Prupe.1G358200_v2.0.a1

ADP-D-ribose binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017732
Physical Location & Seq
Reverse (-)
33144109 .. 33145942
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G358200.1

Sequence Viewer

Length: 666 bp
ATGAATATTTCTTCTCCTCCTCCTGTTACTGCTACACCTAGACTGTCTCTAACAGATCAGCAACATCTCATAGACAAACTTGAAGTTTTTAAGATTCAAGGTCGAGACAAACATGGTCAAAAGGTTCTCCGCATCGTCGGAAAGTTTTTTCCGGCTCGAAGCGTGAGCAACGAGGCTGTGAACAACTACTTGGAGGAGAAAATATTCCCAAATTTAGGGGAAAGGCCCTTCTCAGTGGTGTATTTGCACACGGATGTGAATCGCAGCGGCAACTTCCCTGGAATTTCGACCTTACGATCAATCTACGACGCTATTCCGATCACCCTCAAGGACCGTCTCCAAGCCGTTTACTTTGTCCACCCGGGTTTACAGGCCAGACTCTTCCTCGCCACCTTTGGTCGTCTCCTCTTCAAGTCAGGGTTGTGCAAGAAGCTAAAGTATGTGAAGAGGCTGGAATTTTTGTGGGACCAGGTGCGGAGGAATGAGGTGGAGGTTCCGGAGTTTGTGTACGATCACGATGAGGAGCTGGAGTACCGTCCGATGATGGAGTATGGGTTAGAGAGTGATCATCCGAGACCGAGGGTCTACGTTGCACCTTGTACGTCTTCTACGTCCATGATGGACTCTCCCTTTGTTTCCATGTACTCCATGCGTTGTATCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0010033 GO:0032526 GO:0033993 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2 Macro

Protein Analysis

222

Amino Acids

25.54

Weight (kDa)

8.91

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017732)

Species Orthologous Gene IDs
malus_domestica MD08G1006200.v1.1 MD15G1005600.v1.1
prunus_persica Prupe.1G358200_v2.0.a1
pyrus_communis pycom15g00400
rosa_chinensis RchiOBHm_Chr6g0303811
rosa_laevigata RLG00000011042
rosa_multiflora Rmu_sc0012878.1_g000003
rosa_roxburghii Rroxscaffold_7G00164390
rosa_rugosa Rorug06G0325000
rosa_samantha Rh6AG439300 Rh6BG463700
rosa_wichuraiana Rw6G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 3 cut(s) 130, 267, 475
AcsI RAATTY 3 cut(s) 211, 282, 455
AfaI GTAC 4 cut(s) 509, 533, 601, 644
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 83, 98, 412
AhdI GACNNNNNGTC 1 cut(s) 581
AjnI CCWGG 2 cut(s) 277, 468
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 2 cut(s) 433, 526
AluI AGCT 2 cut(s) 433, 526
Alw26I GTCTC 5 cut(s) 51, 99, 341, 407, 568
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 496
AoxI GGCC 2 cut(s) 224, 372
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 3 cut(s) 211, 282, 455
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 225, 331, 466
AsuC2I CCSGG 2 cut(s) 362, 363
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 2 cut(s) 331, 466
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 276
BccI CCATC 2 cut(s) 538, 613
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 279, 470
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 2 cut(s) 362, 363
BcoDI GTCTC 5 cut(s) 51, 99, 341, 407, 568
BfaI CTAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 265, 268
BlsI GCNGC 2 cut(s) 266, 269
Bme1390I CCNGG 4 cut(s) 279, 362, 363, 470
Bme18I GGWCC 2 cut(s) 331, 466
BmeRI GACNNNNNGTC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 3 cut(s) 225, 331, 466
BmiI GGNNCC 2 cut(s) 467, 495
BmrFI CCNGG 4 cut(s) 279, 362, 363, 470
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 597
BpmI CTGGAG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 2 cut(s) 362, 363
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 277, 361, 578
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 6 cut(s) 491, 515, 521, 539, 545, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 496
BseBI CCWGG 2 cut(s) 279, 470
BseDI CCNNGG 3 cut(s) 277, 361, 578
BseGI GGATG 2 cut(s) 259, 568
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 5 cut(s) 6, 9, 209, 395, 536
BseXI GCAGC 1 cut(s) 276
BshFI GGCC 2 cut(s) 226, 374
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 3 cut(s) 152, 362, 497
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 5 cut(s) 51, 99, 341, 407, 568
BsmBI CGTCTC 2 cut(s) 341, 407
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 2 cut(s) 226, 374
Bso31I GGTCTC 1 cut(s) 568
BsoBI CYCGRG 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 496
Bsp143I GATC 5 cut(s) 55, 296, 318, 511, 565
BspACI CCGC 3 cut(s) 130, 267, 475
BspANI GGCC 2 cut(s) 226, 374
BspCNI CTCAG 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 467, 495
BspTNI GGTCTC 1 cut(s) 568
BssECI CCNNGG 3 cut(s) 277, 361, 578
BssMI GATC 5 cut(s) 55, 296, 318, 511, 565
Bst2UI CCWGG 2 cut(s) 279, 470
Bst4CI ACNGT 3 cut(s) 45, 335, 536
Bst6I CTCTTC 3 cut(s) 386, 413, 440
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 259, 568
BstKTI GATC 5 cut(s) 58, 299, 321, 514, 568
BstMAI GTCTC 5 cut(s) 51, 99, 341, 407, 568
BstMBI GATC 5 cut(s) 55, 296, 318, 511, 565
BstNI CCWGG 2 cut(s) 279, 470
BstSCI CCNGG 4 cut(s) 277, 360, 361, 468
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 597
BsuRI GGCC 2 cut(s) 226, 374
BtsCI GGATG 2 cut(s) 259, 568
BtsIMutI CAGTG 1 cut(s) 240
Cfr13I GGNCC 3 cut(s) 225, 331, 466
Cfr9I CCCGGG 1 cut(s) 361
CseI GACGC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 468
Csp6I GTAC 4 cut(s) 508, 532, 600, 643
CviAII CATG 4 cut(s) 113, 616, 640, 649
CviJI RGCY 8 cut(s) 155, 176, 226, 344, 374, 433, 451, 526
CviKI_1 RGCY 8 cut(s) 155, 176, 226, 344, 374, 433, 451, 526
CviQI GTAC 4 cut(s) 508, 532, 600, 643
DdeI CTNAG 1 cut(s) 232
DpnI GATC 5 cut(s) 57, 298, 320, 513, 567
DpnII GATC 5 cut(s) 55, 296, 318, 511, 565
DriI GACNNNNNGTC 1 cut(s) 581
Eam1104I CTCTTC 3 cut(s) 386, 413, 440
Eam1105I GACNNNNNGTC 1 cut(s) 581
EarI CTCTTC 3 cut(s) 386, 413, 440
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 331, 466
Eco88I CYCGRG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 277, 468
Esp3I CGTCTC 2 cut(s) 341, 407
FaeI CATG 4 cut(s) 116, 619, 643, 652
FaiI YATR 8 cut(s) 71, 114, 441, 552, 617, 641, 650, 664
FaqI GGGAC 1 cut(s) 479
FatI CATG 4 cut(s) 112, 615, 639, 648
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 2 cut(s) 265, 268
FokI GGATG 2 cut(s) 266, 555
Fsp4HI GCNGC 2 cut(s) 265, 268
FspBI CTAG 1 cut(s) 39
GluI GCNGC 2 cut(s) 265, 268
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 2 cut(s) 226, 374
HapII CCGG 3 cut(s) 152, 362, 497
HgaI GACGC 1 cut(s) 317
Hin1II CATG 4 cut(s) 116, 619, 643, 652
HinfI GANTC 4 cut(s) 94, 259, 378, 623
HpaII CCGG 3 cut(s) 152, 362, 497
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 6 cut(s) 181, 349, 358, 368, 508, 586
Hpy188I TCNGA 4 cut(s) 140, 318, 540, 573
Hpy188III TCNNGA 3 cut(s) 104, 497, 515
Hpy8I GTNNAC 6 cut(s) 181, 349, 358, 368, 508, 586
Hpy99I CGWCG 2 cut(s) 140, 311
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 45, 335, 536
HpyCH4IV ACGT 3 cut(s) 588, 602, 611
HpyCH4V TGCA 3 cut(s) 247, 426, 593
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 3 cut(s) 588, 602, 611
Hsp92II CATG 4 cut(s) 116, 619, 643, 652
Kpn2I TCCGGA 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 5 cut(s) 55, 296, 318, 511, 565
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 1 cut(s) 141
MabI ACCWGGT 1 cut(s) 468
MaeI CTAG 1 cut(s) 39
MaeII ACGT 3 cut(s) 588, 602, 611
MaeIII GTNAC 1 cut(s) 25
MalI GATC 5 cut(s) 57, 298, 320, 513, 567
MboI GATC 5 cut(s) 55, 296, 318, 511, 565
MboII GAAGA 5 cut(s) 3, 373, 400, 457, 597
MluCI AATT 3 cut(s) 211, 282, 455
MlyI GAGTC 2 cut(s) 372, 617
MmeI TCCRAC 1 cut(s) 118
MroI TCCGGA 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 252, 254
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 3 cut(s) 152, 362, 497
MspR9I CCNGG 4 cut(s) 279, 362, 363, 470
MvaI CCWGG 2 cut(s) 279, 470
NciI CCSGG 2 cut(s) 362, 363
NdeII GATC 5 cut(s) 55, 296, 318, 511, 565
NlaIII CATG 4 cut(s) 116, 619, 643, 652
NlaIV GGNNCC 2 cut(s) 467, 495
OliI CACNNNNGTG 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 94, 259
PkrI GCNGC 2 cut(s) 266, 269
PleI GAGTC 2 cut(s) 372, 617
PpsI GAGTC 2 cut(s) 372, 617
Psp6I CCWGG 2 cut(s) 277, 468
PspGI CCWGG 2 cut(s) 277, 468
PspN4I GGNNCC 2 cut(s) 467, 495
PspPI GGNCC 3 cut(s) 225, 331, 466
RsaI GTAC 4 cut(s) 509, 533, 601, 644
RsaNI GTAC 4 cut(s) 508, 532, 600, 643
RseI CAYNNNNRTG 2 cut(s) 252, 254
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 265, 268
Sau3AI GATC 5 cut(s) 55, 296, 318, 511, 565
Sau96I GGNCC 3 cut(s) 225, 331, 466
SchI GAGTC 2 cut(s) 372, 617
ScrFI CCNGG 4 cut(s) 279, 362, 363, 470
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 2 cut(s) 331, 466
SmaI CCCGGG 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 252, 254
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 211, 282, 455
SsiI CCGC 3 cut(s) 130, 267, 475
SspI AATATT 2 cut(s) 7, 204
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 277, 360, 361, 468
TaaI ACNGT 3 cut(s) 45, 335, 536
TaiI ACGT 3 cut(s) 591, 605, 614
TaqI TCGA 3 cut(s) 103, 157, 287
TaqII GACCGA 1 cut(s) 592
TasI AATT 3 cut(s) 211, 282, 455
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 94, 259
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 266
TspMI CCCGGG 1 cut(s) 361
TspRI CASTG 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 331, 466
XapI RAATTY 3 cut(s) 211, 282, 455
XmaI CCCGGG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 585
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.