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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24200 AT4G24200 |
| fragaria_vesca | FvH4_2g38250 FvH4_2g38250 |
| malus_domestica | MD08G1010900.v1.1 MD15G1010900.v1.1 |
| prunus_persica | Prupe.1G363500_v2.0.a1 |
| pyrus_communis | pycom08g00970 pycom15g00930 |
| rosa_chinensis | RchiOBHm_Chr6g0303121 |
| rosa_laevigata | RLG00000011106 |
| rosa_multiflora | Rmu_sc0008911.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00165000 |
| rosa_rugosa | Rorug06G0319200 |
| rosa_samantha | Rh6AG433200 Rh6BG469500 Rh6CG445500 Rh6DG432300 |
| rosa_wichuraiana | Rw6G037550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 580, 2832 |
| AccB1I | GGYRCC | 1 cut(s) | 2814 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2927 |
| AciI | CCGC | 5 cut(s) | 165, 340, 1544, 2666, 2838 |
| AclWI | GGATC | 8 cut(s) | 365, 417, 701, 1106, 1764, 1873, 2115, 2862 |
| AcoI | YGGCCR | 2 cut(s) | 385, 2188 |
| AcsI | RAATTY | 4 cut(s) | 1000, 2028, 2245, 2767 |
| AcuI | CTGAAG | 8 cut(s) | 336, 516, 588, 966, 1431, 1689, 2049, 2337 |
| AcyI | GRCGYC | 1 cut(s) | 2648 |
| AfaI | GTAC | 6 cut(s) | 367, 529, 544, 639, 2374, 2531 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 138, 139, 597, 2525, 2605, 2904, 2927 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1651 |
| AhlI | ACTAGT | 1 cut(s) | 1877 |
| AjiI | CACGTC | 1 cut(s) | 2747 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1777, 1809 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2153, 2185, 2386, 2418 |
| Alw21I | GWGCWC | 2 cut(s) | 1745, 2626 |
| Alw26I | GTCTC | 8 cut(s) | 63, 412, 1241, 1780, 1960, 2435, 2506, 2655 |
| AlwI | GGATC | 8 cut(s) | 365, 417, 701, 1106, 1764, 1873, 2115, 2862 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 572, 989, 1814, 1969 |
| Ama87I | CYCGRG | 4 cut(s) | 60, 576, 2376, 2803 |
| ApaI | GGGCCC | 1 cut(s) | 2742 |
| ApoI | RAATTY | 4 cut(s) | 1000, 2028, 2245, 2767 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 860, 892, 1190, 1222 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 793 |
| AsuC2I | CCSGG | 2 cut(s) | 133, 1763 |
| AsuHPI | GGTGA | 7 cut(s) | 134, 1187, 1524, 1675, 1931, 2144, 2676 |
| AsuNHI | GCTAGC | 1 cut(s) | 152 |
| AvaI | CYCGRG | 4 cut(s) | 60, 576, 2376, 2803 |
| AvaII | GGWCC | 4 cut(s) | 569, 733, 2297, 2582 |
| AxyI | CCTNAGG | 1 cut(s) | 2810 |
| BaeGI | GKGCMC | 3 cut(s) | 313, 1622, 2742 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2364, 2397 |
| BalI | TGGCCA | 1 cut(s) | 387 |
| BanI | GGYRCC | 1 cut(s) | 2814 |
| BanII | GRGCYC | 3 cut(s) | 48, 2626, 2742 |
| BbsI | GAAGAC | 2 cut(s) | 371, 2301 |
| Bbv12I | GWGCWC | 2 cut(s) | 1745, 2626 |
| BbvCI | CCTCAGC | 3 cut(s) | 459, 2001, 2569 |
| BceAI | ACGGC | 1 cut(s) | 2175 |
| BclI | TGATCA | 1 cut(s) | 1342 |
| BcnI | CCSGG | 2 cut(s) | 133, 1763 |
| BcoDI | GTCTC | 8 cut(s) | 63, 412, 1241, 1780, 1960, 2435, 2506, 2655 |
| BcuI | ACTAGT | 1 cut(s) | 1877 |
| BfaI | CTAG | 8 cut(s) | 153, 620, 810, 1235, 1370, 1878, 2616, 2754 |
| BfmI | CTRYAG | 6 cut(s) | 1161, 1435, 1935, 2286, 2445, 2953 |
| BfuAI | ACCTGC | 2 cut(s) | 580, 2832 |
| BglII | AGATCT | 1 cut(s) | 698 |
| BlpI | GCTNAGC | 1 cut(s) | 830 |
| BmcAI | AGTACT | 1 cut(s) | 529 |
| Bme18I | GGWCC | 4 cut(s) | 569, 733, 2297, 2582 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1651 |
| BmeT110I | CYCGRG | 4 cut(s) | 60, 576, 2376, 2803 |
| BmgBI | CACGTC | 1 cut(s) | 2747 |
| BmiI | GGNNCC | 8 cut(s) | 735, 951, 966, 1830, 1942, 2740, 2816, 2919 |
| BmrI | ACTGGG | 1 cut(s) | 2674 |
| BmtI | GCTAGC | 1 cut(s) | 156 |
| BmuI | ACTGGG | 1 cut(s) | 2674 |
| BpiI | GAAGAC | 2 cut(s) | 371, 2301 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1442, 1474 |
| BpmI | CTGGAG | 2 cut(s) | 382, 687 |
| Bpu10I | CCTNAGC | 3 cut(s) | 459, 2001, 2569 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 830 |
| BpuEI | CTTGAG | 2 cut(s) | 1662, 2722 |
| BpuMI | CCSGG | 2 cut(s) | 133, 1763 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1341, 1728, 2112 |
| BsaHI | GRCGYC | 1 cut(s) | 2648 |
| BsaI | GGTCTC | 1 cut(s) | 2506 |
| BsaJI | CCNNGG | 6 cut(s) | 168, 968, 1005, 1270, 2418, 2978 |
| BsaWI | WCCGGW | 2 cut(s) | 1208, 2344 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2386, 2416, 2500, 2530, 2613, 2643 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 138, 139, 597, 2525, 2605, 2904, 2927 |
| Bse1I | ACTGG | 7 cut(s) | 818, 1802, 1947, 1974, 2033, 2544, 2680 |
| Bse21I | CCTNAGG | 1 cut(s) | 2810 |
| Bse3DI | GCAATG | 2 cut(s) | 841, 1150 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1341, 1728, 2112 |
| BseDI | CCNNGG | 6 cut(s) | 168, 968, 1005, 1270, 2418, 2978 |
| BseGI | GGATG | 7 cut(s) | 451, 901, 1135, 1266, 1362, 2339, 2353 |
| BseJI | GATNNNNATC | 3 cut(s) | 1341, 1728, 2112 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 138, 139, 597, 2525, 2605, 2904, 2927 |
| BseMI | GCAATG | 2 cut(s) | 841, 1150 |
| BseNI | ACTGG | 7 cut(s) | 818, 1802, 1947, 1974, 2033, 2544, 2680 |
| BseRI | GAGGAG | 5 cut(s) | 83, 1890, 2394, 2557, 2634 |
| BseSI | GKGCMC | 3 cut(s) | 313, 1622, 2742 |
| BseYI | CCCAGC | 2 cut(s) | 2735, 2931 |
| BshNI | GGYRCC | 1 cut(s) | 2814 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1745, 2626 |
| BsiHKCI | CYCGRG | 4 cut(s) | 60, 576, 2376, 2803 |
| BsiSI | CCGG | 4 cut(s) | 133, 1209, 1763, 2345 |
| BslFI | GGGAC | 5 cut(s) | 574, 640, 1111, 2401, 2813 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 138, 139, 597, 2525, 2605, 2904, 2927 |
| BsmAI | GTCTC | 8 cut(s) | 63, 412, 1241, 1780, 1960, 2435, 2506, 2655 |
| BsmBI | CGTCTC | 2 cut(s) | 63, 2655 |
| BsmFI | GGGAC | 5 cut(s) | 574, 640, 1111, 2401, 2813 |
| BsmI | GAATGC | 2 cut(s) | 460, 1184 |
| Bso31I | GGTCTC | 1 cut(s) | 2506 |
| BsoBI | CYCGRG | 4 cut(s) | 60, 576, 2376, 2803 |
| Bsp120I | GGGCCC | 1 cut(s) | 2738 |
| Bsp1286I | GDGCHC | 6 cut(s) | 48, 313, 1622, 1745, 2626, 2742 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 830 |
| Bsp19I | CCATGG | 1 cut(s) | 2978 |
| BspACI | CCGC | 5 cut(s) | 165, 340, 1544, 2666, 2838 |
| BspHI | TCATGA | 1 cut(s) | 1345 |
| BspLI | GGNNCC | 8 cut(s) | 735, 951, 966, 1830, 1942, 2740, 2816, 2919 |
| BspMAI | CTGCAG | 2 cut(s) | 1439, 2449 |
| BspMI | ACCTGC | 2 cut(s) | 580, 2832 |
| BspOI | GCTAGC | 1 cut(s) | 156 |
| BspPI | GGATC | 8 cut(s) | 365, 417, 701, 1106, 1764, 1873, 2115, 2862 |
| BspT107I | GGYRCC | 1 cut(s) | 2814 |
| BspTNI | GGTCTC | 1 cut(s) | 2506 |
| BsrDI | GCAATG | 2 cut(s) | 841, 1150 |
| BsrI | ACTGG | 7 cut(s) | 818, 1802, 1947, 1974, 2033, 2544, 2680 |
| BssECI | CCNNGG | 6 cut(s) | 168, 968, 1005, 1270, 2418, 2978 |
| BssNI | GRCGYC | 1 cut(s) | 2648 |
| BssT1I | CCWWGG | 1 cut(s) | 2978 |
| Bst4CI | ACNGT | 8 cut(s) | 370, 654, 911, 1165, 2169, 2500, 2688, 2899 |
| Bst6I | CTCTTC | 4 cut(s) | 279, 368, 949, 1281 |
| BstACI | GRCGYC | 1 cut(s) | 2648 |
| BstC8I | GCNNGC | 1 cut(s) | 154 |
| BstDSI | CCRYGG | 2 cut(s) | 168, 2978 |
| BstF5I | GGATG | 7 cut(s) | 451, 901, 1135, 1266, 1362, 2339, 2353 |
| BstMAI | GTCTC | 8 cut(s) | 63, 412, 1241, 1780, 1960, 2435, 2506, 2655 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 393, 1880, 2196 |
| BstNSI | RCATGY | 2 cut(s) | 1225, 1301 |
| BstSFI | CTRYAG | 6 cut(s) | 1161, 1435, 1935, 2286, 2445, 2953 |
| BstSLI | GKGCMC | 3 cut(s) | 313, 1622, 2742 |
| BstV2I | GAAGAC | 2 cut(s) | 371, 2301 |
| BstX2I | RGATCY | 5 cut(s) | 357, 698, 706, 1865, 2107 |
| BstYI | RGATCY | 5 cut(s) | 357, 698, 706, 1865, 2107 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2810 |
| BtgI | CCRYGG | 2 cut(s) | 168, 2978 |
| BtgZI | GCGATG | 2 cut(s) | 1320, 2723 |
| BtrI | CACGTC | 1 cut(s) | 2747 |
| BtsCI | GGATG | 7 cut(s) | 451, 901, 1135, 1266, 1362, 2339, 2353 |
| BtsI | GCAGTG | 1 cut(s) | 143 |
| BtsIMutI | CAGTG | 3 cut(s) | 143, 1954, 2040 |
| BveI | ACCTGC | 2 cut(s) | 580, 2832 |
| Cac8I | GCNNGC | 1 cut(s) | 154 |
| CaiI | CAGNNNCTG | 4 cut(s) | 572, 989, 1814, 1969 |
| CciI | TCATGA | 1 cut(s) | 1345 |
| CseI | GACGC | 2 cut(s) | 1373, 2637 |
| CsiI | ACCWGGT | 3 cut(s) | 2299, 2584, 2719 |
| Csp6I | GTAC | 6 cut(s) | 366, 528, 543, 638, 2373, 2530 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 906, 941 |
| CviQI | GTAC | 6 cut(s) | 366, 528, 543, 638, 2373, 2530 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1651 |
| EaeI | YGGCCR | 2 cut(s) | 385, 2188 |
| Eam1104I | CTCTTC | 4 cut(s) | 279, 368, 949, 1281 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1651 |
| EarI | CTCTTC | 4 cut(s) | 279, 368, 949, 1281 |
| EciI | GGCGGA | 1 cut(s) | 2655 |
| Ecl136II | GAGCTC | 1 cut(s) | 2624 |
| Eco130I | CCWWGG | 1 cut(s) | 2978 |
| Eco24I | GRGCYC | 3 cut(s) | 48, 2626, 2742 |
| Eco31I | GGTCTC | 1 cut(s) | 2506 |
| Eco47I | GGWCC | 4 cut(s) | 569, 733, 2297, 2582 |
| Eco53kI | GAGCTC | 1 cut(s) | 2624 |
| Eco57I | CTGAAG | 8 cut(s) | 336, 516, 588, 966, 1431, 1689, 2049, 2337 |
| Eco81I | CCTNAGG | 1 cut(s) | 2810 |
| Eco88I | CYCGRG | 4 cut(s) | 60, 576, 2376, 2803 |
| EcoICRI | GAGCTC | 1 cut(s) | 2624 |
| EcoO109I | RGGNCCY | 4 cut(s) | 569, 950, 2549, 2739 |
| EcoRI | GAATTC | 1 cut(s) | 2767 |
| EcoT14I | CCWWGG | 1 cut(s) | 2978 |
| EcoT22I | ATGCAT | 1 cut(s) | 2329 |
| EcoT38I | GRGCYC | 3 cut(s) | 48, 2626, 2742 |
| ErhI | CCWWGG | 1 cut(s) | 2978 |
| Esp3I | CGTCTC | 2 cut(s) | 63, 2655 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 171, 203 |
| FaqI | GGGAC | 5 cut(s) | 574, 640, 1111, 2401, 2813 |
| FauNDI | CATATG | 1 cut(s) | 2329 |
| FbaI | TGATCA | 1 cut(s) | 1342 |
| FokI | GGATG | 7 cut(s) | 458, 908, 1142, 1273, 1369, 2346, 2360 |
| FriOI | GRGCYC | 3 cut(s) | 48, 2626, 2742 |
| FspBI | CTAG | 8 cut(s) | 153, 620, 810, 1235, 1370, 1878, 2616, 2754 |
| GsaI | CCCAGC | 2 cut(s) | 2739, 2935 |
| GsuI | CTGGAG | 2 cut(s) | 382, 687 |
| HapII | CCGG | 4 cut(s) | 133, 1209, 1763, 2345 |
| HgaI | GACGC | 2 cut(s) | 1373, 2637 |
| Hin1I | GRCGYC | 1 cut(s) | 2648 |
| HincII | GTYRAC | 2 cut(s) | 907, 1363 |
| HindII | GTYRAC | 2 cut(s) | 907, 1363 |
| HpaII | CCGG | 4 cut(s) | 133, 1209, 1763, 2345 |
| HphI | GGTGA | 7 cut(s) | 134, 1187, 1524, 1675, 1931, 2144, 2676 |
| Hpy166II | GTNNAC | 5 cut(s) | 733, 907, 1363, 1469, 1820 |
| Hpy8I | GTNNAC | 5 cut(s) | 733, 907, 1363, 1469, 1820 |
| Hpy99I | CGWCG | 1 cut(s) | 2196 |
| HpyAV | CCTTC | 8 cut(s) | 1088, 1457, 2057, 2061, 2156, 2244, 2895, 2908 |
| HpyCH4III | ACNGT | 8 cut(s) | 370, 654, 911, 1165, 2169, 2500, 2688, 2899 |
| HpyCH4IV | ACGT | 1 cut(s) | 2746 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 393, 1880, 2196 |
| HpySE526I | ACGT | 1 cut(s) | 2746 |
| Hsp92I | GRCGYC | 1 cut(s) | 2648 |
| Ksp22I | TGATCA | 1 cut(s) | 1342 |
| LmnI | GCTCC | 7 cut(s) | 70, 964, 1274, 1294, 2407, 2621, 2629 |
| MabI | ACCWGGT | 3 cut(s) | 2299, 2584, 2719 |
| MaeI | CTAG | 8 cut(s) | 153, 620, 810, 1235, 1370, 1878, 2616, 2754 |
| MaeII | ACGT | 1 cut(s) | 2746 |
| MaeIII | GTNAC | 5 cut(s) | 303, 931, 1663, 1919, 2682 |
| MfeI | CAATTG | 2 cut(s) | 159, 798 |
| MflI | RGATCY | 5 cut(s) | 357, 698, 706, 1865, 2107 |
| MhlI | GDGCHC | 6 cut(s) | 48, 313, 1622, 1745, 2626, 2742 |
| MlsI | TGGCCA | 1 cut(s) | 387 |
| MluNI | TGGCCA | 1 cut(s) | 387 |
| MlyI | GAGTC | 8 cut(s) | 207, 296, 385, 1464, 1487, 1661, 2086, 2795 |
| MmeI | TCCRAC | 1 cut(s) | 876 |
| Mox20I | TGGCCA | 1 cut(s) | 387 |
| Mph1103I | ATGCAT | 1 cut(s) | 2329 |
| MroXI | GAANNNNTTC | 1 cut(s) | 793 |
| MscI | TGGCCA | 1 cut(s) | 387 |
| MseI | TTAA | 6 cut(s) | 26, 237, 596, 1044, 2153, 2174 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1350, 2332, 2983 |
| Msp20I | TGGCCA | 1 cut(s) | 387 |
| MspA1I | CMGCKG | 2 cut(s) | 1103, 1811 |
| MspI | CCGG | 4 cut(s) | 133, 1209, 1763, 2345 |
| MunI | CAATTG | 2 cut(s) | 159, 798 |
| Mva1269I | GAATGC | 2 cut(s) | 460, 1184 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 393, 1880, 2196 |
| NciI | CCSGG | 2 cut(s) | 133, 1763 |
| NcoI | CCATGG | 1 cut(s) | 2978 |
| NdeI | CATATG | 1 cut(s) | 2329 |
| NheI | GCTAGC | 1 cut(s) | 152 |
| NlaIV | GGNNCC | 8 cut(s) | 735, 951, 966, 1830, 1942, 2740, 2816, 2919 |
| NmeAIII | GCCGAG | 1 cut(s) | 1916 |
| NmuCI | GTSAC | 4 cut(s) | 931, 1663, 1919, 2682 |
| NsiI | ATGCAT | 1 cut(s) | 2329 |
| NspI | RCATGY | 2 cut(s) | 1225, 1301 |
| PaeR7I | CTCGAG | 3 cut(s) | 60, 576, 2376 |
| PagI | TCATGA | 1 cut(s) | 1345 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2188 |
| PctI | GAATGC | 2 cut(s) | 460, 1184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 793 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2927 |
| PfoI | TCCNGGA | 1 cut(s) | 1256 |
| PleI | GAGTC | 8 cut(s) | 207, 295, 384, 1464, 1487, 1660, 2085, 2795 |
| PpsI | GAGTC | 8 cut(s) | 207, 295, 384, 1464, 1487, 1660, 2085, 2795 |
| PpuMI | RGGWCCY | 1 cut(s) | 569 |
| Psp124BI | GAGCTC | 1 cut(s) | 2626 |
| Psp5II | RGGWCCY | 1 cut(s) | 569 |
| PspFI | CCCAGC | 2 cut(s) | 2735, 2931 |
| PspN4I | GGNNCC | 8 cut(s) | 735, 951, 966, 1830, 1942, 2740, 2816, 2919 |
| PspOMI | GGGCCC | 1 cut(s) | 2738 |
| PspPPI | RGGWCCY | 1 cut(s) | 569 |
| PspXI | VCTCGAGB | 1 cut(s) | 2376 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1500, 1532 |
| PstI | CTGCAG | 2 cut(s) | 1439, 2449 |
| PstNI | CAGNNNCTG | 4 cut(s) | 572, 989, 1814, 1969 |
| PsuI | RGATCY | 5 cut(s) | 357, 698, 706, 1865, 2107 |
| PvuII | CAGCTG | 2 cut(s) | 1103, 1811 |
| RsaI | GTAC | 6 cut(s) | 367, 529, 544, 639, 2374, 2531 |
| RsaNI | GTAC | 6 cut(s) | 366, 528, 543, 638, 2373, 2530 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1350, 2332, 2983 |
| SacI | GAGCTC | 1 cut(s) | 2626 |
| SaqAI | TTAA | 6 cut(s) | 26, 237, 596, 1044, 2153, 2174 |
| ScaI | AGTACT | 1 cut(s) | 529 |
| SchI | GAGTC | 8 cut(s) | 207, 296, 385, 1464, 1487, 1661, 2086, 2795 |
| SduI | GDGCHC | 6 cut(s) | 48, 313, 1622, 1745, 2626, 2742 |
| SexAI | ACCWGGT | 3 cut(s) | 2299, 2584, 2719 |
| SfcI | CTRYAG | 6 cut(s) | 1161, 1435, 1935, 2286, 2445, 2953 |
| Sfr274I | CTCGAG | 3 cut(s) | 60, 576, 2376 |
| SinI | GGWCC | 4 cut(s) | 569, 733, 2297, 2582 |
| SlaI | CTCGAG | 3 cut(s) | 60, 576, 2376 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1350, 2332, 2983 |
| SmlI | CTYRAG | 5 cut(s) | 60, 576, 1677, 2376, 2701 |
| SmoI | CTYRAG | 5 cut(s) | 60, 576, 1677, 2376, 2701 |
| SpeI | ACTAGT | 1 cut(s) | 1877 |
| SsiI | CCGC | 5 cut(s) | 165, 340, 1544, 2666, 2838 |
| SspMI | CTAG | 8 cut(s) | 153, 620, 810, 1235, 1370, 1878, 2616, 2754 |
| SstI | GAGCTC | 1 cut(s) | 2626 |
| StyI | CCWWGG | 1 cut(s) | 2978 |
| TaaI | ACNGT | 8 cut(s) | 370, 654, 911, 1165, 2169, 2500, 2688, 2899 |
| TaiI | ACGT | 1 cut(s) | 2749 |
| TaqI | TCGA | 7 cut(s) | 9, 61, 412, 577, 866, 1381, 2377 |
| TatI | WGTACW | 2 cut(s) | 527, 637 |
| TauI | GCSGC | 3 cut(s) | 167, 1547, 2841 |
| Tru1I | TTAA | 6 cut(s) | 26, 237, 596, 1044, 2153, 2174 |
| Tru9I | TTAA | 6 cut(s) | 26, 237, 596, 1044, 2153, 2174 |
| TscAI | CASTG | 3 cut(s) | 143, 1954, 2040 |
| TseFI | GTSAC | 4 cut(s) | 931, 1663, 1919, 2682 |
| Tsp45I | GTSAC | 4 cut(s) | 931, 1663, 1919, 2682 |
| TspGWI | ACGGA | 2 cut(s) | 185, 2643 |
| TspRI | CASTG | 3 cut(s) | 143, 1954, 2040 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2927 |
| VpaK11BI | GGWCC | 4 cut(s) | 569, 733, 2297, 2582 |
| XapI | RAATTY | 4 cut(s) | 1000, 2028, 2245, 2767 |
| XbaI | TCTAGA | 2 cut(s) | 1369, 2615 |
| XceI | RCATGY | 2 cut(s) | 1225, 1301 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2928 |
| XhoI | CTCGAG | 3 cut(s) | 60, 576, 2376 |
| XmnI | GAANNNNTTC | 1 cut(s) | 793 |
| XspI | CTAG | 8 cut(s) | 153, 620, 810, 1235, 1370, 1878, 2616, 2754 |
| ZrmI | AGTACT | 1 cut(s) | 529 |
| Zsp2I | ATGCAT | 1 cut(s) | 2329 |