Prupe.1G239900_v2.0.a1

Pectate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013798
Physical Location & Seq
Forward (+)
25403890 .. 25405921
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G239900.1

Sequence Viewer

Length: 1206 bp
ATGGCAATGCCACTCTCTCTTCTGCTTCTCTCTCTTCTTCTAATCCCAGCCTTTATTTCCTCTTCCCCAGTTCAAGATCCTGAACTTGTAATACAAGAAGTACAAAAGAGCATCAATGCATCAAGGAGAAATTTGGGTTATCTCTCATGTGGAACTGGAAACCCCATGGATGACTGCTGGAGATGTGACCCCAATTGGGAGAAGAATCGGCAACGGCTCGCCGATTGCGCAATTGGGTTTGGAAAGCATGCCATTGGAGGCAGAGATGGCAAAATTTATGTGGTCACAGACGCAGGGGATCATCCTGTGAACCCTAAACCAGGCACCCTCAGATATGGTGTGATCCAAGATCAGCCACTGTGGATCGTTTTCAAAGGTGACATGGTGATCAAGCTGAAGGAAGAGCTGATGATGAACTCGTTCAAGACCATCGACGGCAGAGGAGCCAGCGTCCACATTGCCGGTGGGCCCTGCATAACCATACAGTATGTGACCAACATTATAATTCATGGACTGAACATTCATGACTGCAAGCAAGGAGGAAATGCCTATGTGAGAGATTCACCTAGCCATTACGGCTGGAGGACTTTGTCTGATGGAGATGGAGTTTCAATTTTCGGTGGAAGCCATGTTTGGGTGGATCATTGCTCTCTGTCGAATTGCCGGGATGGGCTCATCGATGCCATCCATGGATCCACATCCATCACCATATCCAACAACTACATGACTCACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCCTACACACAGGACAAGAACATGCAAGTCACCATTGCCTTCAACCACTTTGGAGAAGGGCTTGTTCAGAGGATGCCAAGATGTAGACATGGGAATTTTCATGTGGTGAATAATGACTATACTCATTGGGAAATGTATGCCATTGGTGGCAGTGCCTCTCCAACCATCAACAGCCAGGGCAATAGGTTTCTGGCACCAAATGATAGATTCAATAAAGAGATCACTAAACATGAAGATGCACCACAGAAAGAGTGGAGCAAATGGAACTGGAGGTCTTCAGGAGATTTGCTGTTAAATGGAGCTTTCTTCACAGCATCTGGGGCCGGAGCTTCTTCTAGTTATGCCAGGGCATCGAGTTTGGGTGCAAGACCATCCTCACTAGTGAGTTCACTTACAGCTGGGGCAGGTTCACTCAAGTGCAGGAAGGGCTCGCGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko02024 map00040 map02024
Pfam Domains
Protein Families
Pec_lyase_C

Protein Analysis

402

Amino Acids

43.94

Weight (kDa)

8.58

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013798)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67750
fragaria_vesca FvH4_4g25110
malus_domestica MD13G1106200.v1.1 MD16G1106400.v1.1
prunus_persica Prupe.1G239900_v2.0.a1 Prupe.1G239900_v2.0.a1
pyrus_communis pycom13g09220 pycom16g09060
rosa_chinensis RchiOBHm_Chr4g0432291
rosa_laevigata RLG00000006855
rosa_multiflora Rmu_sc0001084.1_g000044
rosa_roxburghii Rroxscaffold_5G00373750
rosa_rugosa Rorug04G0256800
rosa_samantha Rh4BG320700 Rh4CG335900 Rh4DG316200
rosa_wichuraiana Rw4G027220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
Acc16I TGCGCA 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 1160
AccB1I GGYRCC 2 cut(s) 323, 958
AccI GTMKAC 1 cut(s) 850
AccII CGCG 1 cut(s) 1198
AclWI GGATC 7 cut(s) 71, 306, 337, 371, 648, 687, 700
AcsI RAATTY 3 cut(s) 130, 273, 859
AcuI CTGAAG 2 cut(s) 416, 1026
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 4 cut(s) 196, 320, 634, 739
AgsI TTSAA 6 cut(s) 74, 373, 424, 612, 808, 976
AhlI ACTAGT 1 cut(s) 1144
AjnI CCWGG 3 cut(s) 319, 939, 1109
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AleI CACNNNNGTG 1 cut(s) 1180
AluBI AGCT 5 cut(s) 394, 406, 1067, 1094, 1163
AluI AGCT 5 cut(s) 394, 406, 1067, 1094, 1163
AlwI GGATC 7 cut(s) 71, 306, 337, 371, 648, 687, 700
AlwNI CAGNNNCTG 2 cut(s) 358, 1082
AoxI GGCC 3 cut(s) 467, 754, 1086
ApaI GGGCCC 1 cut(s) 471
ApoI RAATTY 3 cut(s) 130, 273, 859
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 4 cut(s) 467, 468, 754, 1086
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 7 cut(s) 389, 397, 555, 697, 722, 787, 883
BaeGI GKGCMC 1 cut(s) 471
BamHI GGATCC 1 cut(s) 692
BanI GGYRCC 2 cut(s) 323, 958
BanII GRGCYC 3 cut(s) 471, 675, 1196
BbsI GAAGAC 1 cut(s) 1032
BccI CCATC 9 cut(s) 260, 437, 590, 596, 662, 692, 710, 938, 1144
BceAI ACGGC 3 cut(s) 230, 451, 592
BciT130I CCWGG 3 cut(s) 321, 941, 1111
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 665
BcuI ACTAGT 1 cut(s) 1144
BfaI CTAG 3 cut(s) 567, 1101, 1145
BfuAI ACCTGC 1 cut(s) 1160
BglI GCCNNNNNGGC 1 cut(s) 576
Bme1390I CCNGG 4 cut(s) 321, 665, 941, 1111
BmgT120I GGNCC 4 cut(s) 467, 468, 754, 1086
BmiI GGNNCC 6 cut(s) 325, 445, 469, 694, 960, 1087
BmrFI CCNGG 4 cut(s) 321, 665, 941, 1111
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 7 cut(s) 120, 128, 670, 828, 991, 1088, 1124
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 1032
BpmI CTGGAG 3 cut(s) 199, 601, 1054
BpuEI CTTGAG 1 cut(s) 1163
BpuMI CCSGG 1 cut(s) 665
Bsa29I ATCGAT 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 697
BsaJI CCNNGG 4 cut(s) 165, 688, 940, 1110
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 591, 621
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 320, 634, 739
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 3 cut(s) 68, 160, 1037
Bse3DI GCAATG 4 cut(s) 12, 456, 643, 798
Bse8I GATNNNNATC 1 cut(s) 697
BseBI CCWGG 3 cut(s) 321, 941, 1111
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 4 cut(s) 165, 688, 940, 1110
BseGI GGATG 7 cut(s) 175, 301, 673, 684, 698, 843, 1136
BseJI GATNNNNATC 1 cut(s) 697
BseLI CCNNNNNNNGG 4 cut(s) 196, 320, 634, 739
BseMI GCAATG 4 cut(s) 12, 456, 643, 798
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 3 cut(s) 68, 160, 1037
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 471
BseYI CCCAGC 2 cut(s) 46, 1163
BsgI GTGCAG 1 cut(s) 1204
Bsh1236I CGCG 1 cut(s) 1198
BshFI GGCC 3 cut(s) 469, 756, 1088
BshNI GGYRCC 2 cut(s) 323, 958
BshVI ATCGAT 1 cut(s) 678
BsiSI CCGG 3 cut(s) 462, 664, 1089
BslI CCNNNNNNNGG 4 cut(s) 196, 320, 634, 739
BsnI GGCC 3 cut(s) 469, 756, 1088
Bsp120I GGGCCC 1 cut(s) 467
Bsp1286I GDGCHC 3 cut(s) 471, 675, 1196
Bsp143I GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
Bsp19I CCATGG 2 cut(s) 165, 688
BspANI GGCC 3 cut(s) 469, 756, 1088
BspCNI CTCAG 1 cut(s) 342
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 1 cut(s) 1198
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 6 cut(s) 325, 445, 469, 694, 960, 1087
BspMI ACCTGC 1 cut(s) 1160
BspPI GGATC 7 cut(s) 71, 306, 337, 371, 648, 687, 700
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 323, 958
BsrDI GCAATG 4 cut(s) 12, 456, 643, 798
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 3 cut(s) 68, 160, 1037
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 4 cut(s) 165, 688, 940, 1110
BssMI GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
BssT1I CCWWGG 2 cut(s) 165, 688
Bst2UI CCWGG 3 cut(s) 321, 941, 1111
Bst4CI ACNGT 3 cut(s) 360, 486, 761
Bst6I CTCTTC 4 cut(s) 24, 39, 67, 396
BstC8I GCNNGC 5 cut(s) 219, 249, 448, 533, 1196
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 2 cut(s) 165, 688
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 7 cut(s) 175, 301, 673, 684, 698, 843, 1136
BstFNI CGCG 1 cut(s) 1198
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 9 cut(s) 79, 301, 345, 352, 366, 390, 643, 695, 987
BstMBI GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
BstMWI GCNNNNNNNGC 6 cut(s) 227, 267, 576, 1085, 1191, 1200
BstNI CCWGG 3 cut(s) 321, 941, 1111
BstNSI RCATGY 2 cut(s) 251, 790
BstSCI CCNGG 4 cut(s) 319, 663, 939, 1109
BstSLI GKGCMC 1 cut(s) 471
BstUI CGCG 1 cut(s) 1198
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 2 cut(s) 76, 692
BstYI RGATCY 2 cut(s) 76, 692
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 3 cut(s) 469, 756, 1088
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 2 cut(s) 165, 688
BtsCI GGATG 7 cut(s) 175, 301, 673, 684, 698, 843, 1136
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 3 cut(s) 356, 766, 922
BveI ACCTGC 1 cut(s) 1160
Cac8I GCNNGC 5 cut(s) 219, 249, 448, 533, 1196
CaiI CAGNNNCTG 2 cut(s) 358, 1082
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 4 cut(s) 467, 468, 754, 1086
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 2 cut(s) 299, 439
Csp6I GTAC 1 cut(s) 101
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 329
DpnI GATC 9 cut(s) 78, 300, 344, 351, 365, 389, 642, 694, 986
DpnII GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
Eam1104I CTCTTC 4 cut(s) 24, 39, 67, 396
EarI CTCTTC 4 cut(s) 24, 39, 67, 396
Eco130I CCWWGG 2 cut(s) 165, 688
Eco24I GRGCYC 3 cut(s) 471, 675, 1196
Eco57I CTGAAG 2 cut(s) 416, 1026
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 319, 939, 1109
EcoT14I CCWWGG 2 cut(s) 165, 688
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 3 cut(s) 471, 675, 1196
ErhI CCWWGG 2 cut(s) 165, 688
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 850
FokI GGATG 7 cut(s) 182, 288, 671, 680, 685, 850, 1123
FriOI GRGCYC 3 cut(s) 471, 675, 1196
FspBI CTAG 3 cut(s) 567, 1101, 1145
FspI TGCGCA 1 cut(s) 229
GlaI GCGC 1 cut(s) 229
GsaI CCCAGC 2 cut(s) 50, 1167
GsuI CTGGAG 3 cut(s) 199, 601, 1054
HaeIII GGCC 3 cut(s) 469, 756, 1088
HapII CCGG 3 cut(s) 462, 664, 1089
HgaI GACGC 2 cut(s) 299, 439
HhaI GCGC 1 cut(s) 230
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 5 cut(s) 205, 560, 727, 764, 972
HpaII CCGG 3 cut(s) 462, 664, 1089
HphI GGTGA 7 cut(s) 389, 397, 555, 697, 722, 787, 883
Hpy166II GTNNAC 5 cut(s) 310, 454, 851, 1154, 1175
Hpy188I TCNGA 3 cut(s) 332, 595, 834
Hpy188III TCNNGA 5 cut(s) 74, 80, 424, 524, 1044
Hpy8I GTNNAC 5 cut(s) 310, 454, 851, 1154, 1175
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 4 cut(s) 391, 814, 815, 1183
HpyCH4III ACNGT 3 cut(s) 360, 486, 761
HpyCH4V TGCA 7 cut(s) 119, 474, 531, 790, 1004, 1130, 1185
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 267, 576, 1085, 1191, 1200
HpyF3I CTNAG 1 cut(s) 329
HspAI GCGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 443, 1020, 1064, 1091
LweI GCATC 7 cut(s) 120, 128, 670, 828, 991, 1088, 1124
MaeI CTAG 3 cut(s) 567, 1101, 1145
MaeIII GTNAC 5 cut(s) 185, 283, 377, 490, 793
MalI GATC 9 cut(s) 78, 300, 344, 351, 365, 389, 642, 694, 986
MboI GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
MfeI CAATTG 2 cut(s) 193, 231
MflI RGATCY 2 cut(s) 76, 692
MhlI GDGCHC 3 cut(s) 471, 675, 1196
MluCI AATT 8 cut(s) 130, 193, 231, 273, 504, 612, 658, 859
MlyI GAGTC 1 cut(s) 721
MmeI TCCRAC 2 cut(s) 738, 950
Mph1103I ATGCAT 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 1 cut(s) 1058
MslI CAYNNNNRTG 2 cut(s) 999, 1180
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 3 cut(s) 462, 664, 1089
MspR9I CCNGG 4 cut(s) 321, 665, 941, 1111
MunI CAATTG 2 cut(s) 193, 231
MvaI CCWGG 3 cut(s) 321, 941, 1111
MvnI CGCG 1 cut(s) 1198
MwoI GCNNNNNNNGC 6 cut(s) 227, 267, 576, 1085, 1191, 1200
NciI CCSGG 1 cut(s) 665
NcoI CCATGG 2 cut(s) 165, 688
NdeII GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
NlaIV GGNNCC 6 cut(s) 325, 445, 469, 694, 960, 1087
NmuCI GTSAC 5 cut(s) 185, 283, 377, 490, 793
NsbI TGCGCA 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 2 cut(s) 251, 790
OliI CACNNNNGTG 1 cut(s) 1180
PaeI GCATGC 1 cut(s) 251
PagI TCATGA 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 4 cut(s) 205, 560, 764, 972
PflFI GACNNNGTC 1 cut(s) 589
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
PsiI TTATAA 1 cut(s) 503
Psp6I CCWGG 3 cut(s) 319, 939, 1109
PspFI CCCAGC 2 cut(s) 46, 1163
PspGI CCWGG 3 cut(s) 319, 939, 1109
PspN4I GGNNCC 6 cut(s) 325, 445, 469, 694, 960, 1087
PspOMI GGGCCC 1 cut(s) 467
PspPI GGNCC 4 cut(s) 467, 468, 754, 1086
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PstNI CAGNNNCTG 2 cut(s) 358, 1082
PsuI RGATCY 2 cut(s) 76, 692
PsyI GACNNNGTC 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 999, 1180
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 1058
Sau3AI GATC 9 cut(s) 76, 298, 342, 349, 363, 387, 640, 692, 984
Sau96I GGNCC 4 cut(s) 467, 468, 754, 1086
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 4 cut(s) 321, 665, 941, 1111
SduI GDGCHC 3 cut(s) 471, 675, 1196
SfaNI GCATC 7 cut(s) 120, 128, 670, 828, 991, 1088, 1124
SmiMI CAYNNNNRTG 2 cut(s) 999, 1180
SmlI CTYRAG 1 cut(s) 1178
SmoI CTYRAG 1 cut(s) 1178
SpeI ACTAGT 1 cut(s) 1144
SphI GCATGC 1 cut(s) 251
Sse9I AATT 8 cut(s) 130, 193, 231, 273, 504, 612, 658, 859
SspMI CTAG 3 cut(s) 567, 1101, 1145
StyD4I CCNGG 4 cut(s) 319, 663, 939, 1109
StyI CCWWGG 2 cut(s) 165, 688
TaaI ACNGT 3 cut(s) 360, 486, 761
TaqI TCGA 4 cut(s) 432, 656, 678, 1118
TasI AATT 8 cut(s) 130, 193, 231, 273, 504, 612, 658, 859
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 4 cut(s) 205, 560, 764, 972
Tru1I TTAA 1 cut(s) 1058
Tru9I TTAA 1 cut(s) 1058
TscAI CASTG 3 cut(s) 363, 766, 922
TseFI GTSAC 5 cut(s) 185, 283, 377, 490, 793
Tsp45I GTSAC 5 cut(s) 185, 283, 377, 490, 793
TspDTI ATGAA 5 cut(s) 428, 497, 512, 854, 1011
TspRI CASTG 3 cut(s) 363, 766, 922
Tth111I GACNNNGTC 1 cut(s) 589
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 3 cut(s) 130, 273, 859
XceI RCATGY 2 cut(s) 251, 790
XcmI CCANNNNNNNNNTGG 2 cut(s) 461, 1014
XmiI GTMKAC 1 cut(s) 850
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 3 cut(s) 567, 1101, 1145
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.