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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24200 AT4G24200 |
| fragaria_vesca | FvH4_2g38250 FvH4_2g38250 |
| malus_domestica | MD08G1010900.v1.1 MD15G1010900.v1.1 |
| prunus_persica | Prupe.1G363500_v2.0.a1 |
| pyrus_communis | pycom08g00970 pycom15g00930 |
| rosa_chinensis | RchiOBHm_Chr6g0303121 |
| rosa_laevigata | RLG00000011106 |
| rosa_multiflora | Rmu_sc0008911.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00165000 |
| rosa_rugosa | Rorug06G0319200 |
| rosa_samantha | Rh6AG433200 Rh6BG469500 Rh6CG445500 Rh6DG432300 |
| rosa_wichuraiana | Rw6G037550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1135, 1968 |
| Acc65I | GGTACC | 1 cut(s) | 2441 |
| AccB1I | GGYRCC | 2 cut(s) | 2441, 2880 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2987 |
| AccII | CGCG | 1 cut(s) | 2815 |
| AciI | CCGC | 3 cut(s) | 2519, 2625, 2904 |
| AcoI | YGGCCR | 3 cut(s) | 385, 2260, 2613 |
| AcsI | RAATTY | 6 cut(s) | 250, 541, 1536, 2100, 2221, 2317 |
| AcuI | CTGAAG | 3 cut(s) | 537, 1626, 2121 |
| AfaI | GTAC | 6 cut(s) | 367, 592, 654, 2249, 2443, 2603 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 138, 139, 1777, 1778, 2128, 2597, 2677, 2987 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1726 |
| AjnI | CCWGG | 5 cut(s) | 896, 1023, 1301, 1561, 2436 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1849, 1881, 1908, 1940 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2225, 2257 |
| Alw26I | GTCTC | 6 cut(s) | 515, 729, 1286, 1787, 1852, 2507 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 593, 1007, 1886 |
| Ama87I | CYCGRG | 2 cut(s) | 60, 1315 |
| ApaI | GGGCCC | 1 cut(s) | 2625 |
| ApeKI | GCWGC | 7 cut(s) | 164, 322, 1013, 1883, 2268, 2302, 2410 |
| ApoI | RAATTY | 6 cut(s) | 250, 541, 1536, 2100, 2221, 2317 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2248, 2280 |
| AseI | ATTAAT | 1 cut(s) | 83 |
| Asp718I | GGTACC | 1 cut(s) | 2441 |
| AspS9I | GGNCC | 6 cut(s) | 1900, 2013, 2169, 2621, 2622, 2807 |
| AsuC2I | CCSGG | 4 cut(s) | 133, 1316, 1317, 2790 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 503, 1121, 2748 |
| AsuII | TTCGAA | 1 cut(s) | 1232 |
| AvaI | CYCGRG | 2 cut(s) | 60, 1315 |
| AxyI | CCTNAGG | 1 cut(s) | 1242 |
| BaeGI | GKGCMC | 1 cut(s) | 2625 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2433, 2466 |
| BalI | TGGCCA | 2 cut(s) | 387, 2615 |
| BamHI | GGATCC | 1 cut(s) | 2693 |
| BanI | GGYRCC | 2 cut(s) | 2441, 2880 |
| BanII | GRGCYC | 3 cut(s) | 743, 2625, 2723 |
| BbsI | GAAGAC | 2 cut(s) | 623, 2373 |
| BbvI | GCAGC | 7 cut(s) | 151, 309, 1000, 1870, 2280, 2314, 2422 |
| BceAI | ACGGC | 6 cut(s) | 595, 1182, 1531, 2247, 2512, 2794 |
| BciT130I | CCWGG | 5 cut(s) | 898, 1025, 1303, 1563, 2438 |
| BclI | TGATCA | 1 cut(s) | 2362 |
| BcnI | CCSGG | 4 cut(s) | 133, 1316, 1317, 2790 |
| BcoDI | GTCTC | 6 cut(s) | 515, 729, 1286, 1787, 1852, 2507 |
| BfaI | CTAG | 5 cut(s) | 105, 308, 1389, 2115, 2949 |
| BfmI | CTRYAG | 4 cut(s) | 801, 1142, 1647, 2007 |
| BfuAI | ACCTGC | 2 cut(s) | 1135, 1968 |
| BisI | GCNGC | 7 cut(s) | 165, 323, 1014, 1884, 2269, 2303, 2411 |
| BlsI | GCNGC | 7 cut(s) | 166, 324, 1015, 1885, 2270, 2304, 2412 |
| BmcAI | AGTACT | 1 cut(s) | 367 |
| Bme1390I | CCNGG | 9 cut(s) | 133, 898, 1025, 1303, 1316, 1317, 1563, 2438, 2790 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1726 |
| BmeT110I | CYCGRG | 2 cut(s) | 60, 1315 |
| BmgT120I | GGNCC | 6 cut(s) | 1900, 2013, 2169, 2621, 2622, 2807 |
| BmiI | GGNNCC | 7 cut(s) | 1902, 2014, 2443, 2623, 2695, 2882, 2997 |
| BmrFI | CCNGG | 9 cut(s) | 133, 898, 1025, 1303, 1316, 1317, 1563, 2438, 2790 |
| BmrI | ACTGGG | 2 cut(s) | 486, 2814 |
| BmuI | ACTGGG | 2 cut(s) | 486, 2814 |
| BpiI | GAAGAC | 2 cut(s) | 623, 2373 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1536, 1568 |
| BpmI | CTGGAG | 2 cut(s) | 382, 711 |
| Bpu14I | TTCGAA | 1 cut(s) | 1232 |
| BpuEI | CTTGAG | 2 cut(s) | 1719, 1737 |
| BpuMI | CCSGG | 4 cut(s) | 133, 1316, 1317, 2790 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2919 |
| BsaI | GGTCTC | 3 cut(s) | 515, 729, 1787 |
| BsaJI | CCNNGG | 5 cut(s) | 896, 1023, 1315, 2437, 3032 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2572, 2602 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 138, 139, 1777, 1778, 2128, 2597, 2677, 2987 |
| Bse1I | ACTGG | 4 cut(s) | 481, 1628, 2616, 2820 |
| Bse21I | CCTNAGG | 1 cut(s) | 1242 |
| Bse3DI | GCAATG | 4 cut(s) | 605, 862, 1198, 1264 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2919 |
| BseBI | CCWGG | 5 cut(s) | 898, 1025, 1303, 1563, 2438 |
| BseDI | CCNNGG | 5 cut(s) | 896, 1023, 1315, 2437, 3032 |
| BseJI | GATNNNNATC | 1 cut(s) | 2919 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 138, 139, 1777, 1778, 2128, 2597, 2677, 2987 |
| BseMI | GCAATG | 4 cut(s) | 605, 862, 1198, 1264 |
| BseMII | CTCAG | 9 cut(s) | 21, 495, 1117, 1256, 1567, 1653, 1983, 2765, 2915 |
| BseNI | ACTGG | 4 cut(s) | 481, 1628, 2616, 2820 |
| BseRI | GAGGAG | 3 cut(s) | 83, 2094, 2629 |
| BseSI | GKGCMC | 1 cut(s) | 2625 |
| BseXI | GCAGC | 7 cut(s) | 151, 309, 1000, 1870, 2280, 2314, 2422 |
| BseYI | CCCAGC | 2 cut(s) | 2804, 2991 |
| BsgI | GTGCAG | 3 cut(s) | 474, 498, 957 |
| Bsh1236I | CGCG | 1 cut(s) | 2815 |
| BshNI | GGYRCC | 2 cut(s) | 2441, 2880 |
| BsiHKCI | CYCGRG | 2 cut(s) | 60, 1315 |
| BsiSI | CCGG | 3 cut(s) | 133, 1316, 2789 |
| BslFI | GGGAC | 3 cut(s) | 664, 2470, 2802 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 138, 139, 1777, 1778, 2128, 2597, 2677, 2987 |
| BsmAI | GTCTC | 6 cut(s) | 515, 729, 1286, 1787, 1852, 2507 |
| BsmFI | GGGAC | 3 cut(s) | 664, 2470, 2802 |
| BsmI | GAATGC | 1 cut(s) | 709 |
| Bso31I | GGTCTC | 3 cut(s) | 515, 729, 1787 |
| BsoBI | CYCGRG | 2 cut(s) | 60, 1315 |
| Bsp119I | TTCGAA | 1 cut(s) | 1232 |
| Bsp120I | GGGCCC | 1 cut(s) | 2621 |
| Bsp1286I | GDGCHC | 3 cut(s) | 743, 2625, 2723 |
| Bsp1407I | TGTACA | 2 cut(s) | 652, 2247 |
| BspACI | CCGC | 3 cut(s) | 2519, 2625, 2904 |
| BspCNI | CTCAG | 9 cut(s) | 22, 496, 1116, 1255, 1566, 1654, 1984, 2764, 2916 |
| BspFNI | CGCG | 1 cut(s) | 2815 |
| BspHI | TCATGA | 2 cut(s) | 1717, 2766 |
| BspLI | GGNNCC | 7 cut(s) | 1902, 2014, 2443, 2623, 2695, 2882, 2997 |
| BspMAI | CTGCAG | 1 cut(s) | 1146 |
| BspMI | ACCTGC | 2 cut(s) | 1135, 1968 |
| BspQI | GCTCTTC | 1 cut(s) | 1332 |
| BspT104I | TTCGAA | 1 cut(s) | 1232 |
| BspT107I | GGYRCC | 2 cut(s) | 2441, 2880 |
| BspTNI | GGTCTC | 3 cut(s) | 515, 729, 1787 |
| BsrDI | GCAATG | 4 cut(s) | 605, 862, 1198, 1264 |
| BsrGI | TGTACA | 2 cut(s) | 652, 2247 |
| BsrI | ACTGG | 4 cut(s) | 481, 1628, 2616, 2820 |
| BssECI | CCNNGG | 5 cut(s) | 896, 1023, 1315, 2437, 3032 |
| BssT1I | CCWWGG | 1 cut(s) | 3032 |
| Bst2UI | CCWGG | 5 cut(s) | 898, 1025, 1303, 1563, 2438 |
| Bst6I | CTCTTC | 3 cut(s) | 279, 967, 1332 |
| BstAUI | TGTACA | 2 cut(s) | 652, 2247 |
| BstBI | TTCGAA | 1 cut(s) | 1232 |
| BstC8I | GCNNGC | 4 cut(s) | 154, 1344, 2625, 2783 |
| BstDEI | CTNAG | 9 cut(s) | 30, 504, 1103, 1242, 1553, 1662, 1992, 2751, 2924 |
| BstFNI | CGCG | 1 cut(s) | 2815 |
| BstMAI | GTCTC | 6 cut(s) | 515, 729, 1286, 1787, 1852, 2507 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 125, 393, 579, 1013, 1633, 2268 |
| BstNI | CCWGG | 5 cut(s) | 898, 1025, 1303, 1563, 2438 |
| BstSCI | CCNGG | 9 cut(s) | 131, 896, 1023, 1301, 1314, 1315, 1561, 2436, 2788 |
| BstSFI | CTRYAG | 4 cut(s) | 801, 1142, 1647, 2007 |
| BstSLI | GKGCMC | 1 cut(s) | 2625 |
| BstUI | CGCG | 1 cut(s) | 2815 |
| BstV1I | GCAGC | 7 cut(s) | 151, 309, 1000, 1870, 2280, 2314, 2422 |
| BstV2I | GAAGAC | 2 cut(s) | 623, 2373 |
| BstX2I | RGATCY | 7 cut(s) | 357, 730, 1621, 1937, 2524, 2693, 2906 |
| BstYI | RGATCY | 7 cut(s) | 357, 730, 1621, 1937, 2524, 2693, 2906 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1242 |
| BtgZI | GCGATG | 1 cut(s) | 1374 |
| BtsI | GCAGTG | 2 cut(s) | 1176, 2634 |
| BtsIMutI | CAGTG | 5 cut(s) | 1111, 1176, 1602, 2019, 2634 |
| BveI | ACCTGC | 2 cut(s) | 1135, 1968 |
| Cac8I | GCNNGC | 4 cut(s) | 154, 1344, 2625, 2783 |
| CaiI | CAGNNNCTG | 3 cut(s) | 593, 1007, 1886 |
| CciI | TCATGA | 2 cut(s) | 1717, 2766 |
| Cfr13I | GGNCC | 6 cut(s) | 1900, 2013, 2169, 2621, 2622, 2807 |
| Cfr9I | CCCGGG | 1 cut(s) | 1315 |
| CseI | GACGC | 1 cut(s) | 2804 |
| CsiI | ACCWGGT | 1 cut(s) | 1561 |
| Csp6I | GTAC | 6 cut(s) | 366, 591, 653, 2248, 2442, 2602 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1591, 1626 |
| CviAII | CATG | 9 cut(s) | 1718, 1723, 2372, 2647, 2657, 2677, 2767, 2845, 2894 |
| CviQI | GTAC | 6 cut(s) | 366, 591, 653, 2248, 2442, 2602 |
| DdeI | CTNAG | 9 cut(s) | 30, 504, 1103, 1242, 1553, 1662, 1992, 2751, 2924 |
| DraI | TTTAAA | 1 cut(s) | 540 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1726 |
| EaeI | YGGCCR | 3 cut(s) | 385, 2260, 2613 |
| Eam1104I | CTCTTC | 3 cut(s) | 279, 967, 1332 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1726 |
| EarI | CTCTTC | 3 cut(s) | 279, 967, 1332 |
| EciI | GGCGGA | 1 cut(s) | 2919 |
| Eco130I | CCWWGG | 1 cut(s) | 3032 |
| Eco24I | GRGCYC | 3 cut(s) | 743, 2625, 2723 |
| Eco31I | GGTCTC | 3 cut(s) | 515, 729, 1787 |
| Eco57I | CTGAAG | 3 cut(s) | 537, 1626, 2121 |
| Eco81I | CCTNAGG | 1 cut(s) | 1242 |
| Eco88I | CYCGRG | 2 cut(s) | 60, 1315 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2621 |
| EcoRII | CCWGG | 5 cut(s) | 896, 1023, 1301, 1561, 2436 |
| EcoT14I | CCWWGG | 1 cut(s) | 3032 |
| EcoT38I | GRGCYC | 3 cut(s) | 743, 2625, 2723 |
| ErhI | CCWWGG | 1 cut(s) | 3032 |
| FaeI | CATG | 9 cut(s) | 1721, 1726, 2375, 2650, 2660, 2680, 2770, 2848, 2897 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 171, 203, 1926, 1958, 2560, 2592 |
| FaqI | GGGAC | 3 cut(s) | 664, 2470, 2802 |
| FatI | CATG | 9 cut(s) | 1717, 1722, 2371, 2646, 2656, 2676, 2766, 2844, 2893 |
| FauI | CCCGC | 2 cut(s) | 2512, 2632 |
| FauNDI | CATATG | 1 cut(s) | 794 |
| FbaI | TGATCA | 1 cut(s) | 2362 |
| Fnu4HI | GCNGC | 7 cut(s) | 165, 323, 1014, 1884, 2269, 2303, 2411 |
| FriOI | GRGCYC | 3 cut(s) | 743, 2625, 2723 |
| Fsp4HI | GCNGC | 7 cut(s) | 165, 323, 1014, 1884, 2269, 2303, 2411 |
| FspBI | CTAG | 5 cut(s) | 105, 308, 1389, 2115, 2949 |
| GluI | GCNGC | 7 cut(s) | 165, 323, 1014, 1884, 2269, 2303, 2411 |
| GsaI | CCCAGC | 2 cut(s) | 2808, 2995 |
| GsuI | CTGGAG | 2 cut(s) | 382, 711 |
| HapII | CCGG | 3 cut(s) | 133, 1316, 2789 |
| HgaI | GACGC | 1 cut(s) | 2804 |
| Hin1II | CATG | 9 cut(s) | 1721, 1726, 2375, 2650, 2660, 2680, 2770, 2848, 2897 |
| HincII | GTYRAC | 1 cut(s) | 1768 |
| HindII | GTYRAC | 1 cut(s) | 1768 |
| HindIII | AAGCTT | 1 cut(s) | 394 |
| HpaI | GTTAAC | 1 cut(s) | 1768 |
| HpaII | CCGG | 3 cut(s) | 133, 1316, 2789 |
| HphI | GGTGA | 4 cut(s) | 134, 503, 1121, 2748 |
| Hpy166II | GTNNAC | 2 cut(s) | 1550, 1768 |
| Hpy8I | GTNNAC | 2 cut(s) | 1550, 1768 |
| Hpy99I | CGWCG | 3 cut(s) | 1965, 2268, 2815 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 125, 393, 579, 1013, 1633, 2268 |
| HpyF3I | CTNAG | 9 cut(s) | 30, 504, 1103, 1242, 1553, 1662, 1992, 2751, 2924 |
| Hsp92II | CATG | 9 cut(s) | 1721, 1726, 2375, 2650, 2660, 2680, 2770, 2848, 2897 |
| KpnI | GGTACC | 1 cut(s) | 2445 |
| Ksp22I | TGATCA | 1 cut(s) | 2362 |
| KspAI | GTTAAC | 1 cut(s) | 1768 |
| LguI | GCTCTTC | 1 cut(s) | 1332 |
| LmnI | GCTCC | 4 cut(s) | 58, 70, 806, 1858 |
| Lsp1109I | GCAGC | 7 cut(s) | 151, 309, 1000, 1870, 2280, 2314, 2422 |
| MabI | ACCWGGT | 1 cut(s) | 1561 |
| MaeI | CTAG | 5 cut(s) | 105, 308, 1389, 2115, 2949 |
| MaeIII | GTNAC | 8 cut(s) | 76, 303, 668, 949, 1223, 1738, 2754, 3011 |
| MfeI | CAATTG | 2 cut(s) | 159, 203 |
| MflI | RGATCY | 7 cut(s) | 357, 730, 1621, 1937, 2524, 2693, 2906 |
| MhlI | GDGCHC | 3 cut(s) | 743, 2625, 2723 |
| MlsI | TGGCCA | 2 cut(s) | 387, 2615 |
| MluNI | TGGCCA | 2 cut(s) | 387, 2615 |
| MlyI | GAGTC | 8 cut(s) | 207, 296, 1256, 1545, 1568, 1688, 1736, 2158 |
| MmeI | TCCRAC | 1 cut(s) | 686 |
| Mox20I | TGGCCA | 2 cut(s) | 387, 2615 |
| MscI | TGGCCA | 2 cut(s) | 387, 2615 |
| MseI | TTAA | 9 cut(s) | 26, 83, 539, 614, 818, 1035, 1767, 2225, 2457 |
| MslI | CAYNNNNRTG | 2 cut(s) | 83, 2771 |
| Msp20I | TGGCCA | 2 cut(s) | 387, 2615 |
| MspA1I | CMGCKG | 3 cut(s) | 1883, 2413, 2732 |
| MspI | CCGG | 3 cut(s) | 133, 1316, 2789 |
| MspR9I | CCNGG | 9 cut(s) | 133, 898, 1025, 1303, 1316, 1317, 1563, 2438, 2790 |
| MunI | CAATTG | 2 cut(s) | 159, 203 |
| Mva1269I | GAATGC | 1 cut(s) | 709 |
| MvaI | CCWGG | 5 cut(s) | 898, 1025, 1303, 1563, 2438 |
| MvnI | CGCG | 1 cut(s) | 2815 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 125, 393, 579, 1013, 1633, 2268 |
| NciI | CCSGG | 4 cut(s) | 133, 1316, 1317, 2790 |
| NdeI | CATATG | 1 cut(s) | 794 |
| NlaIII | CATG | 9 cut(s) | 1721, 1726, 2375, 2650, 2660, 2680, 2770, 2848, 2897 |
| NlaIV | GGNNCC | 7 cut(s) | 1902, 2014, 2443, 2623, 2695, 2882, 2997 |
| NmuCI | GTSAC | 5 cut(s) | 76, 949, 1223, 1738, 2754 |
| NspV | TTCGAA | 1 cut(s) | 1232 |
| PaeR7I | CTCGAG | 1 cut(s) | 60 |
| PagI | TCATGA | 2 cut(s) | 1717, 2766 |
| PciSI | GCTCTTC | 1 cut(s) | 1332 |
| PctI | GAATGC | 1 cut(s) | 709 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2987 |
| PfoI | TCCNGGA | 1 cut(s) | 1301 |
| PkrI | GCNGC | 7 cut(s) | 166, 324, 1015, 1885, 2270, 2304, 2412 |
| PleI | GAGTC | 8 cut(s) | 207, 295, 1255, 1545, 1568, 1687, 1735, 2157 |
| PpsI | GAGTC | 8 cut(s) | 207, 295, 1255, 1545, 1568, 1687, 1735, 2157 |
| PshBI | ATTAAT | 1 cut(s) | 83 |
| Psp6I | CCWGG | 5 cut(s) | 896, 1023, 1301, 1561, 2436 |
| PspFI | CCCAGC | 2 cut(s) | 2804, 2991 |
| PspGI | CCWGG | 5 cut(s) | 896, 1023, 1301, 1561, 2436 |
| PspN4I | GGNNCC | 7 cut(s) | 1902, 2014, 2443, 2623, 2695, 2882, 2997 |
| PspOMI | GGGCCC | 1 cut(s) | 2621 |
| PspPI | GGNCC | 6 cut(s) | 1900, 2013, 2169, 2621, 2622, 2807 |
| PstI | CTGCAG | 1 cut(s) | 1146 |
| PstNI | CAGNNNCTG | 3 cut(s) | 593, 1007, 1886 |
| PsuI | RGATCY | 7 cut(s) | 357, 730, 1621, 1937, 2524, 2693, 2906 |
| PvuII | CAGCTG | 3 cut(s) | 1883, 2413, 2732 |
| RsaI | GTAC | 6 cut(s) | 367, 592, 654, 2249, 2443, 2603 |
| RsaNI | GTAC | 6 cut(s) | 366, 591, 653, 2248, 2442, 2602 |
| RseI | CAYNNNNRTG | 2 cut(s) | 83, 2771 |
| SapI | GCTCTTC | 1 cut(s) | 1332 |
| SaqAI | TTAA | 9 cut(s) | 26, 83, 539, 614, 818, 1035, 1767, 2225, 2457 |
| SatI | GCNGC | 7 cut(s) | 165, 323, 1014, 1884, 2269, 2303, 2411 |
| Sau96I | GGNCC | 6 cut(s) | 1900, 2013, 2169, 2621, 2622, 2807 |
| ScaI | AGTACT | 1 cut(s) | 367 |
| SchI | GAGTC | 8 cut(s) | 207, 296, 1256, 1545, 1568, 1688, 1736, 2158 |
| ScrFI | CCNGG | 9 cut(s) | 133, 898, 1025, 1303, 1316, 1317, 1563, 2438, 2790 |
| SduI | GDGCHC | 3 cut(s) | 743, 2625, 2723 |
| SexAI | ACCWGGT | 1 cut(s) | 1561 |
| SfcI | CTRYAG | 4 cut(s) | 801, 1142, 1647, 2007 |
| Sfr274I | CTCGAG | 1 cut(s) | 60 |
| SfuI | TTCGAA | 1 cut(s) | 1232 |
| SlaI | CTCGAG | 1 cut(s) | 60 |
| SmaI | CCCGGG | 1 cut(s) | 1317 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 83, 2771 |
| SmlI | CTYRAG | 3 cut(s) | 60, 1734, 1752 |
| SmoI | CTYRAG | 3 cut(s) | 60, 1734, 1752 |
| SsiI | CCGC | 3 cut(s) | 2519, 2625, 2904 |
| SspI | AATATT | 1 cut(s) | 1396 |
| SspMI | CTAG | 5 cut(s) | 105, 308, 1389, 2115, 2949 |
| StyD4I | CCNGG | 9 cut(s) | 131, 896, 1023, 1301, 1314, 1315, 1561, 2436, 2788 |
| StyI | CCWWGG | 1 cut(s) | 3032 |
| TaqI | TCGA | 7 cut(s) | 9, 61, 412, 1232, 1462, 1963, 2826 |
| TatI | WGTACW | 3 cut(s) | 365, 652, 2247 |
| Tru1I | TTAA | 9 cut(s) | 26, 83, 539, 614, 818, 1035, 1767, 2225, 2457 |
| Tru9I | TTAA | 9 cut(s) | 26, 83, 539, 614, 818, 1035, 1767, 2225, 2457 |
| TscAI | CASTG | 5 cut(s) | 1111, 1176, 1609, 2026, 2634 |
| TseFI | GTSAC | 5 cut(s) | 76, 949, 1223, 1738, 2754 |
| TseI | GCWGC | 7 cut(s) | 164, 322, 1013, 1883, 2268, 2302, 2410 |
| Tsp45I | GTSAC | 5 cut(s) | 76, 949, 1223, 1738, 2754 |
| TspGWI | ACGGA | 1 cut(s) | 2733 |
| TspMI | CCCGGG | 1 cut(s) | 1315 |
| TspRI | CASTG | 5 cut(s) | 1111, 1176, 1609, 2026, 2634 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2987 |
| VspI | ATTAAT | 1 cut(s) | 83 |
| XapI | RAATTY | 6 cut(s) | 250, 541, 1536, 2100, 2221, 2317 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1720, 2988 |
| XhoI | CTCGAG | 1 cut(s) | 60 |
| XmaI | CCCGGG | 1 cut(s) | 1315 |
| XspI | CTAG | 5 cut(s) | 105, 308, 1389, 2115, 2949 |
| ZrmI | AGTACT | 1 cut(s) | 367 |