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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24200 AT4G24200 |
| fragaria_vesca | FvH4_2g38250 FvH4_2g38250 |
| malus_domestica | MD08G1010900.v1.1 MD15G1010900.v1.1 |
| prunus_persica | Prupe.1G363500_v2.0.a1 |
| pyrus_communis | pycom08g00970 pycom15g00930 |
| rosa_chinensis | RchiOBHm_Chr6g0303121 |
| rosa_laevigata | RLG00000011106 |
| rosa_multiflora | Rmu_sc0008911.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00165000 |
| rosa_rugosa | Rorug06G0319200 |
| rosa_samantha | Rh6AG433200 Rh6BG469500 Rh6CG445500 Rh6DG432300 |
| rosa_wichuraiana | Rw6G037550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 935 |
| Acc16I | TGCGCA | 1 cut(s) | 2739 |
| Acc65I | GGTACC | 1 cut(s) | 2399 |
| AccB1I | GGYRCC | 2 cut(s) | 1603, 2399 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1045 |
| AccI | GTMKAC | 1 cut(s) | 1975 |
| AccII | CGCG | 1 cut(s) | 61 |
| AciI | CCGC | 7 cut(s) | 1223, 1654, 2472, 2685, 2958, 3014, 3017 |
| AclWI | GGATC | 9 cut(s) | 365, 417, 726, 739, 1133, 1833, 1942, 2148, 2895 |
| AcoI | YGGCCR | 1 cut(s) | 2221 |
| AcsI | RAATTY | 3 cut(s) | 250, 2278, 2725 |
| AcuI | CTGAAG | 9 cut(s) | 336, 537, 813, 963, 1491, 1503, 1761, 2082, 2364 |
| AcyI | GRCGYC | 1 cut(s) | 1604 |
| AfaI | GTAC | 4 cut(s) | 367, 1186, 2401, 2661 |
| AfeI | AGCGCT | 1 cut(s) | 715 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 138, 139, 1045, 1774, 1775, 2632, 2957 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2223 |
| AjnI | CCWGG | 7 cut(s) | 735, 1000, 1038, 1891, 2445, 2611, 2743 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1846, 1878, 1905, 1937 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2186, 2218 |
| Alw21I | GWGCWC | 3 cut(s) | 313, 1682, 1814 |
| Alw26I | GTCTC | 6 cut(s) | 690, 1234, 1268, 1849, 2462, 2533 |
| Alw44I | GTGCAC | 1 cut(s) | 1678 |
| AlwI | GGATC | 9 cut(s) | 365, 417, 726, 739, 1133, 1833, 1942, 2148, 2895 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 73, 986, 1022, 1883, 2961 |
| Aor51HI | AGCGCT | 1 cut(s) | 715 |
| ApaLI | GTGCAC | 1 cut(s) | 1678 |
| ApoI | RAATTY | 3 cut(s) | 250, 2278, 2725 |
| Asp718I | GGTACC | 1 cut(s) | 2399 |
| AspLEI | GCGC | 3 cut(s) | 716, 1606, 2740 |
| AsuC2I | CCSGG | 4 cut(s) | 133, 1832, 1961, 2334 |
| AvaII | GGWCC | 7 cut(s) | 590, 890, 928, 1651, 2010, 2576, 2609 |
| AxyI | CCTNAGG | 1 cut(s) | 2846 |
| BaeGI | GKGCMC | 1 cut(s) | 1682 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2391, 2424, 2643, 2676 |
| BamHI | GGATCC | 1 cut(s) | 731 |
| BanI | GGYRCC | 2 cut(s) | 1603, 2399 |
| BanII | GRGCYC | 1 cut(s) | 1900 |
| BbsI | GAAGAC | 2 cut(s) | 371, 2334 |
| Bbv12I | GWGCWC | 3 cut(s) | 313, 1682, 1814 |
| BbvCI | CCTCAGC | 1 cut(s) | 2596 |
| BceAI | ACGGC | 2 cut(s) | 2208, 2470 |
| BciT130I | CCWGG | 7 cut(s) | 737, 1002, 1040, 1893, 2447, 2613, 2745 |
| BciVI | GTATCC | 2 cut(s) | 733, 1365 |
| BclI | TGATCA | 1 cut(s) | 565 |
| BcnI | CCSGG | 4 cut(s) | 133, 1832, 1961, 2334 |
| BcoDI | GTCTC | 6 cut(s) | 690, 1234, 1268, 1849, 2462, 2533 |
| BfaI | CTAG | 3 cut(s) | 1364, 1445, 2367 |
| BfmI | CTRYAG | 8 cut(s) | 388, 1188, 1495, 1626, 2004, 2319, 2925, 2983 |
| BfoI | RGCGCY | 2 cut(s) | 717, 1607 |
| BfuI | GTATCC | 2 cut(s) | 733, 1365 |
| BmcAI | AGTACT | 1 cut(s) | 1186 |
| Bme18I | GGWCC | 7 cut(s) | 590, 890, 928, 1651, 2010, 2576, 2609 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2223 |
| BmrI | ACTGGG | 2 cut(s) | 2701, 2781 |
| BmsI | GCATC | 9 cut(s) | 115, 232, 643, 1142, 1363, 1429, 1973, 2158, 2365 |
| BmuI | ACTGGG | 2 cut(s) | 2701, 2781 |
| BpiI | GAAGAC | 2 cut(s) | 371, 2334 |
| BpmI | CTGGAG | 2 cut(s) | 382, 1914 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2596 |
| BpuEI | CTTGAG | 2 cut(s) | 1442, 1734 |
| BpuMI | CCSGG | 4 cut(s) | 133, 1832, 1961, 2334 |
| Bsa29I | ATCGAT | 1 cut(s) | 2059 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1797, 1995, 2145 |
| BsaHI | GRCGYC | 1 cut(s) | 1604 |
| BsaI | GGTCTC | 1 cut(s) | 2462 |
| BsaJI | CCNNGG | 9 cut(s) | 168, 399, 735, 1001, 1038, 2445, 2487, 2652, 3020 |
| BsaWI | WCCGGW | 2 cut(s) | 1489, 2214 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 380, 410, 2640, 2670 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 138, 139, 1045, 1774, 1775, 2632, 2957 |
| Bse1I | ACTGG | 8 cut(s) | 1871, 2016, 2224, 2503, 2578, 2707, 2737, 2787 |
| Bse21I | CCTNAGG | 1 cut(s) | 2846 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1797, 1995, 2145 |
| BseBI | CCWGG | 7 cut(s) | 737, 1002, 1040, 1893, 2447, 2613, 2745 |
| BseCI | ATCGAT | 1 cut(s) | 2059 |
| BseDI | CCNNGG | 9 cut(s) | 168, 399, 735, 1001, 1038, 2445, 2487, 2652, 3020 |
| BseGI | GGATG | 8 cut(s) | 451, 1048, 1090, 1162, 1437, 2366, 2380, 2681 |
| BseJI | GATNNNNATC | 3 cut(s) | 1797, 1995, 2145 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 138, 139, 1045, 1774, 1775, 2632, 2957 |
| BseMII | CTCAG | 8 cut(s) | 21, 1546, 1598, 1632, 1745, 1995, 2610, 2837 |
| BseNI | ACTGG | 8 cut(s) | 1871, 2016, 2224, 2503, 2578, 2707, 2737, 2787 |
| BseRI | GAGGAG | 3 cut(s) | 1959, 2584, 2661 |
| BseSI | GKGCMC | 1 cut(s) | 1682 |
| BseYI | CCCAGC | 3 cut(s) | 479, 2771, 2961 |
| Bsh1236I | CGCG | 1 cut(s) | 61 |
| BshNI | GGYRCC | 2 cut(s) | 1603, 2399 |
| BshVI | ATCGAT | 1 cut(s) | 2059 |
| BsiHKAI | GWGCWC | 3 cut(s) | 313, 1682, 1814 |
| BsiSI | CCGG | 7 cut(s) | 133, 1490, 1832, 1960, 2215, 2333, 2805 |
| BslFI | GGGAC | 4 cut(s) | 1138, 2023, 2428, 2846 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 138, 139, 1045, 1774, 1775, 2632, 2957 |
| BsmAI | GTCTC | 6 cut(s) | 690, 1234, 1268, 1849, 2462, 2533 |
| BsmBI | CGTCTC | 1 cut(s) | 1849 |
| BsmFI | GGGAC | 4 cut(s) | 1138, 2023, 2428, 2846 |
| BsmI | GAATGC | 3 cut(s) | 481, 1211, 1312 |
| Bso31I | GGTCTC | 1 cut(s) | 2462 |
| Bsp1286I | GDGCHC | 4 cut(s) | 313, 1682, 1814, 1900 |
| Bsp19I | CCATGG | 3 cut(s) | 399, 2487, 3020 |
| Bsp68I | TCGCGA | 1 cut(s) | 61 |
| BspACI | CCGC | 7 cut(s) | 1223, 1654, 2472, 2685, 2958, 3014, 3017 |
| BspCNI | CTCAG | 8 cut(s) | 22, 1545, 1597, 1633, 1744, 1994, 2609, 2838 |
| BspDI | ATCGAT | 1 cut(s) | 2059 |
| BspFNI | CGCG | 1 cut(s) | 61 |
| BspHI | TCATGA | 1 cut(s) | 2721 |
| BspMAI | CTGCAG | 2 cut(s) | 1499, 1630 |
| BspPI | GGATC | 9 cut(s) | 365, 417, 726, 739, 1133, 1833, 1942, 2148, 2895 |
| BspQI | GCTCTTC | 1 cut(s) | 2861 |
| BspT107I | GGYRCC | 2 cut(s) | 1603, 2399 |
| BspTNI | GGTCTC | 1 cut(s) | 2462 |
| BsrI | ACTGG | 8 cut(s) | 1871, 2016, 2224, 2503, 2578, 2707, 2737, 2787 |
| BssECI | CCNNGG | 9 cut(s) | 168, 399, 735, 1001, 1038, 2445, 2487, 2652, 3020 |
| BssNI | GRCGYC | 1 cut(s) | 1604 |
| BssT1I | CCWWGG | 3 cut(s) | 399, 2487, 3020 |
| Bst2UI | CCWGG | 7 cut(s) | 737, 1002, 1040, 1893, 2447, 2613, 2745 |
| Bst6I | CTCTTC | 4 cut(s) | 279, 368, 982, 2861 |
| BstACI | GRCGYC | 1 cut(s) | 1604 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1373 |
| BstC8I | GCNNGC | 2 cut(s) | 154, 1885 |
| BstDSI | CCRYGG | 5 cut(s) | 168, 399, 2487, 2652, 3020 |
| BstEII | GGTNACC | 1 cut(s) | 76 |
| BstF5I | GGATG | 8 cut(s) | 451, 1048, 1090, 1162, 1437, 2366, 2380, 2681 |
| BstFNI | CGCG | 1 cut(s) | 61 |
| BstH2I | RGCGCY | 2 cut(s) | 717, 1607 |
| BstHHI | GCGC | 3 cut(s) | 716, 1606, 2740 |
| BstMAI | GTCTC | 6 cut(s) | 690, 1234, 1268, 1849, 2462, 2533 |
| BstNI | CCWGG | 7 cut(s) | 737, 1002, 1040, 1893, 2447, 2613, 2745 |
| BstPI | GGTNACC | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 8 cut(s) | 388, 1188, 1495, 1626, 2004, 2319, 2925, 2983 |
| BstSLI | GKGCMC | 1 cut(s) | 1682 |
| BstUI | CGCG | 1 cut(s) | 61 |
| BstV2I | GAAGAC | 2 cut(s) | 371, 2334 |
| BstX2I | RGATCY | 4 cut(s) | 357, 731, 1934, 2140 |
| BstYI | RGATCY | 4 cut(s) | 357, 731, 1934, 2140 |
| Bsu15I | ATCGAT | 1 cut(s) | 2059 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2846 |
| BsuI | GTATCC | 2 cut(s) | 733, 1365 |
| BsuTUI | ATCGAT | 1 cut(s) | 2059 |
| BtgI | CCRYGG | 5 cut(s) | 168, 399, 2487, 2652, 3020 |
| BtgZI | GCGATG | 2 cut(s) | 42, 1335 |
| BtsCI | GGATG | 8 cut(s) | 451, 1048, 1090, 1162, 1437, 2366, 2380, 2681 |
| BtsI | GCAGTG | 2 cut(s) | 143, 1123 |
| BtsIMutI | CAGTG | 5 cut(s) | 143, 874, 1123, 2023, 2106 |
| BtuMI | TCGCGA | 1 cut(s) | 61 |
| Cac8I | GCNNGC | 2 cut(s) | 154, 1885 |
| CaiI | CAGNNNCTG | 5 cut(s) | 73, 986, 1022, 1883, 2961 |
| CciI | TCATGA | 1 cut(s) | 2721 |
| CfoI | GCGC | 3 cut(s) | 716, 1606, 2740 |
| ClaI | ATCGAT | 1 cut(s) | 2059 |
| CsiI | ACCWGGT | 1 cut(s) | 2611 |
| Csp6I | GTAC | 4 cut(s) | 366, 1185, 2400, 2660 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1131, 1166 |
| CviQI | GTAC | 4 cut(s) | 366, 1185, 2400, 2660 |
| DinI | GGCGCC | 1 cut(s) | 1605 |
| DraI | TTTAAA | 1 cut(s) | 543 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 935 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2223 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 935 |
| EaeI | YGGCCR | 1 cut(s) | 2221 |
| Eam1104I | CTCTTC | 4 cut(s) | 279, 368, 982, 2861 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2223 |
| EarI | CTCTTC | 4 cut(s) | 279, 368, 982, 2861 |
| Eco130I | CCWWGG | 3 cut(s) | 399, 2487, 3020 |
| Eco24I | GRGCYC | 1 cut(s) | 1900 |
| Eco31I | GGTCTC | 1 cut(s) | 2462 |
| Eco47I | GGWCC | 7 cut(s) | 590, 890, 928, 1651, 2010, 2576, 2609 |
| Eco47III | AGCGCT | 1 cut(s) | 715 |
| Eco57I | CTGAAG | 9 cut(s) | 336, 537, 813, 963, 1491, 1503, 1761, 2082, 2364 |
| Eco81I | CCTNAGG | 1 cut(s) | 2846 |
| Eco91I | GGTNACC | 1 cut(s) | 76 |
| EcoO109I | RGGNCCY | 2 cut(s) | 590, 2130 |
| EcoO65I | GGTNACC | 1 cut(s) | 76 |
| EcoRII | CCWGG | 7 cut(s) | 735, 1000, 1038, 1891, 2445, 2611, 2743 |
| EcoT14I | CCWWGG | 3 cut(s) | 399, 2487, 3020 |
| EcoT22I | ATGCAT | 1 cut(s) | 2356 |
| EcoT38I | GRGCYC | 1 cut(s) | 1900 |
| EgeI | GGCGCC | 1 cut(s) | 1605 |
| EheI | GGCGCC | 1 cut(s) | 1605 |
| ErhI | CCWWGG | 3 cut(s) | 399, 2487, 3020 |
| Esp3I | CGTCTC | 1 cut(s) | 1849 |
| FaqI | GGGAC | 4 cut(s) | 1138, 2023, 2428, 2846 |
| FauNDI | CATATG | 1 cut(s) | 2356 |
| FbaI | TGATCA | 1 cut(s) | 565 |
| FblI | GTMKAC | 1 cut(s) | 1975 |
| FokI | GGATG | 8 cut(s) | 458, 1055, 1097, 1169, 1444, 2373, 2387, 2668 |
| FriOI | GRGCYC | 1 cut(s) | 1900 |
| FspBI | CTAG | 3 cut(s) | 1364, 1445, 2367 |
| FspI | TGCGCA | 1 cut(s) | 2739 |
| GlaI | GCGC | 3 cut(s) | 715, 1605, 2739 |
| GsaI | CCCAGC | 3 cut(s) | 483, 2775, 2965 |
| GsuI | CTGGAG | 2 cut(s) | 382, 1914 |
| HaeII | RGCGCY | 2 cut(s) | 717, 1607 |
| HapII | CCGG | 7 cut(s) | 133, 1490, 1832, 1960, 2215, 2333, 2805 |
| HhaI | GCGC | 3 cut(s) | 716, 1606, 2740 |
| Hin1I | GRCGYC | 1 cut(s) | 1604 |
| Hin6I | GCGC | 3 cut(s) | 714, 1604, 2738 |
| HinP1I | GCGC | 3 cut(s) | 714, 1604, 2738 |
| HincII | GTYRAC | 2 cut(s) | 940, 1765 |
| HindII | GTYRAC | 2 cut(s) | 940, 1765 |
| HindIII | AAGCTT | 2 cut(s) | 2427, 2503 |
| HpaI | GTTAAC | 1 cut(s) | 1765 |
| HpaII | CCGG | 7 cut(s) | 133, 1490, 1832, 1960, 2215, 2333, 2805 |
| Hpy166II | GTNNAC | 5 cut(s) | 940, 1529, 1680, 1765, 1976 |
| Hpy8I | GTNNAC | 5 cut(s) | 940, 1529, 1680, 1765, 1976 |
| Hpy99I | CGWCG | 2 cut(s) | 1461, 2229 |
| HpyCH4IV | ACGT | 1 cut(s) | 1525 |
| HpySE526I | ACGT | 1 cut(s) | 1525 |
| Hsp92I | GRCGYC | 1 cut(s) | 1604 |
| HspAI | GCGC | 3 cut(s) | 714, 1604, 2738 |
| KasI | GGCGCC | 1 cut(s) | 1603 |
| KpnI | GGTACC | 1 cut(s) | 2403 |
| Ksp22I | TGATCA | 1 cut(s) | 565 |
| KspAI | GTTAAC | 1 cut(s) | 1765 |
| LguI | GCTCTTC | 1 cut(s) | 2861 |
| LmnI | GCTCC | 6 cut(s) | 70, 401, 1309, 1817, 1895, 2648 |
| LweI | GCATC | 9 cut(s) | 115, 232, 643, 1142, 1363, 1429, 1973, 2158, 2365 |
| MabI | ACCWGGT | 1 cut(s) | 2611 |
| MaeI | CTAG | 3 cut(s) | 1364, 1445, 2367 |
| MaeII | ACGT | 1 cut(s) | 1525 |
| MaeIII | GTNAC | 7 cut(s) | 76, 303, 547, 674, 964, 1735, 2709 |
| MfeI | CAATTG | 3 cut(s) | 159, 1368, 1392 |
| MflI | RGATCY | 4 cut(s) | 357, 731, 1934, 2140 |
| MhlI | GDGCHC | 4 cut(s) | 313, 1682, 1814, 1900 |
| Mly113I | GGCGCC | 1 cut(s) | 1604 |
| MmeI | TCCRAC | 2 cut(s) | 814, 975 |
| Mph1103I | ATGCAT | 1 cut(s) | 2356 |
| MseI | TTAA | 5 cut(s) | 26, 254, 542, 617, 1764 |
| MslI | CAYNNNNRTG | 2 cut(s) | 83, 2359 |
| MspA1I | CMGCKG | 3 cut(s) | 1880, 2687, 2958 |
| MspI | CCGG | 7 cut(s) | 133, 1490, 1832, 1960, 2215, 2333, 2805 |
| MunI | CAATTG | 3 cut(s) | 159, 1368, 1392 |
| Mva1269I | GAATGC | 3 cut(s) | 481, 1211, 1312 |
| MvaI | CCWGG | 7 cut(s) | 737, 1002, 1040, 1893, 2447, 2613, 2745 |
| MvnI | CGCG | 1 cut(s) | 61 |
| NarI | GGCGCC | 1 cut(s) | 1604 |
| NciI | CCSGG | 4 cut(s) | 133, 1832, 1961, 2334 |
| NcoI | CCATGG | 3 cut(s) | 399, 2487, 3020 |
| NdeI | CATATG | 1 cut(s) | 2356 |
| NmuCI | GTSAC | 4 cut(s) | 76, 964, 1735, 2709 |
| NruI | TCGCGA | 1 cut(s) | 61 |
| NsbI | TGCGCA | 1 cut(s) | 2739 |
| NsiI | ATGCAT | 1 cut(s) | 2356 |
| PagI | TCATGA | 1 cut(s) | 2721 |
| PciSI | GCTCTTC | 1 cut(s) | 2861 |
| PctI | GAATGC | 3 cut(s) | 481, 1211, 1312 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1045 |
| PluTI | GGCGCC | 1 cut(s) | 1607 |
| PpuMI | RGGWCCY | 1 cut(s) | 590 |
| Psp5II | RGGWCCY | 1 cut(s) | 590 |
| Psp6I | CCWGG | 7 cut(s) | 735, 1000, 1038, 1891, 2445, 2611, 2743 |
| PspEI | GGTNACC | 1 cut(s) | 76 |
| PspFI | CCCAGC | 3 cut(s) | 479, 2771, 2961 |
| PspGI | CCWGG | 7 cut(s) | 735, 1000, 1038, 1891, 2445, 2611, 2743 |
| PspPPI | RGGWCCY | 1 cut(s) | 590 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1560, 1592 |
| PstI | CTGCAG | 2 cut(s) | 1499, 1630 |
| PstNI | CAGNNNCTG | 5 cut(s) | 73, 986, 1022, 1883, 2961 |
| PsuI | RGATCY | 4 cut(s) | 357, 731, 1934, 2140 |
| PvuII | CAGCTG | 1 cut(s) | 1880 |
| RruI | TCGCGA | 1 cut(s) | 61 |
| RsaI | GTAC | 4 cut(s) | 367, 1186, 2401, 2661 |
| RsaNI | GTAC | 4 cut(s) | 366, 1185, 2400, 2660 |
| RseI | CAYNNNNRTG | 2 cut(s) | 83, 2359 |
| SapI | GCTCTTC | 1 cut(s) | 2861 |
| SaqAI | TTAA | 5 cut(s) | 26, 254, 542, 617, 1764 |
| ScaI | AGTACT | 1 cut(s) | 1186 |
| SduI | GDGCHC | 4 cut(s) | 313, 1682, 1814, 1900 |
| SexAI | ACCWGGT | 1 cut(s) | 2611 |
| SfaNI | GCATC | 9 cut(s) | 115, 232, 643, 1142, 1363, 1429, 1973, 2158, 2365 |
| SfcI | CTRYAG | 8 cut(s) | 388, 1188, 1495, 1626, 2004, 2319, 2925, 2983 |
| SfoI | GGCGCC | 1 cut(s) | 1605 |
| SinI | GGWCC | 7 cut(s) | 590, 890, 928, 1651, 2010, 2576, 2609 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 83, 2359 |
| SmlI | CTYRAG | 2 cut(s) | 1421, 1749 |
| SmoI | CTYRAG | 2 cut(s) | 1421, 1749 |
| SsiI | CCGC | 7 cut(s) | 1223, 1654, 2472, 2685, 2958, 3014, 3017 |
| SspDI | GGCGCC | 1 cut(s) | 1603 |
| SspI | AATATT | 1 cut(s) | 118 |
| SspMI | CTAG | 3 cut(s) | 1364, 1445, 2367 |
| StyI | CCWWGG | 3 cut(s) | 399, 2487, 3020 |
| TaiI | ACGT | 1 cut(s) | 1528 |
| TaqI | TCGA | 3 cut(s) | 1456, 2059, 2409 |
| TatI | WGTACW | 1 cut(s) | 1184 |
| TauI | GCSGC | 3 cut(s) | 1225, 2961, 3019 |
| Tru1I | TTAA | 5 cut(s) | 26, 254, 542, 617, 1764 |
| Tru9I | TTAA | 5 cut(s) | 26, 254, 542, 617, 1764 |
| TscAI | CASTG | 5 cut(s) | 143, 874, 1123, 2023, 2106 |
| TseFI | GTSAC | 4 cut(s) | 76, 964, 1735, 2709 |
| Tsp45I | GTSAC | 4 cut(s) | 76, 964, 1735, 2709 |
| TspGWI | ACGGA | 2 cut(s) | 185, 840 |
| TspRI | CASTG | 5 cut(s) | 143, 874, 1123, 2023, 2106 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1045 |
| VneI | GTGCAC | 1 cut(s) | 1678 |
| VpaK11BI | GGWCC | 7 cut(s) | 590, 890, 928, 1651, 2010, 2576, 2609 |
| XapI | RAATTY | 3 cut(s) | 250, 2278, 2725 |
| XbaI | TCTAGA | 1 cut(s) | 1444 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2958, 3018 |
| XmiI | GTMKAC | 1 cut(s) | 1975 |
| XspI | CTAG | 3 cut(s) | 1364, 1445, 2367 |
| ZrmI | AGTACT | 1 cut(s) | 1186 |
| Zsp2I | ATGCAT | 1 cut(s) | 2356 |