Rh6BG428500

Jacalin-like lectin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
64918156 .. 64922208
4053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG428500.1

Sequence Viewer

Length: 1674 bp
ATGAGTACTTTTGAGGAACCGGAGAAGAAAGTGGTATCAGTTGGACCATGGGGAGGCCAAACTGGGCTCATGTGGGATGACGGAGTTTACTCAACGGTAAGGCAATTAGTGATAGCTCATGGCTCTGGGATTGACTCCATCCAGATTGAGTATGATAGCAAAGGGTGCTCATTTTGGTCAGACAAGCATGGTGGAAATGGAGGCTGGAAAACAGACAAGGTGAAGATTGATTATCCAGAGGAATTTTTGACTTCAATTCATGGGTATTATGGCAAGATAAGTGAATGGGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTCACTTCCAGTGACAACTGGTAACAAAATTGTTGGGTTTCATGGGAGGTCTGGCTGGTATCTTGATGCAATAGGAGCCTACCTCAAGCCGATTCAGAATGATCAAAACCACTACAACGTAGTTATGGCTCACACACAGTACAGTTATATGACTGGTGGCGCTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCAAGGATGACCCCATTACTACAAACCCTGCAGCTTCAGTGCCCAACAAGCTCTTTAGGCAGTTTTCTAATTCTGGAGACTCAAGTGATGATGGAATCAAACACAAGACTCCAAGTATTGAGAGACTTCCTTCAAAAGTTGAAGGTGTGGTAACATATGGTCCTTGGGGAGGAAGTGGTGGTTCTGTGTTTGATGATGGAGTTTATTCAGGTATTCGACAAATCAAATTGTCCAGGAACATCGGAGTTGTATATATAAAGGTTCAGTATGATTCTGATGGTGAAGCTGTATGGGGAGCCAAACATGGAGGAGCTGGAGGATATAAAAGTGACAGGATAATCTTTGATTATCCGAACGAAATATTGACTCACATCACAGGAACATATGGTCCAGCAATGGGGATGGGGCCTAATGTGATCAAGTCAATGAGCTTCCACACGACAAAGAAGAAGCATGGGCCATATGGAGAAGAACAAGGAACCCAATTCAGCACTAAGCTCAGAGAAGGAAAAATTGTTGGAATTCATGGGAGGACAGGTTTGTTCTTAGATGCTATTGGAGTACATGCCATAGAAGGAAAGGTCAAGGTAGAGACTAAGACTAGTACTGAGACATCACCGCCTTTGGCCCTCACAAATTCGCCTCATAATGCCATCACCGCTATGGTCCCATTGGAACCTGCAGGTGCTATAGTCCCAAAGGAATCTGCTGGTGCTATAGTCCCAAAGGAACCTGCAGGTGCCATAACTGAGATTGATCATCCTCACTGGTCTAGCAAACTACTACGCACAAACAAAGGACCAGTTGAAGAGATTGCTTGTGGGGTGGTAAAAGAACCGGCCCCATGTGGACCGGGGCCTTGGGGCGGAGATGGAGGAAGAGCATGGGATGATGGAGTGTTCACCGGGATTAGGCAGATACATTTGACAAGATCAGCAGAAGGAATCTGCTCAATGCAGATCGAGTATGATCGAAGTGGTCAGTTCATTTGGTCTGTTAAGCATGGAGGCAATGGAGGAACTGCTCCACATCGAGTACGTAATCCGTATTCCTCAATCCACCTAATCTTCATTGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

557

Amino Acids

60.26

Weight (kDa)

7.33

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 151 3.6e-47 Jacalin-like lectin domain
Jacalin PF01419 250 - 386 1.2e-39 Jacalin-like lectin domain
Jacalin PF01419 483 - 538 5.7e-13 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1265, 1319
Acc36I ACCTGC 4 cut(s) 1265, 1279, 1319, 1333
AccB1I GGYRCC 1 cut(s) 1331
AciI CCGC 3 cut(s) 1211, 1251, 1458
AcsI RAATTY 3 cut(s) 242, 1113, 1228
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 5 cut(s) 7, 512, 1155, 1198, 1629
AfiI CCNNNNNNNGG 5 cut(s) 53, 761, 989, 1457, 1503
AgsI TTSAA 7 cut(s) 255, 319, 356, 726, 734, 1400, 1670
AhlI ACTAGT 1 cut(s) 1193
AjnI CCWGG 1 cut(s) 824
AloI GAACNNNNNNTCC 2 cut(s) 964, 996
AluBI AGCT 7 cut(s) 116, 626, 643, 878, 905, 1023, 1090
AluI AGCT 7 cut(s) 116, 626, 643, 878, 905, 1023, 1090
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 5 cut(s) 301, 663, 709, 1178, 1196
AoxI GGCC 6 cut(s) 55, 998, 1049, 1218, 1431, 1448
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 3 cut(s) 242, 1113, 1228
AspLEI GCGC 1 cut(s) 533
AsuC2I CCSGG 2 cut(s) 1446, 1498
AsuHPI GGTGA 5 cut(s) 232, 884, 1200, 1240, 1486
AvaII GGWCC 7 cut(s) 44, 341, 752, 980, 1258, 1391, 1442
BaeGI GKGCMC 1 cut(s) 636
BanI GGYRCC 1 cut(s) 1331
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 635
BccI CCATC 8 cut(s) 146, 677, 782, 863, 988, 1253, 1457, 1478
BciT130I CCWGG 1 cut(s) 826
BclI TGATCA 3 cut(s) 472, 1008, 1348
BcnI CCSGG 2 cut(s) 1446, 1498
BcoDI GTCTC 5 cut(s) 301, 663, 709, 1178, 1196
BcuI ACTAGT 1 cut(s) 1193
BfaI CTAG 2 cut(s) 1194, 1365
BfmI CTRYAG 5 cut(s) 621, 1272, 1281, 1308, 1326
BfoI RGCGCY 1 cut(s) 534
BfuAI ACCTGC 4 cut(s) 1265, 1279, 1319, 1333
BglII AGATCT 1 cut(s) 332
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
BmcAI AGTACT 2 cut(s) 7, 1198
Bme1390I CCNGG 3 cut(s) 826, 1446, 1498
Bme18I GGWCC 7 cut(s) 44, 341, 752, 980, 1258, 1391, 1442
BmrFI CCNGG 3 cut(s) 826, 1446, 1498
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 427, 1132
BmuI ACTGGG 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 438, 470
BpmI CTGGAG 2 cut(s) 687, 927
BpuEI CTTGAG 2 cut(s) 440, 658
BpuMI CCSGG 2 cut(s) 1446, 1498
BsaAI YACGTR 1 cut(s) 1631
BsaJI CCNNGG 5 cut(s) 47, 594, 755, 1445, 1451
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 1114, 1144
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 761, 989, 1457, 1503
Bse118I RCCGGY 1 cut(s) 1429
Bse1I ACTGG 6 cut(s) 67, 380, 394, 529, 1364, 1394
Bse3DI GCAATG 2 cut(s) 993, 1609
BseBI CCWGG 1 cut(s) 826
BseDI CCNNGG 5 cut(s) 47, 594, 755, 1445, 1451
BseGI GGATG 7 cut(s) 82, 138, 537, 604, 999, 1351, 1486
BseLI CCNNNNNNNGG 5 cut(s) 53, 761, 989, 1457, 1503
BseMI GCAATG 2 cut(s) 993, 1609
BseMII CTCAG 4 cut(s) 312, 1105, 1191, 1332
BseNI ACTGG 6 cut(s) 67, 380, 394, 529, 1364, 1394
BseRI GAGGAG 1 cut(s) 915
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 1 cut(s) 635
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 57, 1000, 1051, 1220, 1433, 1450
BshNI GGYRCC 1 cut(s) 1331
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 4 cut(s) 20, 1430, 1445, 1497
BslFI GGGAC 4 cut(s) 304, 1244, 1271, 1298
BslI CCNNNNNNNGG 5 cut(s) 53, 761, 989, 1457, 1503
BsmAI GTCTC 5 cut(s) 301, 663, 709, 1178, 1196
BsmFI GGGAC 4 cut(s) 304, 1244, 1271, 1298
BsnI GGCC 6 cut(s) 57, 1000, 1051, 1220, 1433, 1450
Bsp1286I GDGCHC 3 cut(s) 69, 170, 636
Bsp143I GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 1211, 1251, 1458
BspANI GGCC 6 cut(s) 57, 1000, 1051, 1220, 1433, 1450
BspCNI CTCAG 4 cut(s) 311, 1104, 1192, 1333
BspMAI CTGCAG 3 cut(s) 625, 1276, 1330
BspMI ACCTGC 4 cut(s) 1265, 1279, 1319, 1333
BspQI GCTCTTC 1 cut(s) 1465
BspT107I GGYRCC 1 cut(s) 1331
BsrDI GCAATG 2 cut(s) 993, 1609
BsrFI RCCGGY 1 cut(s) 1429
BsrI ACTGG 6 cut(s) 67, 380, 394, 529, 1364, 1394
BssAI RCCGGY 1 cut(s) 1429
BssECI CCNNGG 5 cut(s) 47, 594, 755, 1445, 1451
BssMI GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
BssT1I CCWWGG 4 cut(s) 47, 594, 755, 1451
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 5 cut(s) 97, 295, 510, 515, 569
Bst6I CTCTTC 2 cut(s) 1395, 1465
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 1631
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 7 cut(s) 298, 1086, 1091, 1138, 1188, 1200, 1341
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 7 cut(s) 82, 138, 537, 604, 999, 1351, 1486
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 8 cut(s) 308, 335, 475, 1011, 1351, 1526, 1554, 1564
BstMAI GTCTC 5 cut(s) 301, 663, 709, 1178, 1196
BstMBI GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 5 cut(s) 165, 446, 640, 649, 1250
BstNI CCWGG 1 cut(s) 826
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 3 cut(s) 824, 1444, 1496
BstSFI CTRYAG 5 cut(s) 621, 1272, 1281, 1308, 1326
BstSLI GKGCMC 1 cut(s) 636
BstSNI TACGTA 1 cut(s) 1631
BstV1I GCAGC 1 cut(s) 635
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 6 cut(s) 57, 1000, 1051, 1220, 1433, 1450
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 7 cut(s) 82, 138, 537, 604, 999, 1351, 1486
BtsIMutI CAGTG 3 cut(s) 387, 636, 1357
BveI ACCTGC 4 cut(s) 1265, 1279, 1319, 1333
Cac8I GCNNGC 1 cut(s) 547
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 1429
Csp6I GTAC 5 cut(s) 6, 511, 1154, 1197, 1628
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviQI GTAC 5 cut(s) 6, 511, 1154, 1197, 1628
DdeI CTNAG 7 cut(s) 298, 1086, 1091, 1138, 1188, 1200, 1341
DpnI GATC 8 cut(s) 307, 334, 474, 1010, 1350, 1525, 1553, 1563
DpnII GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
Eam1104I CTCTTC 2 cut(s) 1395, 1465
EarI CTCTTC 2 cut(s) 1395, 1465
EciI GGCGGA 1 cut(s) 1473
Eco105I TACGTA 1 cut(s) 1631
Eco130I CCWWGG 4 cut(s) 47, 594, 755, 1451
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 7 cut(s) 44, 341, 752, 980, 1258, 1391, 1442
Eco57I CTGAAG 1 cut(s) 612
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 2 cut(s) 998, 1448
EcoRI GAATTC 1 cut(s) 1113
EcoRII CCWGG 1 cut(s) 824
EcoT14I CCWWGG 4 cut(s) 47, 594, 755, 1451
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 4 cut(s) 47, 594, 755, 1451
FaqI GGGAC 4 cut(s) 304, 1244, 1271, 1298
FauNDI CATATG 3 cut(s) 748, 976, 1054
FbaI TGATCA 3 cut(s) 472, 1008, 1348
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 7 cut(s) 89, 125, 524, 611, 1006, 1338, 1493
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 2 cut(s) 1194, 1365
GlaI GCGC 1 cut(s) 532
GluI GCNGC 1 cut(s) 624
GsuI CTGGAG 2 cut(s) 687, 927
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 6 cut(s) 57, 1000, 1051, 1220, 1433, 1450
HapII CCGG 4 cut(s) 20, 1430, 1445, 1497
HhaI GCGC 1 cut(s) 533
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 9 cut(s) 134, 463, 671, 687, 700, 863, 958, 1295, 1536
HpaII CCGG 4 cut(s) 20, 1430, 1445, 1497
HphI GGTGA 5 cut(s) 232, 884, 1200, 1240, 1486
Hpy166II GTNNAC 3 cut(s) 88, 1442, 1494
Hpy188I TCNGA 7 cut(s) 181, 305, 468, 836, 868, 945, 1094
Hpy188III TCNNGA 5 cut(s) 142, 236, 319, 434, 666
Hpy8I GTNNAC 3 cut(s) 88, 1442, 1494
HpyAV CCTTC 5 cut(s) 728, 732, 1091, 1160, 1526
HpyCH4III ACNGT 5 cut(s) 97, 295, 510, 515, 569
HpyCH4IV ACGT 2 cut(s) 489, 1630
HpyCH4V TGCA 5 cut(s) 440, 623, 1274, 1328, 1549
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 446, 640, 649, 1250
HpyF3I CTNAG 7 cut(s) 298, 1086, 1091, 1138, 1188, 1200, 1341
HpySE526I ACGT 2 cut(s) 489, 1630
HspAI GCGC 1 cut(s) 531
Ksp22I TGATCA 3 cut(s) 472, 1008, 1348
Kzo9I GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
LguI GCTCTTC 1 cut(s) 1465
LmnI GCTCC 4 cut(s) 446, 887, 902, 1621
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 2 cut(s) 427, 1132
MaeI CTAG 2 cut(s) 1194, 1365
MaeII ACGT 2 cut(s) 489, 1630
MaeIII GTNAC 4 cut(s) 382, 392, 742, 920
MalI GATC 8 cut(s) 307, 334, 474, 1010, 1350, 1525, 1553, 1563
MboI GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
MboII GAAGA 7 cut(s) 37, 235, 1051, 1073, 1412, 1482, 1651
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 3 cut(s) 69, 170, 636
MlyI GAGTC 4 cut(s) 128, 665, 694, 952
MmeI TCCRAC 2 cut(s) 22, 1090
MseI TTAA 1 cut(s) 1590
MslI CAYNNNNRTG 1 cut(s) 1253
MspI CCGG 4 cut(s) 20, 1430, 1445, 1497
MspR9I CCNGG 3 cut(s) 826, 1446, 1498
MvaI CCWGG 1 cut(s) 826
MwoI GCNNNNNNNGC 5 cut(s) 165, 446, 640, 649, 1250
NciI CCSGG 2 cut(s) 1446, 1498
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 3 cut(s) 748, 976, 1054
NdeII GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
NmuCI GTSAC 2 cut(s) 382, 920
NspI RCATGY 1 cut(s) 1160
PaqCI CACCTGC 2 cut(s) 1265, 1319
PciSI GCTCTTC 1 cut(s) 1465
PfeI GAWTC 5 cut(s) 463, 687, 863, 1295, 1536
PfoI TCCNGGA 1 cut(s) 824
PkrI GCNGC 1 cut(s) 625
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 4 cut(s) 128, 665, 694, 952
PpsI GAGTC 4 cut(s) 128, 665, 694, 952
Ppu21I YACGTR 1 cut(s) 1631
Psp6I CCWGG 1 cut(s) 824
PspGI CCWGG 1 cut(s) 824
PstI CTGCAG 3 cut(s) 625, 1276, 1330
PsuI RGATCY 1 cut(s) 332
PvuI CGATCG 1 cut(s) 308
RsaI GTAC 5 cut(s) 7, 512, 1155, 1198, 1629
RsaNI GTAC 5 cut(s) 6, 511, 1154, 1197, 1628
RseI CAYNNNNRTG 1 cut(s) 1253
SapI GCTCTTC 1 cut(s) 1465
SaqAI TTAA 1 cut(s) 1590
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 8 cut(s) 305, 332, 472, 1008, 1348, 1523, 1551, 1561
SbfI CCTGCAGG 2 cut(s) 1276, 1330
ScaI AGTACT 2 cut(s) 7, 1198
SchI GAGTC 4 cut(s) 128, 665, 694, 952
ScrFI CCNGG 3 cut(s) 826, 1446, 1498
SdaI CCTGCAGG 2 cut(s) 1276, 1330
SduI GDGCHC 3 cut(s) 69, 170, 636
SfaNI GCATC 2 cut(s) 427, 1132
SfcI CTRYAG 5 cut(s) 621, 1272, 1281, 1308, 1326
SinI GGWCC 7 cut(s) 44, 341, 752, 980, 1258, 1391, 1442
SmiMI CAYNNNNRTG 1 cut(s) 1253
SmlI CTYRAG 2 cut(s) 455, 673
SmoI CTYRAG 2 cut(s) 455, 673
SnaBI TACGTA 1 cut(s) 1631
SpeI ACTAGT 1 cut(s) 1193
Sse8387I CCTGCAGG 2 cut(s) 1276, 1330
SsiI CCGC 3 cut(s) 1211, 1251, 1458
SspI AATATT 1 cut(s) 954
SspMI CTAG 2 cut(s) 1194, 1365
StyD4I CCNGG 3 cut(s) 824, 1444, 1496
StyI CCWWGG 4 cut(s) 47, 594, 755, 1451
TaaI ACNGT 5 cut(s) 97, 295, 510, 515, 569
TaiI ACGT 2 cut(s) 492, 1633
TaqI TCGA 4 cut(s) 808, 1554, 1564, 1624
TatI WGTACW 4 cut(s) 5, 510, 1153, 1196
TfiI GAWTC 5 cut(s) 463, 687, 863, 1295, 1536
Tru1I TTAA 1 cut(s) 1590
Tru9I TTAA 1 cut(s) 1590
TscAI CASTG 3 cut(s) 387, 636, 1364
TseFI GTSAC 2 cut(s) 382, 920
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 2 cut(s) 382, 920
TspDTI ATGAA 5 cut(s) 248, 401, 1106, 1567, 1651
TspGWI ACGGA 2 cut(s) 96, 1626
TspRI CASTG 3 cut(s) 387, 636, 1364
VpaK11BI GGWCC 7 cut(s) 44, 341, 752, 980, 1258, 1391, 1442
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 3 cut(s) 242, 1113, 1228
XceI RCATGY 1 cut(s) 1160
XcmI CCANNNNNNNNNTGG 1 cut(s) 1252
XspI CTAG 2 cut(s) 1194, 1365
ZrmI AGTACT 2 cut(s) 7, 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.