfoI TCCNGGA 2 cut(s) 116, 2213
PkrI GCNGC 5 cut(s) 266, 558, 1210, 2032, 2086
PleI GAGTC 3 cut(s) 197, 1669, 2063
PpsI GAGTC 3 cut(s) 197, 1669, 2063
Ppu21I YACGTR 1 cut(s) 1359
PpuMI RGGWCCY 3 cut(s) 381, 1198, 2402
PscI ACATGT 1 cut(s) 1179
Psp5II RGGWCCY 3 cut(s) 381, 1198, 2402
Psp6I CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
PspGI CCWGG 6 cut(s) 61, 116, 1200, 1769, 1969, 2404
PspN4I GGNNCC 8 cut(s) 223, 231, 382, 1199, 1873, 2117, 2163, 2500
PspPI GGNCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
PspPPI RGGWCCY 3 cut(s) 381, 1198, 2402
PstI CTGCAG 2 cut(s) 167, 561
PsuI RGATCY 4 cut(s) 1414, 1629, 2276, 2536
PsyI GACNNNGTC 1 cut(s) 2406
RsaI GTAC 9 cut(s) 368, 434, 637, 1038, 1155, 1292, 1341, 1382, 1873
RsaNI GTAC 9 cut(s) 367, 433, 636, 1037, 1154, 1291, 1340, 1381, 1872
RseI CAYNNNNRTG 5 cut(s) 614, 1178, 1322, 1347, 1638
SaqAI TTAA 4 cut(s) 870, 1449, 2150, 2609
SatI GCNGC 5 cut(s) 265, 557, 1209, 2031, 2085
Sau96I GGNCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
SchI GAGTC 3 cut(s) 197, 1670, 2063
ScrFI CCNGG 8 cut(s) 63, 118, 834, 1202, 1771, 1971, 2215, 2406
SduI GDGCHC 1 cut(s) 1857
SexAI ACCWGGT 2 cut(s) 1969, 2404
SfaNI GCATC 8 cut(s) 382, 796, 1011, 1314, 1387, 1472, 1527, 1953
SfcI CTRYAG 3 cut(s) 163, 557, 1897
SfuI TTCGAA 1 cut(s) 1648
SinI GGWCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
SmiMI CAYNNNNRTG 5 cut(s) 614, 1178, 1322, 1347, 1638
SphI GCATGC 1 cut(s) 2103
SseBI AGGCCT 4 cut(s) 563, 590, 1304, 1544
SsiI CCGC 5 cut(s) 127, 233, 295, 1453, 1590
SspI AATATT 1 cut(s) 313
SspMI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
StuI AGGCCT 4 cut(s) 563, 590, 1304, 1544
StyD4I CCNGG 8 cut(s) 61, 116, 832, 1200, 1769, 1969, 2213, 2404
StyI CCWWGG 6 cut(s) 225, 384, 609, 1633, 2034, 2119
TaaI ACNGT 9 cut(s) 575, 926, 1295, 1314, 1749, 1901, 2187, 2314, 2465
TaiI ACGT 4 cut(s) 1248, 1361, 2014, 2324
TaqI TCGA 8 cut(s) 201, 408, 585, 593, 1648, 1740, 1754, 2342
TatI WGTACW 4 cut(s) 432, 1036, 1153, 1339
TfiI GAWTC 6 cut(s) 994, 1331, 2107, 2179, 2448, 2615
Tru1I TTAA 4 cut(s) 870, 1449, 2150, 2609
Tru9I TTAA 4 cut(s) 870, 1449, 2150, 2609
TscAI CASTG 8 cut(s) 266, 890, 1101, 1555, 1954, 2294, 2319, 2470
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 5 cut(s) 264, 556, 1208, 2030, 2084
Tsp45I GTSAC 1 cut(s) 841
TspGWI ACGGA 2 cut(s) 426, 534
TspRI CASTG 8 cut(s) 266, 890, 1101, 1555, 1954, 2294, 2319, 2470
Tth111I GACNNNGTC 1 cut(s) 2406
Van91I CCANNNNNTGG 1 cut(s) 1429
VpaK11BI GGWCC 6 cut(s) 222, 381, 1198, 1973, 2402, 2458
XapI RAATTY 7 cut(s) 7, 427, 1113, 1165, 1654, 1681, 2471
XceI RCATGY 3 cut(s) 367, 1183, 2103
XcmI CCANNNNNNNNNTGG 1 cut(s) 2639
XmiI GTMKAC 4 cut(s) 144, 947, 1248, 1998
XspI CTAG 5 cut(s) 864, 1062, 1287, 1881, 1941
ZraI GACGTC 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.