Rh6DG421900

Jacalin-like lectin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
60350675 .. 60353538
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG421900.1

Sequence Viewer

Length: 1854 bp
ATGTGGGATGACGGAGTTTACTCAACGGTAAGGCAATTAGTGATAGCTCATGGCTCTGGGATTGACTCCATCCAGATTGAGTATGATAGCAAAGGGTGCTCATTTTGGTCAGACAATCATGGTGGAAATGGAGGCTGGAAAACAGACAAGGTGAAGCTTGATTATCCAGAGGAATTTTTGACTTCAATTCATGGGTATTATGGCAAGATAAGTGAATGGGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTCACTGCCAGTGACAACTGGTAACAAAATTGTTGGGTTTCATGGGAGGTCTGGCTGGTATCTTGATGCAATAGGAGCCTACCTCAAGCCGATTCAGAATGATCAAAACCACTACAACGTAGTTATGGCTCACACACAGTACAGTTATATGACTGGTGGCGCTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCAAGGATGACCCCATTACTACAAACCCTGCAGCTTCAGTGCCCAACAAGCTCTTTAGGCAGTTTTCTAATTCTGGAGACTCAAGTGATGATGGAATCAAACACAAGACTCCAAGTATTGAGAGACTTCCTTCGAAAGTTGAAGGTGTGGTAACATATGGTCCTTGGGGAGGAAGTGGTGGTTCTGTGTTTGATGATGGAGTTTATTCAGGTATTCGACAAATCAAATTGTCCAGGAACATCGGAGTTGTATATATAAAGGTTCAGTATGATTCTGATGGTGAAGCTGTATGGGGAGCCAAACATGGAGGAGCTGGAGGATATAAAAGTGACAGGATAATCTTTGATTATCCGAACGAAATATTGACTCACATCACAGGAACATATGGTCCAGCAATGGGGATGGGGCCTAATGTGATCAAGTCAATGAGCTTCCACACGACAAAGAAGAAGCATGGGCCATATGGAGAAGAACAAGGAACCCAATTCAGCACTAAGCTGAGAGAAGGAAAAATTGTTGGAATTCATGGGAGGACAGGTTTGTTCTTAGATGCTATTGGAGTACATGCCATAGAAGGAAAGGTCAAGGTAGAGACTAAGACTAGTACTGAGACATCACCGCCTTTGGCCCTCACAAATTCGCCTCATAATGCCATCACCGCTATGGTCCCATTGGAACCTGCAGGTGCTATAGTCCCAAAGGAATCTGCTGGTGCTATAGTCCCAAAGGAACCTGCAGGTGCCATAACTGAGATTGATCATCCTCACTGGTCTAGCAAACTACTACGCACAAACAAAGGACCAGTTGAAGAGATTGCTTGTGGGGTGGTAAAAGAACCGGCCCCATGTGGACCGGGGCCTTGGGGCGGAGATGGAGGAAGAGCATGGGATGATGGAGTGTTCACCGGGATTAGGCAGATACATTTGACAAGATCAGCAGAAGGAATCTGCTCAATGCAGATCGAGTATGATCGAAGTGGTCAGTTCATTTGGTCTGTTAAGCATGGAGGCAATGGAGGAACTGCTCCACATCGAATAAAATTGGACTATCCACATGAAGTGCTGTCTTGTATATCCGGCTATTATGGTTGCATTAGTAAAAATGAGCGACCTCAGATAATAAAGTCACTGACTTTCTATACCAGTAGAGGCAAGTATGGTCCATTTGGAGAAGAAGTTGGAACCTTCTTCACTTCGACCACCACCGAAGGCAAGGTGGTTGGCTTCCATGGCAGGAGTAGCTTGTATTTGGATGCCATCGGAGTTCATATGCAACATTGGCTAGGAAGCACTCAGAAAACCTCCAGGATTTCTCTCTTCAAGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

617

Amino Acids

67.08

Weight (kDa)

8.4

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 2 - 128 5.1e-43 Jacalin-like lectin domain
Jacalin PF01419 227 - 363 1.4e-39 Jacalin-like lectin domain
Jacalin PF01419 460 - 597 8.8e-42 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1196, 1250
Acc36I ACCTGC 4 cut(s) 1196, 1210, 1250, 1264
AccB1I GGYRCC 1 cut(s) 1262
AciI CCGC 3 cut(s) 1142, 1182, 1389
AcsI RAATTY 4 cut(s) 173, 1044, 1159, 1847
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 3 cut(s) 443, 1086, 1129
AfiI CCNNNNNNNGG 4 cut(s) 692, 920, 1388, 1434
AgsI TTSAA 6 cut(s) 186, 250, 287, 665, 1331, 1843
AhlI ACTAGT 1 cut(s) 1124
AjnI CCWGG 2 cut(s) 755, 1826
AloI GAACNNNNNNTCC 2 cut(s) 895, 927
AluBI AGCT 9 cut(s) 47, 157, 557, 574, 809, 836, 954, 1021, 1764
AluI AGCT 9 cut(s) 47, 157, 557, 574, 809, 836, 954, 1021, 1764
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 5 cut(s) 232, 594, 640, 1109, 1127
AoxI GGCC 5 cut(s) 929, 980, 1149, 1362, 1379
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 4 cut(s) 173, 1044, 1159, 1847
AspLEI GCGC 1 cut(s) 464
AsuC2I CCSGG 2 cut(s) 1377, 1429
AsuHPI GGTGA 5 cut(s) 163, 815, 1131, 1171, 1417
AsuII TTCGAA 1 cut(s) 656
AvaII GGWCC 7 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682
BaeGI GKGCMC 1 cut(s) 567
BanI GGYRCC 1 cut(s) 1262
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 566
BccI CCATC 9 cut(s) 77, 608, 713, 794, 919, 1184, 1388, 1409, 1787
BciT130I CCWGG 2 cut(s) 757, 1828
BclI TGATCA 3 cut(s) 403, 939, 1279
BcnI CCSGG 2 cut(s) 1377, 1429
BcoDI GTCTC 5 cut(s) 232, 594, 640, 1109, 1127
BcuI ACTAGT 1 cut(s) 1124
BfaI CTAG 4 cut(s) 1125, 1296, 1805, 1852
BfmI CTRYAG 5 cut(s) 552, 1203, 1212, 1239, 1257
BfoI RGCGCY 1 cut(s) 465
BfuAI ACCTGC 4 cut(s) 1196, 1210, 1250, 1264
BglII AGATCT 1 cut(s) 263
BisI GCNGC 1 cut(s) 555
BlsI GCNGC 1 cut(s) 556
BmcAI AGTACT 1 cut(s) 1129
Bme1390I CCNGG 4 cut(s) 757, 1377, 1429, 1828
Bme18I GGWCC 7 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682
BmrFI CCNGG 4 cut(s) 757, 1377, 1429, 1828
BmsI GCATC 3 cut(s) 358, 1063, 1765
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpmI CTGGAG 3 cut(s) 618, 858, 1810
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 2 cut(s) 371, 589
BpuMI CCSGG 2 cut(s) 1377, 1429
BsaJI CCNNGG 5 cut(s) 525, 686, 1376, 1382, 1750
BsaXI ACNNNNNCTCC 4 cut(s) 1045, 1075, 1683, 1713
Bsc4I CCNNNNNNNGG 4 cut(s) 692, 920, 1388, 1434
Bse118I RCCGGY 1 cut(s) 1360
Bse1I ACTGG 6 cut(s) 311, 325, 460, 1295, 1325, 1665
Bse3DI GCAATG 2 cut(s) 924, 1540
BseBI CCWGG 2 cut(s) 757, 1828
BseDI CCNNGG 5 cut(s) 525, 686, 1376, 1382, 1750
BseGI GGATG 8 cut(s) 13, 69, 468, 535, 930, 1282, 1417, 1780
BseLI CCNNNNNNNGG 4 cut(s) 692, 920, 1388, 1434
BseMI GCAATG 2 cut(s) 924, 1540
BseMII CTCAG 6 cut(s) 243, 1013, 1122, 1263, 1649, 1829
BseNI ACTGG 6 cut(s) 311, 325, 460, 1295, 1325, 1665
BseRI GAGGAG 1 cut(s) 846
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 5 cut(s) 931, 982, 1151, 1364, 1381
BshNI GGYRCC 1 cut(s) 1262
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 4 cut(s) 1361, 1376, 1428, 1599
BslFI GGGAC 4 cut(s) 235, 1175, 1202, 1229
BslI CCNNNNNNNGG 4 cut(s) 692, 920, 1388, 1434
BsmAI GTCTC 5 cut(s) 232, 594, 640, 1109, 1127
BsmFI GGGAC 4 cut(s) 235, 1175, 1202, 1229
BsnI GGCC 5 cut(s) 931, 982, 1151, 1364, 1381
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 101, 567
Bsp143I GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
Bsp19I CCATGG 1 cut(s) 1750
BspACI CCGC 3 cut(s) 1142, 1182, 1389
BspANI GGCC 5 cut(s) 931, 982, 1151, 1364, 1381
BspCNI CTCAG 6 cut(s) 242, 1014, 1123, 1264, 1648, 1828
BspMAI CTGCAG 3 cut(s) 556, 1207, 1261
BspMI ACCTGC 4 cut(s) 1196, 1210, 1250, 1264
BspQI GCTCTTC 1 cut(s) 1396
BspT104I TTCGAA 1 cut(s) 656
BspT107I GGYRCC 1 cut(s) 1262
BsrDI GCAATG 2 cut(s) 924, 1540
BsrFI RCCGGY 1 cut(s) 1360
BsrI ACTGG 6 cut(s) 311, 325, 460, 1295, 1325, 1665
BssAI RCCGGY 1 cut(s) 1360
BssECI CCNNGG 5 cut(s) 525, 686, 1376, 1382, 1750
BssMI GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
BssT1I CCWWGG 4 cut(s) 525, 686, 1382, 1750
Bst2UI CCWGG 2 cut(s) 757, 1828
Bst4CI ACNGT 5 cut(s) 28, 226, 441, 446, 500
Bst6I CTCTTC 3 cut(s) 1326, 1396, 1844
BstAPI GCANNNNNTGC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 9 cut(s) 229, 1017, 1022, 1069, 1119, 1131, 1272, 1635, 1815
BstDSI CCRYGG 1 cut(s) 1750
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 8 cut(s) 13, 69, 468, 535, 930, 1282, 1417, 1780
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 8 cut(s) 239, 266, 406, 942, 1282, 1457, 1485, 1495
BstMAI GTCTC 5 cut(s) 232, 594, 640, 1109, 1127
BstMBI GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 8 cut(s) 96, 377, 571, 580, 1181, 1752, 1761, 1801
BstNI CCWGG 2 cut(s) 757, 1828
BstNSI RCATGY 1 cut(s) 1091
BstSCI CCNGG 4 cut(s) 755, 1375, 1427, 1826
BstSFI CTRYAG 5 cut(s) 552, 1203, 1212, 1239, 1257
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 566
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 5 cut(s) 931, 982, 1151, 1364, 1381
BtgI CCRYGG 1 cut(s) 1750
BtsCI GGATG 8 cut(s) 13, 69, 468, 535, 930, 1282, 1417, 1780
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 5 cut(s) 305, 318, 567, 1288, 1649
BveI ACCTGC 4 cut(s) 1196, 1210, 1250, 1264
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 1360
Csp6I GTAC 3 cut(s) 442, 1085, 1128
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviQI GTAC 3 cut(s) 442, 1085, 1128
DdeI CTNAG 9 cut(s) 229, 1017, 1022, 1069, 1119, 1131, 1272, 1635, 1815
DpnI GATC 8 cut(s) 238, 265, 405, 941, 1281, 1456, 1484, 1494
DpnII GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
Eam1104I CTCTTC 3 cut(s) 1326, 1396, 1844
EarI CTCTTC 3 cut(s) 1326, 1396, 1844
EciI GGCGGA 1 cut(s) 1404
Eco130I CCWWGG 4 cut(s) 525, 686, 1382, 1750
Eco47I GGWCC 7 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682
Eco57I CTGAAG 1 cut(s) 543
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 2 cut(s) 929, 1379
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 2 cut(s) 755, 1826
EcoT14I CCWWGG 4 cut(s) 525, 686, 1382, 1750
ErhI CCWWGG 4 cut(s) 525, 686, 1382, 1750
FaqI GGGAC 4 cut(s) 235, 1175, 1202, 1229
FauNDI CATATG 4 cut(s) 679, 907, 985, 1791
FbaI TGATCA 3 cut(s) 403, 939, 1279
Fnu4HI GCNGC 1 cut(s) 555
FokI GGATG 8 cut(s) 20, 56, 455, 542, 937, 1269, 1424, 1787
Fsp4HI GCNGC 1 cut(s) 555
FspBI CTAG 4 cut(s) 1125, 1296, 1805, 1852
GlaI GCGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 555
GsuI CTGGAG 3 cut(s) 618, 858, 1810
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 5 cut(s) 931, 982, 1151, 1364, 1381
HapII CCGG 4 cut(s) 1361, 1376, 1428, 1599
HhaI GCGC 1 cut(s) 464
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 9 cut(s) 65, 394, 602, 618, 631, 794, 889, 1226, 1467
HpaII CCGG 4 cut(s) 1361, 1376, 1428, 1599
HphI GGTGA 5 cut(s) 163, 815, 1131, 1171, 1417
Hpy166II GTNNAC 3 cut(s) 19, 1373, 1425
Hpy188I TCNGA 9 cut(s) 112, 236, 399, 767, 799, 876, 1638, 1784, 1818
Hpy188III TCNNGA 6 cut(s) 73, 167, 250, 365, 597, 1843
Hpy8I GTNNAC 3 cut(s) 19, 1373, 1425
HpyAV CCTTC 7 cut(s) 659, 663, 1022, 1091, 1457, 1717, 1724
HpyCH4III ACNGT 5 cut(s) 28, 226, 441, 446, 500
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 7 cut(s) 371, 554, 1205, 1259, 1480, 1614, 1795
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 377, 571, 580, 1181, 1752, 1761, 1801
HpyF3I CTNAG 9 cut(s) 229, 1017, 1022, 1069, 1119, 1131, 1272, 1635, 1815
HpySE526I ACGT 1 cut(s) 420
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 3 cut(s) 403, 939, 1279
Kzo9I GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
LguI GCTCTTC 1 cut(s) 1396
LmnI GCTCC 4 cut(s) 377, 818, 833, 1552
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 3 cut(s) 358, 1063, 1765
MaeI CTAG 4 cut(s) 1125, 1296, 1805, 1852
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 5 cut(s) 313, 323, 673, 851, 1647
MalI GATC 8 cut(s) 238, 265, 405, 941, 1281, 1456, 1484, 1494
MboI GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
MboII GAAGA 7 cut(s) 982, 1004, 1343, 1413, 1702, 1706, 1831
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 101, 567
MlyI GAGTC 4 cut(s) 59, 596, 625, 883
MmeI TCCRAC 2 cut(s) 1021, 1681
MseI TTAA 1 cut(s) 1521
MslI CAYNNNNRTG 1 cut(s) 1184
MspI CCGG 4 cut(s) 1361, 1376, 1428, 1599
MspR9I CCNGG 4 cut(s) 757, 1377, 1429, 1828
MvaI CCWGG 2 cut(s) 757, 1828
MwoI GCNNNNNNNGC 8 cut(s) 96, 377, 571, 580, 1181, 1752, 1761, 1801
NciI CCSGG 2 cut(s) 1377, 1429
NcoI CCATGG 1 cut(s) 1750
NdeI CATATG 4 cut(s) 679, 907, 985, 1791
NdeII GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
NmuCI GTSAC 3 cut(s) 313, 851, 1647
NspI RCATGY 1 cut(s) 1091
NspV TTCGAA 1 cut(s) 656
PaqCI CACCTGC 2 cut(s) 1196, 1250
PciSI GCTCTTC 1 cut(s) 1396
PfeI GAWTC 5 cut(s) 394, 618, 794, 1226, 1467
PfoI TCCNGGA 2 cut(s) 755, 1826
PkrI GCNGC 1 cut(s) 556
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 4 cut(s) 59, 596, 625, 883
PpsI GAGTC 4 cut(s) 59, 596, 625, 883
Psp6I CCWGG 2 cut(s) 755, 1826
PspGI CCWGG 2 cut(s) 755, 1826
PstI CTGCAG 3 cut(s) 556, 1207, 1261
PsuI RGATCY 1 cut(s) 263
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 3 cut(s) 443, 1086, 1129
RsaNI GTAC 3 cut(s) 442, 1085, 1128
RseI CAYNNNNRTG 1 cut(s) 1184
SapI GCTCTTC 1 cut(s) 1396
SaqAI TTAA 1 cut(s) 1521
SatI GCNGC 1 cut(s) 555
Sau3AI GATC 8 cut(s) 236, 263, 403, 939, 1279, 1454, 1482, 1492
SbfI CCTGCAGG 2 cut(s) 1207, 1261
ScaI AGTACT 1 cut(s) 1129
SchI GAGTC 4 cut(s) 59, 596, 625, 883
ScrFI CCNGG 4 cut(s) 757, 1377, 1429, 1828
SdaI CCTGCAGG 2 cut(s) 1207, 1261
SduI GDGCHC 2 cut(s) 101, 567
SfaNI GCATC 3 cut(s) 358, 1063, 1765
SfcI CTRYAG 5 cut(s) 552, 1203, 1212, 1239, 1257
SfuI TTCGAA 1 cut(s) 656
SinI GGWCC 7 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682
SmiMI CAYNNNNRTG 1 cut(s) 1184
SmlI CTYRAG 2 cut(s) 386, 604
SmoI CTYRAG 2 cut(s) 386, 604
SpeI ACTAGT 1 cut(s) 1124
Sse8387I CCTGCAGG 2 cut(s) 1207, 1261
SsiI CCGC 3 cut(s) 1142, 1182, 1389
SspI AATATT 1 cut(s) 885
SspMI CTAG 4 cut(s) 1125, 1296, 1805, 1852
StyD4I CCNGG 4 cut(s) 755, 1375, 1427, 1826
StyI CCWWGG 4 cut(s) 525, 686, 1382, 1750
TaaI ACNGT 5 cut(s) 28, 226, 441, 446, 500
TaiI ACGT 1 cut(s) 423
TaqI TCGA 6 cut(s) 656, 739, 1485, 1495, 1555, 1718
TatI WGTACW 3 cut(s) 441, 1084, 1127
TfiI GAWTC 5 cut(s) 394, 618, 794, 1226, 1467
Tru1I TTAA 1 cut(s) 1521
Tru9I TTAA 1 cut(s) 1521
TscAI CASTG 5 cut(s) 312, 318, 567, 1295, 1656
TseFI GTSAC 3 cut(s) 313, 851, 1647
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 3 cut(s) 313, 851, 1647
TspDTI ATGAA 6 cut(s) 179, 332, 1037, 1498, 1593, 1778
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 5 cut(s) 312, 318, 567, 1295, 1656
VpaK11BI GGWCC 7 cut(s) 272, 683, 911, 1189, 1322, 1373, 1682
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 4 cut(s) 173, 1044, 1159, 1847
XceI RCATGY 1 cut(s) 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 1183
XspI CTAG 4 cut(s) 1125, 1296, 1805, 1852
ZrmI AGTACT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.