Rmu_sc0000407.1_g000013

Jacalin-like lectin domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000407.1
Physical Location & Seq
Forward (+)
56381 .. 59944
3564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000407.1_g000013.1.cds

Sequence Viewer

Length: 1968 bp
atgtgggatgacggagtttactcaacggtaaggcaattagtgatagctcatggctctgggattgactccatccagattgagtatgatagcaaagggtgctcattttggtcagacaagcatggtggaaatggaggctggaaaacagacaaggtgaagcttgattatccagaggaatttttgacttcaattcatgggtattatggcaagataagtgaatgggggacagtatcagtccgatcgcttactttcaagagcaacaaaagatcttatggaccttttggaattgaacaaggaaactatttttcacttccagtgacaactggtaacaaaattgttgggtttcatgggaggtctggctggtatcttgatgcaataggagcttacctcaagccgattcagaatgatcaaaaccactacagcgtagttatggctcacacacagtacagttatatgactggtggcgctgacatccctgctggctactcactactccaaaactgtgatgtgtttctcgctataagacccaaggatgatcccattactacaaaccctgcagcttcagtgcccaacaagctctttaggcagttttctaattctggagagtcaagtgatgatggaatcatacacaagactccaagtatcgagagacttccttcaaaagttgaaggtgtggtaacatatggtccttggggaggaagtggtggttctgtgtttgatgatggagtttattcaggtattcgacaaatcaagttgtccaggaacatcggagttgtatatataaaggttcagtatgattccgatggtgaagctgtatggggagccaaacatggaggagctggaggatataaaagtgacaggataatctttgattatccgaacgaaatattgactcacatcacaggaacatatggtcctgcaatggggatggggcctaatgtgatcaagtcaatgagcttccacacgacgaagaagaagcatgggccatatggagaagaacaaggaacccaattcagcactaagctcagagaaggaaaaattgttggaattcatgggaggacaggtttgttcttagatgctattggagtacatgccatagaaggaaaggtcaaggtagagactaagactagtattgagacatcaccgccattggccatcacaaattctcctcataaagccatcaccgctatggtcccattagaacctgcaggtgctatagtcccaaaggagtctgctggtgctatagtcccaaaggaacctgcaggggccataactgagatagatcatcctcactggtctagcaaactattacgcacaaacaaaggaccagttgaagagattgcttgtggggtggtaaaagaaccggccccatgtggaccggggccttggggcggagatggaggaagagcatgggatgatggagtgttcaccgggattaggcagatacatttgacaagatcagcagaaggaatctgctcaatgcagattgagtatgatcgaagtggtcagttcatttggtctgttaagcatggaggcaatggaggaactgctccacatcgaataaaattggattatccacatgaagtgctgtcttgtatatccggctactatggttgcattagtaaaaatgagcgacctcagataataaagtcactgactttctataccagtagaggcaagtatggtccatttggagaagaagttggaaccttcttcacttcgaccaccaccgaaggcaaggtgattgtggtggacttcactgcttcatggtgtggaccatgccgtttcattgccccaatcttggcggagctggccaggaagaccacggaggtcacattcctgaaggtggatgtcgatgagctgaagaaagttgctgaggactgggctgtggaggcaatgcctacctttatgtttcttaaagaaggcaagattgtcggtgctaacaaaaatttgagcttgtgctcaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

655

Amino Acids

71.19

Weight (kDa)

7.61

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1196
Acc36I ACCTGC 3 cut(s) 1196, 1210, 1264
AciI CCGC 4 cut(s) 1142, 1182, 1389, 1802
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 2 cut(s) 1149, 1809
AcsI RAATTY 4 cut(s) 173, 1044, 1159, 1945
AcuI CTGAAG 3 cut(s) 543, 1859, 1880
AfaI GTAC 2 cut(s) 443, 1086
AfiI CCNNNNNNNGG 6 cut(s) 692, 920, 1388, 1434, 1798, 1843
AgsI TTSAA 6 cut(s) 186, 250, 287, 657, 665, 1331
AhlI ACTAGT 1 cut(s) 1124
AjnI CCWGG 2 cut(s) 755, 1811
AloI GAACNNNNNNTCC 2 cut(s) 895, 927
Alw21I GWGCWC 2 cut(s) 101, 1961
Alw26I GTCTC 3 cut(s) 640, 1109, 1127
AlwI GGATC 1 cut(s) 527
AoxI GGCC 7 cut(s) 929, 980, 1149, 1263, 1362, 1379, 1809
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 4 cut(s) 173, 1044, 1159, 1945
AspLEI GCGC 1 cut(s) 464
AsuC2I CCSGG 2 cut(s) 1377, 1429
AsuHPI GGTGA 6 cut(s) 163, 815, 1131, 1171, 1417, 1750
AvaII GGWCC 8 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682, 1772
BaeGI GKGCMC 1 cut(s) 567
BalI TGGCCA 2 cut(s) 1151, 1811
BbsI GAAGAC 1 cut(s) 1823
Bbv12I GWGCWC 2 cut(s) 101, 1961
BbvCI CCTCAGC 1 cut(s) 1872
BbvI GCAGC 1 cut(s) 566
BccI CCATC 9 cut(s) 77, 608, 713, 794, 919, 1160, 1184, 1388, 1409
BceAI ACGGC 1 cut(s) 1764
BcgI CGANNNNNNTGC 2 cut(s) 1912, 1946
BciT130I CCWGG 2 cut(s) 757, 1813
BclI TGATCA 2 cut(s) 403, 939
BcnI CCSGG 2 cut(s) 1377, 1429
BcoDI GTCTC 3 cut(s) 640, 1109, 1127
BcuI ACTAGT 1 cut(s) 1124
BfaI CTAG 2 cut(s) 1125, 1296
BfmI CTRYAG 6 cut(s) 415, 552, 1203, 1212, 1239, 1257
BfoI RGCGCY 1 cut(s) 465
BfuAI ACCTGC 3 cut(s) 1196, 1210, 1264
BglII AGATCT 1 cut(s) 263
BisI GCNGC 1 cut(s) 555
BlsI GCNGC 1 cut(s) 556
Bme1390I CCNGG 4 cut(s) 757, 1377, 1429, 1813
Bme18I GGWCC 8 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682, 1772
BmiI GGNNCC 9 cut(s) 820, 930, 1003, 1191, 1254, 1264, 1365, 1380, 1705
BmrFI CCNGG 4 cut(s) 757, 1377, 1429, 1813
BmrI ACTGGG 1 cut(s) 1888
BmsI GCATC 2 cut(s) 358, 1063
BmuI ACTGGG 1 cut(s) 1888
BpiI GAAGAC 1 cut(s) 1823
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpmI CTGGAG 2 cut(s) 618, 858
Bpu10I CCTNAGC 1 cut(s) 1872
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 1377, 1429
BsaJI CCNNGG 5 cut(s) 525, 686, 1376, 1382, 1821
BsaXI ACNNNNNCTCC 6 cut(s) 1045, 1075, 1147, 1177, 1683, 1713
Bsc4I CCNNNNNNNGG 6 cut(s) 692, 920, 1388, 1434, 1798, 1843
Bse118I RCCGGY 1 cut(s) 1360
Bse1I ACTGG 7 cut(s) 311, 325, 460, 1295, 1325, 1665, 1883
Bse3DI GCAATG 4 cut(s) 924, 1540, 1785, 1899
BseBI CCWGG 2 cut(s) 757, 1813
BseDI CCNNGG 5 cut(s) 525, 686, 1376, 1382, 1821
BseGI GGATG 8 cut(s) 13, 69, 468, 535, 930, 1282, 1417, 1852
BseLI CCNNNNNNNGG 6 cut(s) 692, 920, 1388, 1434, 1798, 1843
BseMI GCAATG 4 cut(s) 924, 1540, 1785, 1899
BseMII CTCAG 4 cut(s) 1036, 1263, 1649, 1863
BseNI ACTGG 7 cut(s) 311, 325, 460, 1295, 1325, 1665, 1883
BseRI GAGGAG 2 cut(s) 846, 1155
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 7 cut(s) 931, 982, 1151, 1265, 1364, 1381, 1811
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 101, 1961
BsiSI CCGG 4 cut(s) 1361, 1376, 1428, 1599
BslFI GGGAC 4 cut(s) 235, 1175, 1202, 1229
BslI CCNNNNNNNGG 6 cut(s) 692, 920, 1388, 1434, 1798, 1843
BsmAI GTCTC 3 cut(s) 640, 1109, 1127
BsmFI GGGAC 4 cut(s) 235, 1175, 1202, 1229
BsnI GGCC 7 cut(s) 931, 982, 1151, 1265, 1364, 1381, 1811
Bsp1286I GDGCHC 3 cut(s) 101, 567, 1961
Bsp143I GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
BspACI CCGC 4 cut(s) 1142, 1182, 1389, 1802
BspANI GGCC 7 cut(s) 931, 982, 1151, 1265, 1364, 1381, 1811
BspCNI CTCAG 4 cut(s) 1035, 1264, 1648, 1864
BspLI GGNNCC 9 cut(s) 820, 930, 1003, 1191, 1254, 1264, 1365, 1380, 1705
BspMAI CTGCAG 3 cut(s) 556, 1207, 1261
BspMI ACCTGC 3 cut(s) 1196, 1210, 1264
BspPI GGATC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 1396
BsrDI GCAATG 4 cut(s) 924, 1540, 1785, 1899
BsrFI RCCGGY 1 cut(s) 1360
BsrI ACTGG 7 cut(s) 311, 325, 460, 1295, 1325, 1665, 1883
BssAI RCCGGY 1 cut(s) 1360
BssECI CCNNGG 5 cut(s) 525, 686, 1376, 1382, 1821
BssMI GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
BssT1I CCWWGG 3 cut(s) 525, 686, 1382
Bst2UI CCWGG 2 cut(s) 757, 1813
Bst4CI ACNGT 5 cut(s) 28, 226, 441, 446, 500
Bst6I CTCTTC 2 cut(s) 1326, 1396
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 478, 1809
BstDEI CTNAG 7 cut(s) 1017, 1022, 1069, 1119, 1272, 1635, 1872
BstDSI CCRYGG 1 cut(s) 1821
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 8 cut(s) 13, 69, 468, 535, 930, 1282, 1417, 1852
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 8 cut(s) 239, 266, 406, 535, 942, 1282, 1457, 1495
BstMAI GTCTC 3 cut(s) 640, 1109, 1127
BstMBI GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 7 cut(s) 96, 377, 571, 580, 1181, 1808, 1889
BstNI CCWGG 2 cut(s) 757, 1813
BstNSI RCATGY 1 cut(s) 1091
BstSCI CCNGG 4 cut(s) 755, 1375, 1427, 1811
BstSFI CTRYAG 6 cut(s) 415, 552, 1203, 1212, 1239, 1257
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 566
BstV2I GAAGAC 1 cut(s) 1823
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 7 cut(s) 931, 982, 1151, 1265, 1364, 1381, 1811
BtgI CCRYGG 1 cut(s) 1821
BtsCI GGATG 8 cut(s) 13, 69, 468, 535, 930, 1282, 1417, 1852
BtsI GCAGTG 1 cut(s) 1755
BtsIMutI CAGTG 5 cut(s) 318, 567, 1288, 1649, 1755
BveI ACCTGC 3 cut(s) 1196, 1210, 1264
Cac8I GCNNGC 2 cut(s) 478, 1809
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 1360
Csp6I GTAC 2 cut(s) 442, 1085
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviQI GTAC 2 cut(s) 442, 1085
DdeI CTNAG 7 cut(s) 1017, 1022, 1069, 1119, 1272, 1635, 1872
DpnI GATC 8 cut(s) 238, 265, 405, 534, 941, 1281, 1456, 1494
DpnII GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
EaeI YGGCCR 2 cut(s) 1149, 1809
Eam1104I CTCTTC 2 cut(s) 1326, 1396
EarI CTCTTC 2 cut(s) 1326, 1396
EciI GGCGGA 2 cut(s) 1404, 1817
Eco130I CCWWGG 3 cut(s) 525, 686, 1382
Eco47I GGWCC 8 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682, 1772
Eco57I CTGAAG 3 cut(s) 543, 1859, 1880
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 2 cut(s) 929, 1379
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 2 cut(s) 755, 1811
EcoT14I CCWWGG 3 cut(s) 525, 686, 1382
ErhI CCWWGG 3 cut(s) 525, 686, 1382
FaqI GGGAC 4 cut(s) 235, 1175, 1202, 1229
FauNDI CATATG 3 cut(s) 679, 907, 985
FbaI TGATCA 2 cut(s) 403, 939
Fnu4HI GCNGC 1 cut(s) 555
FokI GGATG 8 cut(s) 20, 56, 455, 542, 937, 1269, 1424, 1859
Fsp4HI GCNGC 1 cut(s) 555
FspBI CTAG 2 cut(s) 1125, 1296
GlaI GCGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 555
GsuI CTGGAG 2 cut(s) 618, 858
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 7 cut(s) 931, 982, 1151, 1265, 1364, 1381, 1811
HapII CCGG 4 cut(s) 1361, 1376, 1428, 1599
HhaI GCGC 1 cut(s) 464
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 9 cut(s) 65, 394, 602, 618, 631, 794, 889, 1226, 1467
HpaII CCGG 4 cut(s) 1361, 1376, 1428, 1599
HphI GGTGA 6 cut(s) 163, 815, 1131, 1171, 1417, 1750
Hpy166II GTNNAC 5 cut(s) 19, 1373, 1425, 1750, 1772
Hpy188I TCNGA 8 cut(s) 112, 236, 399, 767, 799, 876, 1025, 1638
Hpy188III TCNNGA 7 cut(s) 73, 167, 250, 365, 597, 643, 1837
Hpy8I GTNNAC 5 cut(s) 19, 1373, 1425, 1750, 1772
Hpy99I CGWCG 1 cut(s) 967
HpyAV CCTTC 9 cut(s) 659, 663, 1022, 1091, 1457, 1717, 1724, 1834, 1913
HpyCH4III ACNGT 5 cut(s) 28, 226, 441, 446, 500
HpyCH4V TGCA 7 cut(s) 371, 554, 917, 1205, 1259, 1480, 1614
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 377, 571, 580, 1181, 1808, 1889
HpyF3I CTNAG 7 cut(s) 1017, 1022, 1069, 1119, 1272, 1635, 1872
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 2 cut(s) 403, 939
Kzo9I GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
LguI GCTCTTC 1 cut(s) 1396
LmnI GCTCC 5 cut(s) 377, 818, 833, 1552, 1804
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 2 cut(s) 358, 1063
MaeI CTAG 2 cut(s) 1125, 1296
MaeIII GTNAC 6 cut(s) 313, 323, 673, 851, 1647, 1828
MalI GATC 8 cut(s) 238, 265, 405, 534, 941, 1281, 1456, 1494
MboI GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
MboII GAAGA 9 cut(s) 979, 982, 1004, 1343, 1413, 1702, 1706, 1828, 1873
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 101, 567, 1961
MlsI TGGCCA 2 cut(s) 1151, 1811
MluNI TGGCCA 2 cut(s) 1151, 1811
MlyI GAGTC 5 cut(s) 59, 611, 625, 883, 1235
MmeI TCCRAC 2 cut(s) 1021, 1681
Mox20I TGGCCA 2 cut(s) 1151, 1811
MscI TGGCCA 2 cut(s) 1151, 1811
MseI TTAA 2 cut(s) 1521, 1914
MslI CAYNNNNRTG 1 cut(s) 1184
Msp20I TGGCCA 2 cut(s) 1151, 1811
MspI CCGG 4 cut(s) 1361, 1376, 1428, 1599
MspR9I CCNGG 4 cut(s) 757, 1377, 1429, 1813
MvaI CCWGG 2 cut(s) 757, 1813
MwoI GCNNNNNNNGC 7 cut(s) 96, 377, 571, 580, 1181, 1808, 1889
NciI CCSGG 2 cut(s) 1377, 1429
NdeI CATATG 3 cut(s) 679, 907, 985
NdeII GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
NlaIV GGNNCC 9 cut(s) 820, 930, 1003, 1191, 1254, 1264, 1365, 1380, 1705
NmuCI GTSAC 4 cut(s) 313, 851, 1647, 1828
NspI RCATGY 1 cut(s) 1091
PaqCI CACCTGC 1 cut(s) 1196
PciSI GCTCTTC 1 cut(s) 1396
PfeI GAWTC 4 cut(s) 394, 618, 794, 1467
PfoI TCCNGGA 1 cut(s) 755
PkrI GCNGC 1 cut(s) 556
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 5 cut(s) 59, 610, 625, 883, 1234
PpsI GAGTC 5 cut(s) 59, 610, 625, 883, 1234
Psp6I CCWGG 2 cut(s) 755, 1811
PspGI CCWGG 2 cut(s) 755, 1811
PspN4I GGNNCC 9 cut(s) 820, 930, 1003, 1191, 1254, 1264, 1365, 1380, 1705
PstI CTGCAG 3 cut(s) 556, 1207, 1261
PsuI RGATCY 1 cut(s) 263
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 2 cut(s) 443, 1086
RsaNI GTAC 2 cut(s) 442, 1085
RseI CAYNNNNRTG 1 cut(s) 1184
SapI GCTCTTC 1 cut(s) 1396
SaqAI TTAA 2 cut(s) 1521, 1914
SatI GCNGC 1 cut(s) 555
Sau3AI GATC 8 cut(s) 236, 263, 403, 532, 939, 1279, 1454, 1492
SbfI CCTGCAGG 2 cut(s) 1207, 1261
SchI GAGTC 5 cut(s) 59, 611, 625, 883, 1235
ScrFI CCNGG 4 cut(s) 757, 1377, 1429, 1813
SdaI CCTGCAGG 2 cut(s) 1207, 1261
SduI GDGCHC 3 cut(s) 101, 567, 1961
SfaNI GCATC 2 cut(s) 358, 1063
SfcI CTRYAG 6 cut(s) 415, 552, 1203, 1212, 1239, 1257
SinI GGWCC 8 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682, 1772
SmiMI CAYNNNNRTG 1 cut(s) 1184
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SpeI ACTAGT 1 cut(s) 1124
Sse8387I CCTGCAGG 2 cut(s) 1207, 1261
SsiI CCGC 4 cut(s) 1142, 1182, 1389, 1802
SspI AATATT 1 cut(s) 885
SspMI CTAG 2 cut(s) 1125, 1296
StyD4I CCNGG 4 cut(s) 755, 1375, 1427, 1811
StyI CCWWGG 3 cut(s) 525, 686, 1382
TaaI ACNGT 5 cut(s) 28, 226, 441, 446, 500
TaqI TCGA 6 cut(s) 642, 739, 1495, 1555, 1718, 1851
TatI WGTACW 2 cut(s) 441, 1084
TfiI GAWTC 4 cut(s) 394, 618, 794, 1467
Tru1I TTAA 2 cut(s) 1521, 1914
Tru9I TTAA 2 cut(s) 1521, 1914
TscAI CASTG 5 cut(s) 318, 567, 1295, 1656, 1762
TseFI GTSAC 4 cut(s) 313, 851, 1647, 1828
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 4 cut(s) 313, 851, 1647, 1828
TspDTI ATGAA 7 cut(s) 179, 332, 1037, 1498, 1593, 1752, 1774
TspGWI ACGGA 2 cut(s) 27, 1838
TspRI CASTG 5 cut(s) 318, 567, 1295, 1656, 1762
VpaK11BI GGWCC 8 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682, 1772
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 4 cut(s) 173, 1044, 1159, 1945
XceI RCATGY 1 cut(s) 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 1183
XspI CTAG 2 cut(s) 1125, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.