Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011898

Physical Location & Seq

Genomic Coordinates Reverse (-)

39008965 .. 39011716

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G468500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGTTCTTGTAAAGAAAACCAACAAGAAAACCCACAACAACCAAATTGTGGGTTTGTTCAAGGGCCTATAATTGTAGGCGCAGGACCATCTGGTCTTGCAGCAGCTGCTTGCCTCTCCAACCATGGCGTCCCTTCGCTAATTCTTGAGAAAAGTGACTGCATAGCTTCTCTATGGCAGCACAAGACCTACGACCGCCTCAAGCTTCACCTTCCCAAACAATTCTGTGAGCTTCCACTCATGGGCTTCCCTGAAGATTTCCCAAGGTACCCAACAAAATTCCAGTTCATTTCCTACATGGAAACCTATGCTTCACACTTCTCAATCAAGCCCAAGTTCAACCAAGCTGTTCAGAGTGCTGAGTTTGATTCTGGGTTTTGGAGGGTTAAGACTCAAGATTTTGAGTACATTTCCAAGTGGCTTATTGTGGCCACAGGTGAGAATGCTGAGCCTGCGATACCAGAAATTGGTGGGATGGAGAAATTTCAAGGCCCTATTCTTCACACCAGTCTCTACAAATCTGGCTCTGATTTCAAAAACCAAAGAGTTTTGGTTGTTGGCTGTGGAAATTCTGGCATGGAAGTCAGCCTAGACCTCTGCAGACACAATGCAAATCCTCATATGGTTGTTAGAAACACTGTTCATGTTCTACCAAGAGAGATGTTTGGTTTCTCAACCTTTGGAATTGCAATGGCACTTCTCAAATGGCTGCCGTTGAAACTTGTTGACAAGGTCCTCTTGCTACTGGCCACAATCATCCTAGGCAACACAGACCAATTAGGCCTCAGGAGGCCAAAAACTGGTCCAATTGAGCTCAAAAATGCCACAGGAAAAACCCCCGTGCTTGATGTAGGAGCATTGTCACAGATAAAATCTGGCAAAATAAAGGTGGTGGTGGAAGGTGTGAAAGAGATAACAAGAAATGGAGCCAGATTTATGAATGGACAGGAAAAGGAGTTTGATTCTATAATCTTAGCAACTGGGTACAAAAGCAATGTGCCTACTTGGCTCAAGGGTTGTGATTTTTTCACCAAAGATGGCATGCCCAAAACACCCTTTCCTGACTGCTGGAGAGGAAGTGAAGGACTTTACACAGTTGGCTTCACAAGAAGAGGGCTTCTTGGAACGGCCTCTGATGCTGTTGAGATTGCCAACGACGTTGCTCAACTTTGGAAGACAAACAAAGACTGCAGGAGTTCTTGTAATTCCCATATTATTCTTCTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009850 GO:0009851 GO:0009909 GO:0009911 GO:0009987 GO:0010154 GO:0010229 GO:0010817 GO:0012505 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0022414 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0047434 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0090567 GO:0098588 GO:0098791 GO:0098827 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like Pyr_redox_3

Protein Analysis

410

Amino Acids

45.25

Weight (kDa)

8.84

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11320 AT5G11320
fragaria_vesca	FvH4_2g29930 FvH4_2g29930
malus_domestica	MD08G1139500.v1.1 MD15G1117200.v1.1
prunus_persica	Prupe.1G468500_v2.0.a1
pyrus_communis	pycom08g11760 pycom15g10560
rosa_chinensis	RchiOBHm_Chr6g0312961
rosa_laevigata	RLG00000010282
rosa_multiflora	Rmu_sc0008049.1_g000062
rosa_roxburghii	Rroxscaffold_7G00156290
rosa_rugosa	Rorug06G0401000
rosa_samantha	Rh6AG517900 Rh6BG529600 Rh6CG534100 Rh6DG520700
rosa_wichuraiana	Rw6G045040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	93
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AccB7I	CCANNNNNTGG	3 cut(s)	50, 467, 800
AciI	CCGC	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	429, 747
AcsI	RAATTY	3 cut(s)	278, 482, 568
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	269, 407, 986
AfiI	CCNNNNNNNGG	4 cut(s)	50, 242, 467, 800
AgsI	TTSAA	5 cut(s)	62, 340, 488, 535, 718
AluBI	AGCT	6 cut(s)	107, 167, 205, 232, 347, 814
AluI	AGCT	6 cut(s)	107, 167, 205, 232, 347, 814
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	7 cut(s)	65, 429, 490, 747, 781, 791, 1128
ApeKI	GCWGC	5 cut(s)	101, 104, 107, 178, 709
ApoI	RAATTY	3 cut(s)	278, 482, 568
Asp718I	GGTACC	1 cut(s)	267
AspA2I	CCTAGG	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	5 cut(s)	65, 86, 491, 733, 803
AsuHPI	GGTGA	3 cut(s)	200, 449, 1021
AvaII	GGWCC	3 cut(s)	86, 733, 803
AvrII	CCTAGG	1 cut(s)	760
AxyI	CCTNAGG	1 cut(s)	785
BalI	TGGCCA	2 cut(s)	431, 749
BanI	GGYRCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	1181
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	5 cut(s)	94, 113, 116, 190, 696
BccI	CCATC	3 cut(s)	97, 469, 1031
BceAI	ACGGC	2 cut(s)	697, 1143
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	2 cut(s)	590, 761
BfmI	CTRYAG	2 cut(s)	598, 1189
BglI	GCCNNNNNGGC	1 cut(s)	1006
BisI	GCNGC	5 cut(s)	102, 105, 108, 179, 710
BlnI	CCTAGG	1 cut(s)	760
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	5 cut(s)	103, 106, 109, 180, 711
Bme18I	GGWCC	3 cut(s)	86, 733, 803
BmgT120I	GGNCC	5 cut(s)	65, 86, 491, 733, 803
BmiI	GGNNCC	2 cut(s)	269, 928
BmrI	ACTGGG	1 cut(s)	990
BmsI	GCATC	1 cut(s)	1126
BmuI	ACTGGG	1 cut(s)	990
BpiI	GAAGAC	1 cut(s)	1181
BpmI	CTGGAG	1 cut(s)	1090
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	4 cut(s)	167, 185, 378, 995
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	124, 263, 760
BsaXI	ACNNNNNCTCC	4 cut(s)	1063, 1093, 1186, 1216
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 242, 467, 800
Bse1I	ACTGG	5 cut(s)	283, 507, 750, 805, 985
Bse21I	CCTNAGG	1 cut(s)	785
Bse3DI	GCAATG	2 cut(s)	696, 1000
BseDI	CCNNGG	3 cut(s)	124, 263, 760
BseGI	GGATG	2 cut(s)	480, 756
BseLI	CCNNNNNNNGG	4 cut(s)	50, 242, 467, 800
BseMI	GCAATG	2 cut(s)	696, 1000
BseMII	CTCAG	3 cut(s)	351, 438, 799
BseNI	ACTGG	5 cut(s)	283, 507, 750, 805, 985
BseXI	GCAGC	5 cut(s)	94, 113, 116, 190, 696
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	7 cut(s)	67, 431, 492, 749, 783, 793, 1130
BshNI	GGYRCC	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	50, 242, 467, 800
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	7 cut(s)	67, 431, 492, 749, 783, 793, 1130
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	7 cut(s)	67, 431, 492, 749, 783, 793, 1130
BspCNI	CTCAG	3 cut(s)	352, 439, 798
BspLI	GGNNCC	2 cut(s)	269, 928
BspMAI	CTGCAG	2 cut(s)	602, 1193
BspT107I	GGYRCC	1 cut(s)	267
BsrDI	GCAATG	2 cut(s)	696, 1000
BsrI	ACTGG	5 cut(s)	283, 507, 750, 805, 985
BssECI	CCNNGG	3 cut(s)	124, 263, 760
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	3 cut(s)	124, 263, 760
Bst4CI	ACNGT	2 cut(s)	640, 1096
Bst6I	CTCTTC	1 cut(s)	1105
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	112, 453, 1043
BstDEI	CTNAG	4 cut(s)	360, 447, 785, 973
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	480, 756
BstHHI	GCGC	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	515
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 452, 1006, 1136
BstNSI	RCATGY	1 cut(s)	1045
BstSFI	CTRYAG	2 cut(s)	598, 1189
BstV1I	GCAGC	5 cut(s)	94, 113, 116, 190, 696
BstV2I	GAAGAC	1 cut(s)	1181
Bsu36I	CCTNAGG	1 cut(s)	785
BsuRI	GGCC	7 cut(s)	67, 431, 492, 749, 783, 793, 1130
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	480, 756
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	112, 453, 1043
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	5 cut(s)	65, 86, 491, 733, 803
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	268, 406, 985
CviAII	CATG	6 cut(s)	125, 241, 298, 577, 644, 1042
CviQI	GTAC	3 cut(s)	268, 406, 985
DdeI	CTNAG	4 cut(s)	360, 447, 785, 973
DrdI	GACNNNNNNGTC	1 cut(s)	93
DseDI	GACNNNNNNGTC	1 cut(s)	93
EaeI	YGGCCR	2 cut(s)	429, 747
Eam1104I	CTCTTC	1 cut(s)	1105
EarI	CTCTTC	1 cut(s)	1105
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	3 cut(s)	124, 263, 760
Eco147I	AGGCCT	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	816
Eco47I	GGWCC	3 cut(s)	86, 733, 803
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	814
EcoO109I	RGGNCCY	3 cut(s)	65, 491, 733
EcoT14I	CCWWGG	3 cut(s)	124, 263, 760
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	3 cut(s)	124, 263, 760
FaeI	CATG	6 cut(s)	128, 244, 301, 580, 647, 1045
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	6 cut(s)	124, 240, 297, 576, 643, 1041
FauNDI	CATATG	1 cut(s)	621
Fnu4HI	GCNGC	5 cut(s)	102, 105, 108, 179, 710
FokI	GGATG	2 cut(s)	487, 743
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	5 cut(s)	102, 105, 108, 179, 710
FspBI	CTAG	2 cut(s)	590, 761
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	5 cut(s)	102, 105, 108, 179, 710
GsuI	CTGGAG	1 cut(s)	1090
HaeIII	GGCC	7 cut(s)	67, 431, 492, 749, 783, 793, 1130
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	6 cut(s)	128, 244, 301, 580, 647, 1045
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	368, 391, 962
HphI	GGTGA	3 cut(s)	200, 449, 1021
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	4 cut(s)	354, 529, 1135, 1224
Hpy188III	TCNNGA	4 cut(s)	146, 395, 787, 1061
Hpy8I	GTNNAC	1 cut(s)	727
Hpy99I	CGWCG	1 cut(s)	1160
HpyAV	CCTTC	4 cut(s)	144, 221, 893, 1076
HpyCH4III	ACNGT	2 cut(s)	640, 1096
HpyCH4IV	ACGT	1 cut(s)	1158
HpyCH4V	TGCA	6 cut(s)	101, 162, 600, 611, 689, 1191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 452, 1006, 1136
HpyF3I	CTNAG	4 cut(s)	360, 447, 785, 973
HpySE526I	ACGT	1 cut(s)	1158
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	6 cut(s)	128, 244, 301, 580, 647, 1045
HspAI	GCGC	1 cut(s)	81
KpnI	GGTACC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	854, 926
Lsp1109I	GCAGC	5 cut(s)	94, 113, 116, 190, 696
LweI	GCATC	1 cut(s)	1126
MaeI	CTAG	2 cut(s)	590, 761
MaeII	ACGT	1 cut(s)	1158
MaeIII	GTNAC	2 cut(s)	155, 861
MboII	GAAGA	5 cut(s)	266, 491, 1122, 1186, 1211
MfeI	CAATTG	1 cut(s)	807
MhlI	GDGCHC	1 cut(s)	816
MlsI	TGGCCA	2 cut(s)	431, 749
MluNI	TGGCCA	2 cut(s)	431, 749
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	2 cut(s)	431, 749
MscI	TGGCCA	2 cut(s)	431, 749
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	2 cut(s)	431, 749
MspA1I	CMGCKG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	107, 452, 1006, 1136
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	621
NlaIII	CATG	6 cut(s)	128, 244, 301, 580, 647, 1045
NlaIV	GGNNCC	2 cut(s)	269, 928
NmuCI	GTSAC	2 cut(s)	155, 861
NspI	RCATGY	1 cut(s)	1045
PaeI	GCATGC	1 cut(s)	1045
PceI	AGGCCT	1 cut(s)	783
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	368, 962
PflFI	GACNNNGTC	1 cut(s)	731
PflMI	CCANNNNNTGG	3 cut(s)	50, 467, 800
PkrI	GCNGC	5 cut(s)	103, 106, 109, 180, 711
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PpuMI	RGGWCCY	1 cut(s)	733
Psp124BI	GAGCTC	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	733
PspN4I	GGNNCC	2 cut(s)	269, 928
PspPI	GGNCC	5 cut(s)	65, 86, 491, 733, 803
PspPPI	RGGWCCY	1 cut(s)	733
PstI	CTGCAG	2 cut(s)	602, 1193
PstNI	CAGNNNCTG	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	731
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	3 cut(s)	269, 407, 986
RsaNI	GTAC	3 cut(s)	268, 406, 985
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	5 cut(s)	102, 105, 108, 179, 710
Sau96I	GGNCC	5 cut(s)	65, 86, 491, 733, 803
SchI	GAGTC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	1 cut(s)	1126
SfcI	CTRYAG	2 cut(s)	598, 1189
SinI	GGWCC	3 cut(s)	86, 733, 803
SmlI	CTYRAG	4 cut(s)	146, 200, 393, 1010
SmoI	CTYRAG	4 cut(s)	146, 200, 393, 1010
SphI	GCATGC	1 cut(s)	1045
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	590, 761
SstI	GAGCTC	1 cut(s)	816
StuI	AGGCCT	1 cut(s)	783
StyI	CCWWGG	3 cut(s)	124, 263, 760
TaaI	ACNGT	2 cut(s)	640, 1096
TaiI	ACGT	1 cut(s)	1161
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	368, 962
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	155, 861
TseI	GCWGC	5 cut(s)	101, 104, 107, 178, 709
Tsp45I	GTSAC	2 cut(s)	155, 861
TspDTI	ATGAA	3 cut(s)	277, 632, 953
TspRI	CASTG	1 cut(s)	643
Tth111I	GACNNNGTC	1 cut(s)	731
Van91I	CCANNNNNTGG	3 cut(s)	50, 467, 800
VpaK11BI	GGWCC	3 cut(s)	86, 733, 803
XapI	RAATTY	3 cut(s)	278, 482, 568
XceI	RCATGY	1 cut(s)	1045
XmaJI	CCTAGG	1 cut(s)	760
XspI	CTAG	2 cut(s)	590, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.