FvH4_5g24641

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008721
Physical Location & Seq
Forward (+)
16016462 .. 16024924
8463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24641.t1

Sequence Viewer

Length: 2838 bp
ATGGAGAACTTCACTCTCCCATGCAAATCAAACCCTCTAATTCCCATAATACCCTCCAAACCAGGACGACCCACCACCAAGCCCACTCTCACCTTCTCCAACAAACCCCGCCAAAACCCACCCCTAGTTCAAAACCTCCACCTCCTCTGCAAGACCGGCCAGCTCGCCGACGCCGTCGCCGTCCTCGACTCCATCGCCCAAACCGGCTCCAAGCTCCCCGCCGCCACTTACATGAACCTCCTCCAGTCCTGCATCGACTCCAACTCCATCCATCTCGGCCGGAAGCTCCATCGCGTCATCCACGCCGTCGATGACGTCACCCCCTTCGTGGAGACCAAGCTGGTGAGCATGTACGCCAAATGCGGGTGTTTAGAAGACGCGCGCAAGGTGTTCGACGAAATGCGCGAGAGGAATCTGTACACGTGGTCGGCTATGATCGGCGCGTGCTTGAGAGAGCGCCGGTGGGGTGAGGTGGTGGAGCTTTTCGCGCTGATGGTGAGAGATGGAGTGTTGCCGGATTGGTTTCTGGTTCCGAAAGTGCTGCAGGCGTGTGGGAACTGCGGGGATTTCGCGGCGGCGAGGATGGTGCATTCCATGGTGGTGAGAAGTGGTTTGATTGGTAATTTGCGTGTGAGTAATGCGTTGCTGGCGGTTTATGCGAAATGTGGGGAGTTGGAGTCGGCGAGGAGGTTTTTCGACAAGATGGAGGTGAGGGATGGGGTGAGTTGGAACAGCATTGTGTCTGGTTATTGCCAGAATGGTGACAATGTGGAAGCTCGGAGGCTGATTGATGAGATGATCAGACAGGGGATTGAACCGGGGTTGGTTACTTGGAATATATTGATTTCGAGTTGTAACAAGTCGGGGCAGTGTGATGTTGCCATGGAGCTGATGAAGAAGATGGAGAGTTGTGGGATCATTCCTGATGTGTATACTTGGACTGCTATGATTTCGGGGTTTGCTCAAAACAACAGGACGAATCAGGCATTGGATTTGTGGAAGAAGATGATTTTGTTAGGGGTGCTGCCGAATGGCATTACCATTGCTAGTGCAATCTTGGCTTGCACGTCGTTGAAATCACTGACCAAAGGTTTGGAAGTTTATGCTTTTGCGGTCAAGATTGGTCTCACTGATGATGTGCTTGTTGGAAATTCCCTCATTGACATGTTCTCCAAGTGCGGGGACCTGGAAGCTGCTGAGCAAGTCTTCAATGTGATGTCGGAGAAAGATGTGTATTCTTGGAACTCCATGATAGGGGGATATTGTCAAGCTAGGTACTGTGGTAAGGCCTATGAACTGTTCATGAAGATGCAGGAATCAGATGTGCGTCCTAATGCCATCACGTATAATGTCATGATCACCGGGTACATTCAGAATGGAGATGCGGATCAAGCCATGGATCTCTTCCAAATGATGGAACGAGATGGGAAAGTTAAGCGGAATACAGCATCTTGGAACTCTCTTATTGCGGGTTATGCTCAACTTGGGGAAATAAATGAAGCACTTAGGATATTCAGGAAGATGCAGACCTTCGGTGTTAGCCCGAATGCAGTTACTTTGTTGAGTATTCTGCCCGCTTGTGCTAGTTTAGCTGCCATGAAGAAGGTGAAAGAGATCCATGGTAGTGTTTTTAGAAGAAATTTGGAGTTTGAACTCCCTGTCGCAAATTCTCTAATAGACACCTATGCAAAATCAGGAAACATAGAGTATTCAAGAACCATTTTCGACAGAATGGCATCCAAAGATATTATCACCTGGAACTCAGCAATATCTGGCTATGTTTTACATGGTCATCCAGATGTTGCACTTGATCTTTTTGACCGGATGAAACAGTTGGGGCTGAAACCCAACAGAGGTACCTTTGCTGCTGTTCTATATGCCTATAGTCTTGCTAAAATGGTAAACGAGGGGATAGAAGCTCTTTCTAGCATTAGTGAAGAGTATCAAATAATACCAGGTCCAGAACATTATTCAGCTATCGTGGATCTATATGGACGTTCGGGTAGGCTTCAAGAAGCAGTGGAGTTTATTGAAGATATGCCAATAGAACCAGACTCCTCTGTTTGGGCTGCCTTACTCACAGCATGCAGGAATCATGGGAACCTTAGCTTGGCAATTCATGCAGGGGAGCGCTTAATTGACCTGGAACAAGGGAATGTTCTAATTCAACAGTTTGTGTTACAGGCATATGCTTTATCTGGGAAGCCAGATGATACCTCAAAATTGAGAAGGCTTGGAAAAGAGAATGCAACAATAAAGAGATCTCTTGGTCAGTGCTGGATGCTTGTCAACAACACTGTTCATACGTTTATTTCAGGTGATAGGTCGAAATTATGCTCAAAGTATGTAAACTCGTGGTTACAAGACATAGCAGAAAAGGCAAATGGACCTGATTTTCGTTGTGGGCTTGCTGTTGAAGAAGAAGAGGAGGGGATTAGCATGGTCCACTGTGAAAAACTTGCACTTGCTTTTGCCCTCATCGGCTCACAATCTGTACCCAAAAGTATCAGGATCGTAAAAGATCTGAGAATGTGTGGCGATTGCCACAGGACAGCTAAATATATATCGATGGCTTTTGGATGTGATATATATTTAAGTGACTCAAAGTCCTTGCACCACTTTAGTAATGGACGTTGTTCTTGTGGCGATTATTGCCCCAACCTTTCCACACACTCTCTGAAATCCTATAGCTTCTCATTGCTGTCCTTCTTTCAAGTCCTCCAGCAATGGCACCTCCAAACAACAACTCCTCTGCTTCTTAACACTAGTTCCCAGCACTTGAAGACTTCAAGGGCCGCGCGGTGTCTCAGTTCTCATTGCTCAAGAGCATTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

946

Amino Acids

105.01

Weight (kDa)

7.96

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 239 - 286 3.6e-12 PPR repeat family
PPR_1 PF12854 239 - 266 2.3e-06 PPR repeat
PPR PF01535 241 - 271 6.2e-08 PPR repeat
PPR_2 PF13041 273 - 321 5.2e-13 PPR repeat family
PPR PF01535 276 - 306 2.5e-07 PPR repeat
PPR_1 PF12854 305 - 336 5.1e-07 PPR repeat
PPR_2 PF13041 308 - 350 7.7e-09 PPR repeat family
PPR PF01535 311 - 341 2.3e-06 PPR repeat
PPR_long PF17177 391 - 539 2.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 409 - 456 1.4e-14 PPR repeat family
PPR_3 PF13812 410 - 456 2.2e-06 Pentatricopeptide repeat domain
PPR PF01535 412 - 441 1.4e-07 PPR repeat
PPR_3 PF13812 433 - 489 4.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 442 - 473 1e-06 PPR repeat
PPR_2 PF13041 444 - 476 1.5e-07 PPR repeat family
PPR PF01535 447 - 476 4.9e-08 PPR repeat
TPR_24 PF23276 458 - 527 2.8e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 481 - 528 1.7e-10 PPR repeat family
PPR PF01535 484 - 513 1e-07 PPR repeat
PPR_2 PF13041 581 - 627 1.2e-09 PPR repeat family
PPR_3 PF13812 582 - 628 5.5e-06 Pentatricopeptide repeat domain
PPR PF01535 584 - 614 4.1e-07 PPR repeat
DYW_deaminase PF14432 806 - 884 1.4e-23 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 1856
AccB1I GGYRCC 2 cut(s) 1856, 2730
AccB7I CCANNNNNTGG 1 cut(s) 1414
AccI GTMKAC 1 cut(s) 932
AccII CGCG 9 cut(s) 294, 380, 382, 405, 443, 488, 572, 2798, 2800
AclWI GGATC 6 cut(s) 923, 1395, 1407, 1609, 1992, 2519
AcoI YGGCCR 2 cut(s) 157, 277
AcsI RAATTY 3 cut(s) 1150, 1639, 1666
AcvI CACGTG 1 cut(s) 423
AcyI GRCGYC 2 cut(s) 171, 315
AfaI GTAC 6 cut(s) 353, 419, 1277, 1367, 1858, 2496
AfeI AGCGCT 1 cut(s) 2132
AfiI CCNNNNNNNGG 8 cut(s) 328, 363, 1179, 1254, 1414, 1853, 2064, 2110
AflIII ACRYGT 2 cut(s) 420, 1164
AhdI GACNNNNNGTC 1 cut(s) 2605
AhlI ACTAGT 1 cut(s) 2765
AjiI CACGTC 1 cut(s) 1068
AjnI CCWGG 5 cut(s) 61, 1185, 1754, 1954, 2142
AjuI GAANNNNNNNTTGG 4 cut(s) 971, 1003, 2093, 2125
Alw26I GTCTC 3 cut(s) 326, 1130, 2810
AlwI GGATC 6 cut(s) 923, 1395, 1407, 1609, 1992, 2519
Aor51HI AGCGCT 1 cut(s) 2132
AoxI GGCC 4 cut(s) 157, 277, 1287, 2793
ApeKI GCWGC 6 cut(s) 541, 1024, 1193, 1592, 1865, 2069
ApoI RAATTY 3 cut(s) 1150, 1639, 1666
ArsI GACNNNNNNTTYG 4 cut(s) 1075, 1107, 2379, 2411
Asp718I GGTACC 1 cut(s) 1856
AspLEI GCGC 8 cut(s) 382, 384, 405, 443, 459, 490, 2133, 2800
AspS9I GGNCC 5 cut(s) 1183, 1958, 2387, 2443, 2793
AsuC2I CCSGG 2 cut(s) 819, 1363
AvaII GGWCC 4 cut(s) 1183, 1958, 2387, 2443
BaeI ACNNNNGTAYC 4 cut(s) 1267, 1300, 1840, 1873
BanI GGYRCC 2 cut(s) 1856, 2730
BauI CACGAG 1 cut(s) 2353
BbrPI CACGTG 1 cut(s) 423
BbsI GAAGAC 3 cut(s) 381, 1198, 2789
BbvI GCAGC 6 cut(s) 528, 1011, 1180, 1579, 1852, 2056
BceAI ACGGC 3 cut(s) 158, 164, 290
BcgI CGANNNNNNTGC 6 cut(s) 373, 407, 523, 557, 568, 602
BciT130I CCWGG 5 cut(s) 63, 1187, 1756, 1956, 2144
BclI TGATCA 2 cut(s) 798, 1356
BcnI CCSGG 2 cut(s) 819, 1363
BcoDI GTCTC 3 cut(s) 326, 1130, 2810
BcuI ACTAGT 1 cut(s) 2765
BfaI CTAG 6 cut(s) 125, 1047, 1272, 1584, 1926, 2766
BfmI CTRYAG 3 cut(s) 542, 1882, 2686
BfoI RGCGCY 2 cut(s) 460, 2134
BglII AGATCT 2 cut(s) 2261, 2521
BlpI GCTNAGC 1 cut(s) 1197
Bme1390I CCNGG 7 cut(s) 63, 819, 1187, 1363, 1756, 1956, 2144
Bme18I GGWCC 4 cut(s) 1183, 1958, 2387, 2443
BmeRI GACNNNNNGTC 1 cut(s) 2605
BmgBI CACGTC 1 cut(s) 1068
BmgT120I GGNCC 5 cut(s) 1183, 1958, 2387, 2443, 2793
BmiI GGNNCC 6 cut(s) 208, 531, 1184, 1858, 2102, 2732
BmrFI CCNGG 7 cut(s) 63, 819, 1187, 1363, 1756, 1956, 2144
BmsI GCATC 7 cut(s) 261, 1299, 1372, 1457, 1512, 1745, 2271
BpiI GAAGAC 3 cut(s) 381, 1198, 2789
BpmI CTGGAG 2 cut(s) 227, 2705
Bpu10I CCTNAGC 1 cut(s) 2105
Bpu1102I GCTNAGC 1 cut(s) 1197
BpuEI CTTGAG 2 cut(s) 469, 2806
BpuMI CCSGG 2 cut(s) 819, 1363
Bsa29I ATCGAT 1 cut(s) 2567
BsaAI YACGTR 2 cut(s) 423, 1344
BsaBI GATNNNNATC 1 cut(s) 1386
BsaHI GRCGYC 2 cut(s) 171, 315
BsaI GGTCTC 2 cut(s) 326, 1130
BsaJI CCNNGG 5 cut(s) 594, 818, 882, 1395, 1618
BsaWI WCCGGW 1 cut(s) 1821
BsaXI ACNNNNNCTCC 8 cut(s) 248, 278, 662, 692, 1154, 1184, 2731, 2761
Bsc4I CCNNNNNNNGG 8 cut(s) 328, 363, 1179, 1254, 1414, 1853, 2064, 2110
Bse118I RCCGGY 3 cut(s) 155, 203, 459
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 4 cut(s) 1041, 2696, 2732, 2815
Bse8I GATNNNNATC 1 cut(s) 1386
BseBI CCWGG 5 cut(s) 63, 1187, 1756, 1956, 2144
BseCI ATCGAT 1 cut(s) 2567
BseDI CCNNGG 5 cut(s) 594, 818, 882, 1395, 1618
BseGI GGATG 9 cut(s) 267, 297, 588, 721, 1736, 1792, 1830, 2286, 2585
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 8 cut(s) 328, 363, 1179, 1254, 1414, 1853, 2064, 2110
BseMI GCAATG 4 cut(s) 1041, 2696, 2732, 2815
BseMII CTCAG 4 cut(s) 1188, 1776, 2516, 2821
BseNI ACTGG 1 cut(s) 244
BsePI GCGCGC 1 cut(s) 380
BseRI GAGGAG 6 cut(s) 134, 230, 700, 2047, 2441, 2739
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 6 cut(s) 528, 1011, 1180, 1579, 1852, 2056
BseYI CCCAGC 1 cut(s) 2772
Bsh1236I CGCG 9 cut(s) 294, 380, 382, 405, 443, 488, 572, 2798, 2800
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 159, 279, 1289, 2795
BshNI GGYRCC 2 cut(s) 1856, 2730
BshVI ATCGAT 1 cut(s) 2567
BsiEI CGRYCG 1 cut(s) 280
BsiSI CCGG 8 cut(s) 156, 204, 280, 460, 515, 818, 1362, 1822
BslFI GGGAC 1 cut(s) 1196
BslI CCNNNNNNNGG 8 cut(s) 328, 363, 1179, 1254, 1414, 1853, 2064, 2110
BsmAI GTCTC 3 cut(s) 326, 1130, 2810
BsmFI GGGAC 1 cut(s) 1196
BsmI GAATGC 4 cut(s) 589, 1552, 2251, 2828
BsnI GGCC 4 cut(s) 159, 279, 1289, 2795
Bso31I GGTCTC 2 cut(s) 326, 1130
Bsp1407I TGTACA 1 cut(s) 417
Bsp1720I GCTNAGC 1 cut(s) 1197
Bsp19I CCATGG 4 cut(s) 594, 882, 1395, 1618
BspANI GGCC 4 cut(s) 159, 279, 1289, 2795
BspCNI CTCAG 4 cut(s) 1189, 1775, 2517, 2820
BspDI ATCGAT 1 cut(s) 2567
BspFNI CGCG 9 cut(s) 294, 380, 382, 405, 443, 488, 572, 2798, 2800
BspHI TCATGA 2 cut(s) 1302, 1353
BspLI GGNNCC 6 cut(s) 208, 531, 1184, 1858, 2102, 2732
BspMAI CTGCAG 1 cut(s) 546
BspPI GGATC 6 cut(s) 923, 1395, 1407, 1609, 1992, 2519
BspT107I GGYRCC 2 cut(s) 1856, 2730
BspTNI GGTCTC 2 cut(s) 326, 1130
BsrDI GCAATG 4 cut(s) 1041, 2696, 2732, 2815
BsrFI RCCGGY 3 cut(s) 155, 203, 459
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 3 cut(s) 155, 203, 459
BssECI CCNNGG 5 cut(s) 594, 818, 882, 1395, 1618
BssHII GCGCGC 1 cut(s) 380
BssNAI GTATAC 1 cut(s) 933
BssNI GRCGYC 2 cut(s) 171, 315
BssSI CACGAG 1 cut(s) 2353
BssT1I CCWWGG 4 cut(s) 594, 882, 1395, 1618
Bst1107I GTATAC 1 cut(s) 933
Bst2BI CACGAG 1 cut(s) 2353
Bst2UI CCWGG 5 cut(s) 63, 1187, 1756, 1956, 2144
Bst4CI ACNGT 6 cut(s) 1280, 1299, 1833, 2172, 2299, 2450
Bst6I CTCTTC 3 cut(s) 1409, 1932, 2418
BstACI GRCGYC 2 cut(s) 171, 315
BstAPI GCANNNNNTGC 1 cut(s) 2120
BstAUI TGTACA 1 cut(s) 417
BstBAI YACGTR 2 cut(s) 423, 1344
BstDEI CTNAG 6 cut(s) 1197, 1505, 1762, 2105, 2525, 2807
BstDSI CCRYGG 4 cut(s) 594, 882, 1395, 1618
BstF5I GGATG 9 cut(s) 267, 297, 588, 721, 1736, 1792, 1830, 2286, 2585
BstFNI CGCG 9 cut(s) 294, 380, 382, 405, 443, 488, 572, 2798, 2800
BstH2I RGCGCY 2 cut(s) 460, 2134
BstHHI GCGC 8 cut(s) 382, 384, 405, 443, 459, 490, 2133, 2800
BstMAI GTCTC 3 cut(s) 326, 1130, 2810
BstMCI CGRYCG 1 cut(s) 280
BstNI CCWGG 5 cut(s) 63, 1187, 1756, 1956, 2144
BstNSI RCATGY 3 cut(s) 352, 1168, 2088
BstSCI CCNGG 7 cut(s) 61, 817, 1185, 1361, 1754, 1954, 2142
BstSFI CTRYAG 3 cut(s) 542, 1882, 2686
BstUI CGCG 9 cut(s) 294, 380, 382, 405, 443, 488, 572, 2798, 2800
BstV1I GCAGC 6 cut(s) 528, 1011, 1180, 1579, 1852, 2056
BstV2I GAAGAC 3 cut(s) 381, 1198, 2789
BstX2I RGATCY 5 cut(s) 1399, 1614, 1984, 2261, 2521
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 5 cut(s) 1399, 1614, 1984, 2261, 2521
BstZ17I GTATAC 1 cut(s) 933
BstZI CGGCCG 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 2567
BsuRI GGCC 4 cut(s) 159, 279, 1289, 2795
BsuTUI ATCGAT 1 cut(s) 2567
BtgI CCRYGG 4 cut(s) 594, 882, 1395, 1618
BtgZI GCGATG 2 cut(s) 178, 275
BtrI CACGTC 1 cut(s) 1068
BtsCI GGATG 9 cut(s) 267, 297, 588, 721, 1736, 1792, 1830, 2286, 2585
BtsI GCAGTG 2 cut(s) 875, 2025
BtsIMutI CAGTG 7 cut(s) 875, 1079, 1128, 2025, 2279, 2295, 2446
CciI TCATGA 2 cut(s) 1302, 1353
CfoI GCGC 8 cut(s) 382, 384, 405, 443, 459, 490, 2133, 2800
Cfr10I RCCGGY 3 cut(s) 155, 203, 459
Cfr13I GGNCC 5 cut(s) 1183, 1958, 2387, 2443, 2793
ClaI ATCGAT 1 cut(s) 2567
CseI GACGC 4 cut(s) 179, 283, 386, 1316
CsiI ACCWGGT 1 cut(s) 1954
Csp6I GTAC 6 cut(s) 352, 418, 1276, 1366, 1857, 2495
CviQI GTAC 6 cut(s) 352, 418, 1276, 1366, 1857, 2495
DdeI CTNAG 6 cut(s) 1197, 1505, 1762, 2105, 2525, 2807
DriI GACNNNNNGTC 1 cut(s) 2605
EaeI YGGCCR 2 cut(s) 157, 277
EagI CGGCCG 1 cut(s) 277
Eam1104I CTCTTC 3 cut(s) 1409, 1932, 2418
Eam1105I GACNNNNNGTC 1 cut(s) 2605
EarI CTCTTC 3 cut(s) 1409, 1932, 2418
EclXI CGGCCG 1 cut(s) 277
Eco130I CCWWGG 4 cut(s) 594, 882, 1395, 1618
Eco147I AGGCCT 1 cut(s) 1289
Eco31I GGTCTC 2 cut(s) 326, 1130
Eco47I GGWCC 4 cut(s) 1183, 1958, 2387, 2443
Eco47III AGCGCT 1 cut(s) 2132
Eco52I CGGCCG 1 cut(s) 277
Eco72I CACGTG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 1183
EcoRII CCWGG 5 cut(s) 61, 1185, 1754, 1954, 2142
EcoT14I CCWWGG 4 cut(s) 594, 882, 1395, 1618
ErhI CCWWGG 4 cut(s) 594, 882, 1395, 1618
FaqI GGGAC 1 cut(s) 1196
FauI CCCGC 7 cut(s) 116, 226, 356, 554, 1172, 1462, 1582
FauNDI CATATG 1 cut(s) 2188
FbaI TGATCA 2 cut(s) 798, 1356
FblI GTMKAC 1 cut(s) 932
FokI GGATG 9 cut(s) 254, 284, 595, 728, 1723, 1779, 1837, 2293, 2592
FspBI CTAG 6 cut(s) 125, 1047, 1272, 1584, 1926, 2766
GlaI GCGC 8 cut(s) 381, 383, 404, 442, 458, 489, 2132, 2799
GsaI CCCAGC 1 cut(s) 2776
GsuI CTGGAG 2 cut(s) 227, 2705
HaeII RGCGCY 2 cut(s) 460, 2134
HaeIII GGCC 4 cut(s) 159, 279, 1289, 2795
HapII CCGG 8 cut(s) 156, 204, 280, 460, 515, 818, 1362, 1822
HgaI GACGC 4 cut(s) 179, 283, 386, 1316
HhaI GCGC 8 cut(s) 382, 384, 405, 443, 459, 490, 2133, 2800
Hin1I GRCGYC 2 cut(s) 171, 315
Hin6I GCGC 8 cut(s) 380, 382, 403, 441, 457, 488, 2131, 2798
HinP1I GCGC 8 cut(s) 380, 382, 403, 441, 457, 488, 2131, 2798
HincII GTYRAC 1 cut(s) 2290
HindII GTYRAC 1 cut(s) 2290
HinfI GANTC 9 cut(s) 188, 257, 412, 677, 979, 1316, 2054, 2092, 2600
HpaII CCGG 8 cut(s) 156, 204, 280, 460, 515, 818, 1362, 1822
Hpy166II GTNNAC 6 cut(s) 420, 933, 1903, 2290, 2350, 2446
Hpy188I TCNGA 8 cut(s) 534, 780, 803, 1222, 1321, 1374, 2526, 2679
Hpy8I GTNNAC 6 cut(s) 420, 933, 1903, 2290, 2350, 2446
Hpy99I CGWCG 5 cut(s) 173, 179, 311, 398, 1072
HpyAV CCTTC 6 cut(s) 103, 334, 1540, 1597, 2223, 2716
HpyCH4III ACNGT 6 cut(s) 1280, 1299, 1833, 2172, 2299, 2450
HpyCH4IV ACGT 7 cut(s) 315, 422, 1067, 1343, 1996, 2306, 2632
HpyF3I CTNAG 6 cut(s) 1197, 1505, 1762, 2105, 2525, 2807
HpySE526I ACGT 7 cut(s) 315, 422, 1067, 1343, 1996, 2306, 2632
Hsp92I GRCGYC 2 cut(s) 171, 315
HspAI GCGC 8 cut(s) 380, 382, 403, 441, 457, 488, 2131, 2798
KpnI GGTACC 1 cut(s) 1860
Ksp22I TGATCA 2 cut(s) 798, 1356
LmnI GCTCC 6 cut(s) 212, 219, 291, 478, 886, 2128
Lsp1109I GCAGC 6 cut(s) 528, 1011, 1180, 1579, 1852, 2056
LweI GCATC 7 cut(s) 261, 1299, 1372, 1457, 1512, 1745, 2271
MabI ACCWGGT 1 cut(s) 1954
MaeI CTAG 6 cut(s) 125, 1047, 1272, 1584, 1926, 2766
MaeII ACGT 7 cut(s) 315, 422, 1067, 1343, 1996, 2306, 2632
MaeIII GTNAC 8 cut(s) 316, 761, 826, 854, 1552, 2178, 2358, 2597
MflI RGATCY 5 cut(s) 1399, 1614, 1984, 2261, 2521
MlyI GAGTC 5 cut(s) 182, 251, 686, 2048, 2594
MmeI TCCRAC 6 cut(s) 123, 285, 654, 707, 1126, 1200
MseI TTAA 4 cut(s) 1434, 2135, 2594, 2760
MslI CAYNNNNRTG 6 cut(s) 230, 599, 1163, 1307, 1623, 1797
MspI CCGG 8 cut(s) 156, 204, 280, 460, 515, 818, 1362, 1822
MspR9I CCNGG 7 cut(s) 63, 819, 1187, 1363, 1756, 1956, 2144
Mva1269I GAATGC 4 cut(s) 589, 1552, 2251, 2828
MvaI CCWGG 5 cut(s) 63, 1187, 1756, 1956, 2144
MvnI CGCG 9 cut(s) 294, 380, 382, 405, 443, 488, 572, 2798, 2800
NciI CCSGG 2 cut(s) 819, 1363
NcoI CCATGG 4 cut(s) 594, 882, 1395, 1618
NdeI CATATG 1 cut(s) 2188
NlaIV GGNNCC 6 cut(s) 208, 531, 1184, 1858, 2102, 2732
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 3 cut(s) 316, 761, 2597
NspI RCATGY 3 cut(s) 352, 1168, 2088
PaeI GCATGC 1 cut(s) 2088
PagI TCATGA 2 cut(s) 1302, 1353
PauI GCGCGC 1 cut(s) 380
PceI AGGCCT 1 cut(s) 1289
PciI ACATGT 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 4 cut(s) 171, 177, 183, 402
PctI GAATGC 4 cut(s) 589, 1552, 2251, 2828
PfeI GAWTC 4 cut(s) 412, 979, 1316, 2092
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 1414
PleI GAGTC 5 cut(s) 182, 251, 685, 2048, 2594
PmaCI CACGTG 1 cut(s) 423
PmlI CACGTG 1 cut(s) 423
PpsI GAGTC 5 cut(s) 182, 251, 685, 2048, 2594
Ppu21I YACGTR 2 cut(s) 423, 1344
PpuMI RGGWCCY 1 cut(s) 1183
PscI ACATGT 1 cut(s) 1164
Psp5II RGGWCCY 1 cut(s) 1183
Psp6I CCWGG 5 cut(s) 61, 1185, 1754, 1954, 2142
PspCI CACGTG 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 2772
PspGI CCWGG 5 cut(s) 61, 1185, 1754, 1954, 2142
PspN4I GGNNCC 6 cut(s) 208, 531, 1184, 1858, 2102, 2732
PspPI GGNCC 5 cut(s) 1183, 1958, 2387, 2443, 2793
PspPPI RGGWCCY 1 cut(s) 1183
PstI CTGCAG 1 cut(s) 546
PsuI RGATCY 5 cut(s) 1399, 1614, 1984, 2261, 2521
PsyI GACNNNGTC 1 cut(s) 173
PteI GCGCGC 1 cut(s) 380
RsaI GTAC 6 cut(s) 353, 419, 1277, 1367, 1858, 2496
RsaNI GTAC 6 cut(s) 352, 418, 1276, 1366, 1857, 2495
RseI CAYNNNNRTG 6 cut(s) 230, 599, 1163, 1307, 1623, 1797
SaqAI TTAA 4 cut(s) 1434, 2135, 2594, 2760
Sau96I GGNCC 5 cut(s) 1183, 1958, 2387, 2443, 2793
SchI GAGTC 5 cut(s) 182, 251, 686, 2048, 2594
ScrFI CCNGG 7 cut(s) 63, 819, 1187, 1363, 1756, 1956, 2144
SexAI ACCWGGT 1 cut(s) 1954
SfaNI GCATC 7 cut(s) 261, 1299, 1372, 1457, 1512, 1745, 2271
SfcI CTRYAG 3 cut(s) 542, 1882, 2686
SgrAI CRCCGGYG 1 cut(s) 459
SinI GGWCC 4 cut(s) 1183, 1958, 2387, 2443
SmiMI CAYNNNNRTG 6 cut(s) 230, 599, 1163, 1307, 1623, 1797
SmlI CTYRAG 2 cut(s) 448, 2821
SmoI CTYRAG 2 cut(s) 448, 2821
SpeI ACTAGT 1 cut(s) 2765
SphI GCATGC 1 cut(s) 2088
SseBI AGGCCT 1 cut(s) 1289
SspMI CTAG 6 cut(s) 125, 1047, 1272, 1584, 1926, 2766
StuI AGGCCT 1 cut(s) 1289
StyD4I CCNGG 7 cut(s) 61, 817, 1185, 1361, 1754, 1954, 2142
StyI CCWWGG 4 cut(s) 594, 882, 1395, 1618
TaaI ACNGT 6 cut(s) 1280, 1299, 1833, 2172, 2299, 2450
TaiI ACGT 7 cut(s) 318, 425, 1070, 1346, 1999, 2309, 2635
TaqI TCGA 9 cut(s) 186, 255, 309, 393, 696, 848, 1725, 2327, 2567
TatI WGTACW 1 cut(s) 417
TauI GCSGC 4 cut(s) 224, 575, 578, 2798
TfiI GAWTC 4 cut(s) 412, 979, 1316, 2092
Tru1I TTAA 4 cut(s) 1434, 2135, 2594, 2760
Tru9I TTAA 4 cut(s) 1434, 2135, 2594, 2760
TscAI CASTG 7 cut(s) 875, 1086, 1135, 2025, 2279, 2302, 2453
TseFI GTSAC 3 cut(s) 316, 761, 2597
TseI GCWGC 6 cut(s) 541, 1024, 1193, 1592, 1865, 2069
Tsp45I GTSAC 3 cut(s) 316, 761, 2597
TspRI CASTG 7 cut(s) 875, 1086, 1135, 2025, 2279, 2302, 2453
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 1414
VpaK11BI GGWCC 4 cut(s) 1183, 1958, 2387, 2443
XapI RAATTY 3 cut(s) 1150, 1639, 1666
XceI RCATGY 3 cut(s) 352, 1168, 2088
XcmI CCANNNNNNNNNTGG 1 cut(s) 2624
XmiI GTMKAC 1 cut(s) 932
XspI CTAG 6 cut(s) 125, 1047, 1272, 1584, 1926, 2766
ZraI GACGTC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.